PBANKA_0715900 | ubiquitin carboxyl-terminal hydrolase 13, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0715900OTHER0.9993040.0005060.000190
No Results

  • Fasta :-

    >PBANKA_0715900 MADIKSIISLISSTIKEPTKEDIIYLGECSITGHKDMFDDGIFIDLISFESFSLRNLKVN CARTNNSVTMDEHRFYLNIRKKKKVLENVEEKEIKNLNINAEGGFIDNKVYEYEYDYFVY DIKTNIYIKLSELDQNVINICNNIINHKNQIKKDNINKWINEIKESKYSKDLIQLPNIKI KNENIECAVCKSKKNLWLNLSDGYIGCGRKIYNYGGGCLNNEEGAALKHFYETGKKYPLV VKIGTITKDGNADVFSYADDENDSVIDPYIATHLNNLGINIMNLEKTEITTLEKEIQENK NINFSSILDKGIEPICEQGKVGFINLGNTCYMNCALQVLLSIKGISLKYINNLDNFLLTL DRSNKTHDDLFLQYSKLCYMAYKEDYIKNKKKYVKQFKQECQNKNIKINYDSDVDEENSV SIDPSMFRNCVNKKGNNAFCNNNQQDIYEYLSYIINELIDNENKIFDRLLNSRTTTTTET NKRKHGEIDNVTNKQEIDEKHANPYFPFDSDTILNIDKSIFNYFTFEIEQTIQSDIGNKS VSSFQNIILSLDIPIDNLLLKELEKEQNECDKTTGSENIKISLMDCLKNYIKKDNINDYY SEIENKKVQAQKDTKFKSFPPYLFIHLKRFYADENWCAKKINIPIEAHDKINLEFMRAEK NTNLDKNTNTNNICKSENNEQNILEKYKDVVDSLLDLGFEKDKIIESIKKVKIKNVNNCI SYIYGEDSVELDNTQSSNKNTEINQNNLDSIISMGISKEVAMASLLINKNDLQKSIDYIF SNMDILTESKCNAIINSNKCDDGLANYELVASIVHIGNNANSGHYICYIKDNSKWYIFND NKVGLCNGNLGKDTAYIHLYKRI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0715900.fa Sequence name : PBANKA_0715900 Sequence length : 863 VALUES OF COMPUTED PARAMETERS Coef20 : 4.164 CoefTot : 0.247 ChDiff : -17 ZoneTo : 16 KR : 2 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.965 1.588 0.117 0.536 MesoH : -0.858 0.229 -0.431 0.176 MuHd_075 : 12.042 7.964 2.437 1.084 MuHd_095 : 18.071 20.716 7.500 6.641 MuHd_100 : 24.063 22.789 8.024 7.582 MuHd_105 : 25.213 21.827 7.263 7.486 Hmax_075 : 9.800 11.667 1.365 3.337 Hmax_095 : 7.600 18.200 2.433 6.220 Hmax_100 : 18.700 22.800 4.540 7.760 Hmax_105 : 17.412 19.338 3.900 6.746 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9786 0.0214 DFMC : 0.9833 0.0167
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 863 PBANKA_0715900 MADIKSIISLISSTIKEPTKEDIIYLGECSITGHKDMFDDGIFIDLISFESFSLRNLKVNCARTNNSVTMDEHRFYLNIR 80 KKKKVLENVEEKEIKNLNINAEGGFIDNKVYEYEYDYFVYDIKTNIYIKLSELDQNVINICNNIINHKNQIKKDNINKWI 160 NEIKESKYSKDLIQLPNIKIKNENIECAVCKSKKNLWLNLSDGYIGCGRKIYNYGGGCLNNEEGAALKHFYETGKKYPLV 240 VKIGTITKDGNADVFSYADDENDSVIDPYIATHLNNLGINIMNLEKTEITTLEKEIQENKNINFSSILDKGIEPICEQGK 320 