PBANKA_0715600 | 26S protease regulatory subunit 6B, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0715600OTHER0.9999730.0000040.000022
No Results

  • Fasta :-

    >PBANKA_0715600 MRKMENVSKYLKEEDYYIKLKILKKQLDILNIQEEYIKEEHKNLKRELIRSKNEIKRIQS VPLIIGQFLDIIDNNYGIVSSTAGSNYYVRILSTLNKEDLKPSVSVALHRHSHSIVNILP SESDSSIQLLQVSERPNVKYTDLGGLDTQKQEMREAVELPLKSPELYEKIGIEPPMGILI YGPPGTGKTMLVKAVANETKVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIIFI DEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRP GRLDRKIEFPLPDRKQKRLIFQTIISKMNISSDVNIENFVVRTDKISAADIAAIAQESGM QAIRKNRYIITASDFEQGYRTHVRKQLRDYEFYNI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0715600.fa Sequence name : PBANKA_0715600 Sequence length : 395 VALUES OF COMPUTED PARAMETERS Coef20 : 3.349 CoefTot : 0.022 ChDiff : 5 ZoneTo : 4 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.041 1.124 0.033 0.542 MesoH : -0.690 0.270 -0.406 0.219 MuHd_075 : 4.239 2.873 1.789 1.234 MuHd_095 : 29.040 20.174 8.085 5.471 MuHd_100 : 37.702 26.305 10.373 8.101 MuHd_105 : 42.905 27.444 11.442 9.306 Hmax_075 : -16.188 -4.025 -6.147 -0.490 Hmax_095 : -5.500 6.200 -2.967 1.660 Hmax_100 : 6.700 12.000 0.165 3.800 Hmax_105 : 7.700 12.000 0.026 4.400 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8394 0.1606 DFMC : 0.8672 0.1328
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 395 PBANKA_0715600 MRKMENVSKYLKEEDYYIKLKILKKQLDILNIQEEYIKEEHKNLKRELIRSKNEIKRIQSVPLIIGQFLDIIDNNYGIVS 80 STAGSNYYVRILSTLNKEDLKPSVSVALHRHSHSIVNILPSESDSSIQLLQVSERPNVKYTDLGGLDTQKQEMREAVELP 160 LKSPELYEKIGIEPPMGILIYGPPGTGKTMLVKAVANETKVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIIFI 240 DEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRKQKRLI 320 FQTIISKMNISSDVNIENFVVRTDKISAADIAAIAQESGMQAIRKNRYIITASDFEQGYRTHVRKQLRDYEFYNI 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ........................................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0715600 2 -----MR|KM 0.090 . PBANKA_0715600 3 ----MRK|ME 0.073 . PBANKA_0715600 9 KMENVSK|YL 0.068 . PBANKA_0715600 12 NVSKYLK|EE 0.060 . PBANKA_0715600 19 EEDYYIK|LK 0.053 . PBANKA_0715600 21 DYYIKLK|IL 0.071 . PBANKA_0715600 24 IKLKILK|KQ 0.062 . PBANKA_0715600 25 KLKILKK|QL 0.105 . PBANKA_0715600 38 IQEEYIK|EE 0.060 . PBANKA_0715600 42 YIKEEHK|NL 0.062 . PBANKA_0715600 45 EEHKNLK|RE 0.054 . PBANKA_0715600 46 EHKNLKR|EL 0.136 . PBANKA_0715600 50 LKRELIR|SK 0.137 . PBANKA_0715600 52 RELIRSK|NE 0.059 . PBANKA_0715600 56 RSKNEIK|RI 0.066 . PBANKA_0715600 57 SKNEIKR|IQ 0.190 . PBANKA_0715600 90 GSNYYVR|IL 0.107 . PBANKA_0715600 97 ILSTLNK|ED 0.058 . PBANKA_0715600 101 LNKEDLK|PS 0.058 . PBANKA_0715600 110 VSVALHR|HS 0.101 . PBANKA_0715600 135 LLQVSER|PN 0.094 . PBANKA_0715600 139 SERPNVK|YT 0.076 . PBANKA_0715600 150 GGLDTQK|QE 0.058 . PBANKA_0715600 154 TQKQEMR|EA 0.091 . PBANKA_0715600 162 AVELPLK|SP 0.071 . PBANKA_0715600 169 SPELYEK|IG 0.062 . PBANKA_0715600 188 GPPGTGK|TM 0.058 . PBANKA_0715600 193 GKTMLVK|AV 0.076 . PBANKA_0715600 200 AVANETK|VT 0.075 . PBANKA_0715600 214 GSEFVQK|YL 0.136 . PBANKA_0715600 