PBANKA_0702700 | rhomboid protease ROM3

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0702700OTHER0.9999960.0000000.000003
No Results

  • Fasta :-

    >PBANKA_0702700 MLNKYAENDENSNLLPGTTELIEKNAQNKFYDVLFPQISLNRIIVWISFFQIIIYILSCL LSENLTVPNVDVLIFLGATYGPSVKQGELWRLLFPIFLHANWWHLIINIICILNLGLVIE TKYKKKKFLLIYFLSGFIGNTLTIICNPCQLAVGASTSGFGLIGCSIMEIFLAWKNLSKK AQNYYMFNICIFLVFFLFVSFSPTVDFFGHIGGFVCGAFLACHYNKFLGYDIFQECLHYG FASICALIIFYLPLRLFILNMPCEFA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0702700.fa Sequence name : PBANKA_0702700 Sequence length : 266 VALUES OF COMPUTED PARAMETERS Coef20 : 2.981 CoefTot : -0.141 ChDiff : 1 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.488 2.459 0.501 0.861 MesoH : 1.014 1.336 0.096 0.576 MuHd_075 : 20.535 15.279 5.947 4.796 MuHd_095 : 9.347 7.923 3.521 3.140 MuHd_100 : 11.866 4.181 3.776 2.172 MuHd_105 : 18.712 9.485 5.392 2.646 Hmax_075 : 1.983 7.583 -1.376 3.477 Hmax_095 : -5.337 -1.925 -3.449 1.348 Hmax_100 : -7.700 -1.500 -4.078 1.000 Hmax_105 : -4.550 0.467 -2.348 1.750 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9577 0.0423 DFMC : 0.9361 0.0639
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 266 PBANKA_0702700 MLNKYAENDENSNLLPGTTELIEKNAQNKFYDVLFPQISLNRIIVWISFFQIIIYILSCLLSENLTVPNVDVLIFLGATY 80 GPSVKQGELWRLLFPIFLHANWWHLIINIICILNLGLVIETKYKKKKFLLIYFLSGFIGNTLTIICNPCQLAVGASTSGF 160 GLIGCSIMEIFLAWKNLSKKAQNYYMFNICIFLVFFLFVSFSPTVDFFGHIGGFVCGAFLACHYNKFLGYDIFQECLHYG 240 FASICALIIFYLPLRLFILNMPCEFA 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .......................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0702700 4 ---MLNK|YA 0.083 . PBANKA_0702700 24 TTELIEK|NA 0.066 . PBANKA_0702700 29 EKNAQNK|FY 0.090 . PBANKA_0702700 42 PQISLNR|II 0.073 . PBANKA_0702700 85 TYGPSVK|QG 0.060 . PBANKA_0702700 91 KQGELWR|LL 0.100 . PBANKA_0702700 122 GLVIETK|YK 0.067 . PBANKA_0702700 124 VIETKYK|KK 0.057 . PBANKA_0702700 125 IETKYKK|KK 0.072 . PBANKA_0702700 126 ETKYKKK|KF 0.084 . PBANKA_0702700 127 TKYKKKK|FL 0.180 . PBANKA_0702700 175 EIFLAWK|NL 0.062 . PBANKA_0702700 179 AWKNLSK|KA 0.062 . PBANKA_0702700 180 WKNLSKK|AQ 0.110 . PBANKA_0702700 226 LACHYNK|FL 0.096 . PBANKA_0702700 255 IFYLPLR|LF 0.070 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0702700 ATGTTAAATAAATATGCAGAAAATGATGAAAATTCAAATTTGTTACCTGGGACTACTGAG CTGATTGAAAAAAATGCACAAAATAAATTTTACGATGTTTTATTTCCTCAAATATCACTA AATAGAATTATTGTATGGATTAGTTTTTTCCAAATAATAATTTATATATTGAGTTGCTTA TTAAGTGAAAACTTAACAGTTCCTAATGTAGACGTCTTGATATTCCTTGGGGCTACATAC GGACCATCTGTCAAGCAAGGAGAATTATGGAGACTATTATTTCCTATATTTTTGCACGCC AATTGGTGGCATTTAATTATAAATATTATATGCATTTTAAATTTAGGGTTAGTAATTGAG ACTAAATATAAAAAAAAAAAGTTTTTATTAATATATTTTTTATCGGGATTTATTGGAAAT ACATTAACAATAATTTGCAACCCTTGCCAATTGGCAGTTGGAGCATCAACTAGTGGGTTT GGATTAATTGGATGTTCTATCATGGAAATATTTTTAGCTTGGAAAAATTTATCGAAGAAA GCACAAAATTATTATATGTTTAATATATGTATTTTTTTAGTATTTTTTTTATTTGTAAGT TTTTCTCCAACTGTTGATTTTTTTGGCCATATAGGGGGATTTGTGTGCGGGGCTTTTTTG GCATGCCATTATAACAAATTTTTGGGATATGATATTTTTCAGGAATGTTTACATTATGGA TTTGCCTCGATTTGTGCTTTAATTATTTTTTATTTGCCACTTCGTCTATTCATTTTGAAT ATGCCATGTGAATTTGCTTAG
  • Download Fasta

  • Fasta :-

    MLNKYAENDENSNLLPGTTELIEKNAQNKFYDVLFPQISLNRIIVWISFFQIIIYILSCL LSENLTVPNVDVLIFLGATYGPSVKQGELWRLLFPIFLHANWWHLIINIICILNLGLVIE TKYKKKKFLLIYFLSGFIGNTLTIICNPCQLAVGASTSGFGLIGCSIMEIFLAWKNLSKK AQNYYMFNICIFLVFFLFVSFSPTVDFFGHIGGFVCGAFLACHYNKFLGYDIFQECLHYG FASICALIIFYLPLRLFILNMPCEFA

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PBANKA_070270      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India