VGFINLGNTCYMNCALQVLLSIKGISLKYINNLDNFLLTLDRSNKTHDDLFLQYSKLCYMAYKEDYIKNKKKYVKQFKQE 400 CQNKNIKINYDSDVDEENSVSIDPSMFRNCVNKKGNNAFCNNNQQDIYEYLSYIINELIDNENKIFDRLLNSRTTTTTET 480 NKRKHGEIDNVTNKQEIDEKHANPYFPFDSDTILNIDKSIFNYFTFEIEQTIQSDIGNKSVSSFQNIILSLDIPIDNLLL 560 KELEKEQNECDKTTGSENIKISLMDCLKNYIKKDNINDYYSEIENKKVQAQKDTKFKSFPPYLFIHLKRFYADENWCAKK 640 INIPIEAHDKINLEFMRAEKNTNLDKNTNTNNICKSENNEQNILEKYKDVVDSLLDLGFEKDKIIESIKKVKIKNVNNCI 720 SYIYGEDSVELDNTQSSNKNTEINQNNLDSIISMGISKEVAMASLLINKNDLQKSIDYIFSNMDILTESKCNAIINSNKC 800 DDGLANYELVASIVHIGNNANSGHYICYIKDNSKWYIFNDNKVGLCNGNLGKDTAYIHLYKRI 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ............................................................... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0715900 5 --MADIK|SI 0.079 . PBANKA_0715900 16 LISSTIK|EP 0.065 . PBANKA_0715900 20 TIKEPTK|ED 0.066 . PBANKA_0715900 35 CSITGHK|DM 0.062 . PBANKA_0715900 55 FESFSLR|NL 0.088 . PBANKA_0715900 58 FSLRNLK|VN 0.096 . PBANKA_0715900 63 LKVNCAR|TN 0.100 . PBANKA_0715900 74 VTMDEHR|FY 0.089 . PBANKA_0715900 80 RFYLNIR|KK 0.095 . PBANKA_0715900 81 FYLNIRK|KK 0.067 . PBANKA_0715900 82 YLNIRKK|KK 0.086 . PBANKA_0715900 83 LNIRKKK|KV 0.456 . PBANKA_0715900 84 NIRKKKK|VL 0.163 . PBANKA_0715900 92 LENVEEK|EI 0.062 . PBANKA_0715900 95 VEEKEIK|NL 0.064 . PBANKA_0715900 109 GGFIDNK|VY 0.063 . PBANKA_0715900 123 YFVYDIK|TN 0.057 . PBANKA_0715900 129 KTNIYIK|LS 0.063 . PBANKA_0715900 148 NNIINHK|NQ 0.060 . PBANKA_0715900 152 NHKNQIK|KD 0.062 . PBANKA_0715900 153 HKNQIKK|DN 0.148 . PBANKA_0715900 158 KKDNINK|WI 0.072 . PBANKA_0715900 164 KWINEIK|ES 0.062 . PBANKA_0715900 167 NEIKESK|YS 0.063 . PBANKA_0715900 170 KESKYSK|DL 0.096 . PBANKA_0715900 179 IQLPNIK|IK 0.057 . PBANKA_0715900 181 LPNIKIK|NE 0.071 . PBANKA_0715900 191 IECAVCK|SK 0.077 . PBANKA_0715900 193 CAVCKSK|KN 0.058 . PBANKA_0715900 194 AVCKSKK|NL 0.103 . PBANKA_0715900 209 GYIGCGR|KI 0.090 . PBANKA_0715900 210 YIGCGRK|IY 0.078 . PBANKA_0715900 228 EEGAALK|HF 0.060 . PBANKA_0715900 235 HFYETGK|KY 0.061 . PBANKA_0715900 236 FYETGKK|YP 0.071 . PBANKA_0715900 242 KYPLVVK|IG 0.057 . PBANKA_0715900 248 KIGTITK|DG 0.066 . PBANKA_0715900 286 NIMNLEK|TE 0.057 . PBANKA_0715900 294 EITTLEK|EI 0.055 . PBANKA_0715900 300 KEIQENK|NI 0.055 . PBANKA_0715900 310 