221 YLGEGPR|MV 0.154 . PBANKA_0715600 224 EGPRMVR|DV 0.294 . PBANKA_0715600 228 MVRDVFR|LA 0.120 . PBANKA_0715600 231 DVFRLAR|EN 0.259 . PBANKA_0715600 249 VDAIATK|RF 0.064 . PBANKA_0715600 250 DAIATKR|FD 0.186 . PBANKA_0715600 259 AQTGADR|EV 0.095 . PBANKA_0715600 263 ADREVQR|IL 0.115 . PBANKA_0715600 277 QMDGFDK|ST 0.080 . PBANKA_0715600 282 DKSTNVK|VI 0.070 . PBANKA_0715600 289 VIMATNR|AD 0.076 . PBANKA_0715600 299 LDPALLR|PG 0.069 . PBANKA_0715600 302 ALLRPGR|LD 0.217 . PBANKA_0715600 305 RPGRLDR|KI 0.309 . PBANKA_0715600 306 PGRLDRK|IE 0.069 . PBANKA_0715600 314 EFPLPDR|KQ 0.064 . PBANKA_0715600 315 FPLPDRK|QK 0.075 . PBANKA_0715600 317 LPDRKQK|RL 0.141 . PBANKA_0715600 318 PDRKQKR|LI 0.299 . PBANKA_0715600 327 FQTIISK|MN 0.057 . PBANKA_0715600 342 IENFVVR|TD 0.094 . PBANKA_0715600 345 FVVRTDK|IS 0.108 . PBANKA_0715600 364 SGMQAIR|KN 0.089 . PBANKA_0715600 365 GMQAIRK|NR 0.087 . PBANKA_0715600 367 QAIRKNR|YI 0.391 . PBANKA_0715600 380 DFEQGYR|TH 0.064 . PBANKA_0715600 384 GYRTHVR|KQ 0.079 . PBANKA_0715600 385 YRTHVRK|QL 0.137 . PBANKA_0715600 388 HVRKQLR|DY 0.126 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0715600 ATGAGAAAAATGGAAAATGTTAGTAAGTACCTTAAGGAGGAAGATTATTATATAAAATTG AAAATTCTGAAGAAGCAACTTGATATTTTAAATATTCAGGAAGAATATATTAAAGAGGAA CACAAAAATTTAAAAAGGGAATTGATTCGATCAAAAAATGAAATAAAAAGAATACAAAGT GTACCACTTATAATAGGTCAGTTTTTAGATATCATAGATAATAACTATGGTATAGTTAGT AGTACAGCCGGATCTAATTATTATGTTAGAATATTATCAACATTAAACAAAGAAGATTTA AAACCATCAGTTAGTGTGGCATTACACCGGCATAGTCATTCAATAGTTAATATTTTACCA TCAGAATCGGATAGTAGTATACAATTATTACAAGTTAGTGAAAGACCAAATGTTAAATAT ACGGATTTAGGAGGATTAGATACTCAAAAACAAGAAATGAGAGAAGCAGTTGAATTACCA TTAAAAAGCCCAGAATTGTATGAAAAAATTGGTATTGAACCTCCTATGGGTATATTAATT TATGGACCACCCGGTACAGGAAAAACGATGCTTGTTAAAGCTGTTGCCAATGAAACAAAA GTTACTTTTATAGGGGTTGTTGGATCAGAATTTGTTCAAAAATATTTAGGAGAAGGGCCG AGGATGGTAAGAGATGTTTTTAGATTAGCAAGAGAAAATTCGCCATCAATTATTTTTATT GATGAAGTGGATGCAATTGCAACAAAAAGATTTGATGCACAAACAGGAGCAGATAGAGAA GTTCAAAGAATTTTATTAGAGCTTTTAAACCAAATGGATGGATTTGATAAATCAACAAAT GTTAAAGTTATTATGGCAACTAACAGAGCTGATACATTAGATCCAGCTTTATTACGACCT GGTCGACTTGATCGAAAAATTGAATTCCCTTTACCCGATAGAAAACAAAAAAGATTAATT TTCCAAACTATTATTAGTAAAATGAATATTAGCAGTGATGTTAATATTGAAAACTTTGTT GTTAGAACTGATAAAATTAGTGCAGCAGATATTGCTGCAATAGCACAAGAATCTGGAATG CAAGCTATAAGAAAAAATAGATATATTATAACTGCAAGTGATTTTGAGCAAGGTTATAGA ACTCATGTTAGGAAGCAATTACGAGATTACGAATTTTATAATATATGA
  • Download Fasta

  • Fasta :-

    MRKMENVSKYLKEEDYYIKLKILKKQLDILNIQEEYIKEEHKNLKRELIRSKNEIKRIQS VPLIIGQFLDIIDNNYGIVSSTAGSNYYVRILSTLNKEDLKPSVSVALHRHSHSIVNILP SESDSSIQLLQVSERPNVKYTDLGGLDTQKQEMREAVELPLKSPELYEKIGIEPPMGILI YGPPGTGKTMLVKAVANETKVTFIGVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIIFI DEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDKSTNVKVIMATNRADTLDPALLRP GRLDRKIEFPLPDRKQKRLIFQTIISKMNISSDVNIENFVVRTDKISAADIAAIAQESGM QAIRKNRYIITASDFEQGYRTHVRKQLRDYEFYNI

  • title: ATP binding site
  • coordinates: P183,P184,G185,T186,G187,K188,T189,M190,D241,N288
No Results
No Results
No Results

PBANKA_071560      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India