FSSILDK|GI 0.107 . PBANKA_0715900 320 PICEQGK|VG 0.063 . PBANKA_0715900 343 QVLLSIK|GI 0.064 . PBANKA_0715900 348 IKGISLK|YI 0.070 . PBANKA_0715900 362 FLLTLDR|SN 0.096 . PBANKA_0715900 365 TLDRSNK|TH 0.141 . PBANKA_0715900 376 LFLQYSK|LC 0.054 . PBANKA_0715900 383 LCYMAYK|ED 0.062 . PBANKA_0715900 388 YKEDYIK|NK 0.062 . PBANKA_0715900 390 EDYIKNK|KK 0.069 . PBANKA_0715900 391 DYIKNKK|KY 0.091 . PBANKA_0715900 392 YIKNKKK|YV 0.200 . PBANKA_0715900 395 NKKKYVK|QF 0.070 . PBANKA_0715900 398 KYVKQFK|QE 0.068 . PBANKA_0715900 404 KQECQNK|NI 0.068 . PBANKA_0715900 407 CQNKNIK|IN 0.068 . PBANKA_0715900 428 IDPSMFR|NC 0.070 . PBANKA_0715900 433 FRNCVNK|KG 0.072 . PBANKA_0715900 434 RNCVNKK|GN 0.107 . PBANKA_0715900 464 LIDNENK|IF 0.060 . PBANKA_0715900 468 ENKIFDR|LL 0.082 . PBANKA_0715900 473 DRLLNSR|TT 0.089 . PBANKA_0715900 482 TTTETNK|RK 0.061 . PBANKA_0715900 483 TTETNKR|KH 0.183 . PBANKA_0715900 484 TETNKRK|HG 0.097 . PBANKA_0715900 494 IDNVTNK|QE 0.071 . PBANKA_0715900 500 KQEIDEK|HA 0.072 . PBANKA_0715900 518 TILNIDK|SI 0.083 . PBANKA_0715900 539 QSDIGNK|SV 0.106 . PBANKA_0715900 561 IDNLLLK|EL 0.076 . PBANKA_0715900 565 LLKELEK|EQ 0.060 . PBANKA_0715900 572 EQNECDK|TT 0.075 . PBANKA_0715900 580 TGSENIK|IS 0.057 . PBANKA_0715900 588 SLMDCLK|NY 0.060 . PBANKA_0715900 592 CLKNYIK|KD 0.055 . PBANKA_0715900 593 LKNYIKK|DN 0.129 . PBANKA_0715900 606 YSEIENK|KV 0.084 . PBANKA_0715900 607 SEIENKK|VQ 0.085 . PBANKA_0715900 612 KKVQAQK|DT 0.073 . PBANKA_0715900 615 QAQKDTK|FK 0.064 . PBANKA_0715900 617 QKDTKFK|SF 0.101 . PBANKA_0715900 628 YLFIHLK|RF 0.069 . PBANKA_0715900 629 LFIHLKR|FY 0.252 . PBANKA_0715900 639 DENWCAK|KI 0.068 . PBANKA_0715900 640 ENWCAKK|IN 0.122 . PBANKA_0715900 650 PIEAHDK|IN 0.059 . PBANKA_0715900 657 INLEFMR|AE 0.075 . PBANKA_0715900 660 EFMRAEK|NT 0.091 . PBANKA_0715900 666 KNTNLDK|NT 0.062 . PBANKA_0715900 675 NTNNICK|SE 0.083 . PBANKA_0715900 686 EQNILEK|YK 0.072 . PBANKA_0715900 688 NILEKYK|DV 0.102 . PBANKA_0715900 701 LDLGFEK|DK 0.062 . PBANKA_0715900 703 LGFEKDK|II 0.070 . PBANKA_0715900 709 KIIESIK|KV 0.069 . PBANKA_0715900 710 IIESIKK|VK 0.082 . PBANKA_0715900 712 ESIKKVK|IK 0.066 . PBANKA_0715900 714 IKKVKIK|NV 0.105 . PBANKA_0715900 739 NTQSSNK|NT 0.071 . PBANKA_0715900 758 ISMGISK|EV 0.067 . PBANKA_0715900 769 ASLLINK|ND 0.052 . PBANKA_0715900 774 NKNDLQK|SI 0.108 . PBANKA_0715900 790 DILTESK|CN 0.056 . PBANKA_0715900 799 AIINSNK|CD 0.064 . PBANKA_0715900 830 HYICYIK|DN 0.066 . PBANKA_0715900 834 YIKDNSK|WY 0.057 . PBANKA_0715900 842 YIFNDNK|VG 0.051 . PBANKA_0715900 852 CNGNLGK|DT 0.069 . PBANKA_0715900 861 AYIHLYK|RI 0.065 . PBANKA_0715900 862 YIHLYKR|I- 0.168 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0715900 ATGGCTGATATTAAAAGCATCATATCTCTGATTTCTAGTACTATAAAAGAGCCAACCAAA GAAGATATAATTTATTTAGGAGAATGCAGTATAACGGGACATAAGGACATGTTTGACGAT GGTATTTTCATTGATTTGATATCCTTCGAAAGTTTCAGTTTAAGAAATCTGAAAGTGAAT TGCGCTCGGACAAATAACTCAGTGACAATGGACGAACATAGATTTTATTTAAATATAAGA AAGAAAAAAAAAGTGTTAGAAAATGTTGAAGAAAAAGAAATAAAAAACTTAAACATTAAT GCAGAAGGAGGGTTTATTGATAATAAAGTTTATGAATATGAATATGATTATTTTGTTTAT GATATAAAAACAAATATATATATAAAATTAAGTGAGTTAGATCAAAACGTAATAAATATA TGTAATAATATAATAAATCATAAAAATCAAATAAAGAAAGATAATATAAATAAATGGATT AATGAAATAAAAGAAAGTAAATATTCAAAAGATTTAATACAATTACCTAATATAAAAATA AAAAATGAAAACATTGAATGTGCAGTATGTAAATCTAAAAAAAATTTATGGCTAAATTTA TCTGATGGGTATATTGGATGTGGTCGAAAAATTTACAACTATGGAGGTGGATGTTTAAAT AATGAGGAAGGAGCTGCTTTAAAACATTTTTATGAAACAGGGAAAAAATATCCTTTAGTT GTTAAAATAGGAACTATAACAAAAGATGGCAATGCTGATGTTTTTTCATATGCAGATGAT GAAAATGATAGTGTAATAGATCCATATATTGCTACTCATTTAAATAATCTAGGTATAAAT ATAATGAATTTAGAAAAAACAGAAATTACTACTTTAGAAAAAGAAATCCAAGAAAATAAA AATATTAATTTCTCATCAATATTAGATAAAGGAATAGAACCTATTTGTGAACAAGGAAAA GTCGGATTTATAAATCTAGGAAATACATGTTATATGAATTGTGCATTACAAGTTTTGTTG TCCATAAAAGGAATAAGTTTAAAATACATAAATAATTTGGATAATTTCTTATTAACCTTA GATAGAAGTAATAAAACACATGACGATCTATTTCTGCAATATTCTAAGCTTTGTTATATG GCTTATAAAGAAGATTATATTAAAAACAAAAAAAAATATGTTAAACAATTTAAACAAGAA TGCCAAAATAAAAATATTAAAATTAATTATGATAGTGATGTTGATGAAGAAAATTCTGTT AGTATTGATCCAAGTATGTTTAGAAATTGTGTTAACAAAAAGGGAAACAATGCTTTTTGT AATAACAACCAACAAGATATATATGAATATCTTTCTTACATAATAAACGAATTGATAGAC AATGAAAATAAAATATTCGATCGATTATTAAACAGTAGAACGACCACAACTACAGAAACG AATAAAAGAAAACATGGGGAAATAGATAATGTAACAAATAAACAAGAAATTGATGAGAAA CATGCAAACCCTTATTTTCCTTTTGATTCGGACACTATTTTAAATATAGATAAATCAATT TTTAATTATTTCACTTTTGAAATCGAACAAACAATACAAAGTGATATAGGAAATAAAAGT GTGAGTTCTTTTCAAAACATCATATTGTCTTTAGATATACCAATTGATAATTTGTTGTTA AAAGAATTGGAAAAAGAACAAAACGAATGCGATAAAACTACAGGGTCAGAAAATATTAAA ATATCTTTAATGGATTGCTTAAAAAATTATATAAAGAAGGATAATATAAATGATTATTAC TCAGAAATAGAAAATAAAAAAGTACAAGCCCAAAAAGATACAAAGTTTAAATCTTTCCCA CCATATCTTTTTATTCATCTTAAACGATTTTATGCTGATGAAAATTGGTGTGCTAAAAAA ATTAATATACCTATTGAAGCTCATGATAAAATAAATCTAGAATTTATGAGAGCTGAGAAA AATACAAATTTGGATAAAAACACAAACACTAATAACATATGTAAAAGTGAAAATAATGAA CAAAATATTCTTGAAAAATATAAAGATGTTGTTGATTCCTTATTAGATCTAGGTTTTGAA AAAGATAAAATAATCGAATCAATTAAAAAAGTAAAAATAAAAAATGTAAATAATTGTATA TCTTATATATATGGTGAAGATTCTGTAGAATTAGATAATACTCAATCAAGTAATAAAAAT ACCGAAATCAATCAAAACAACTTAGATTCTATTATTTCAATGGGAATAAGTAAAGAAGTA GCTATGGCTTCTCTTTTAATAAATAAAAATGATCTCCAAAAGTCAATTGATTATATTTTT TCAAATATGGATATACTCACAGAGAGCAAATGCAACGCGATTATAAACAGCAACAAATGT GACGATGGATTGGCAAACTACGAATTGGTAGCATCAATTGTACACATAGGAAATAATGCA AATTCAGGTCACTACATATGTTATATCAAAGATAATTCAAAGTGGTACATATTTAATGAT AATAAGGTTGGATTATGCAATGGAAATTTGGGAAAGGATACAGCATATATTCATTTATAC AAAAGGATATAA
  • Download Fasta

  • Fasta :-

    MADIKSIISLISSTIKEPTKEDIIYLGECSITGHKDMFDDGIFIDLISFESFSLRNLKVN CARTNNSVTMDEHRFYLNIRKKKKVLENVEEKEIKNLNINAEGGFIDNKVYEYEYDYFVY DIKTNIYIKLSELDQNVINICNNIINHKNQIKKDNINKWINEIKESKYSKDLIQLPNIKI KNENIECAVCKSKKNLWLNLSDGYIGCGRKIYNYGGGCLNNEEGAALKHFYETGKKYPLV VKIGTITKDGNADVFSYADDENDSVIDPYIATHLNNLGINIMNLEKTEITTLEKEIQENK NINFSSILDKGIEPICEQGKVGFINLGNTCYMNCALQVLLSIKGISLKYINNLDNFLLTL DRSNKTHDDLFLQYSKLCYMAYKEDYIKNKKKYVKQFKQECQNKNIKINYDSDVDEENSV SIDPSMFRNCVNKKGNNAFCNNNQQDIYEYLSYIINELIDNENKIFDRLLNSRTTTTTET NKRKHGEIDNVTNKQEIDEKHANPYFPFDSDTILNIDKSIFNYFTFEIEQTIQSDIGNKS VSSFQNIILSLDIPIDNLLLKELEKEQNECDKTTGSENIKISLMDCLKNYIKKDNINDYY SEIENKKVQAQKDTKFKSFPPYLFIHLKRFYADENWCAKKINIPIEAHDKINLEFMRAEK NTNLDKNTNTNNICKSENNEQNILEKYKDVVDSLLDLGFEKDKIIESIKKVKIKNVNNCI SYIYGEDSVELDNTQSSNKNTEINQNNLDSIISMGISKEVAMASLLINKNDLQKSIDYIF SNMDILTESKCNAIINSNKCDDGLANYELVASIVHIGNNANSGHYICYIKDNSKWYIFND NKVGLCNGNLGKDTAYIHLYKRI

  • title: Active Site
  • coordinates: N325,C330,H824,D840
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_0715900601 SNDYYSEIEN0.995unspPBANKA_0715900601 SNDYYSEIEN0.995unspPBANKA_0715900601 SNDYYSEIEN0.995unspPBANKA_0715900737 SNTQSSNKNT0.996unspPBANKA_0715900264 SDENDSVIDP0.996unspPBANKA_0715900412 SINYDSDVDE0.993unsp

PBANKA_071590      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India