PBANKA_0807400 | 26S proteasome non-ATPase regulatory subunit 9, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0807400OTHER0.9999680.0000150.000016
No Results

  • Fasta :-

    >PBANKA_0807400 MEINEFNELVKQRECIENEIKENLEFLESSENKNIGMHGKLVDSEGFPRNDIDIYKIRIA RNKIICLKNDYLNINKKIEEYLHEIHSSKPVIRVERDKENYSNSNDDLNDINIKPITNIE DIEFAKNNVFALVDEIVENSPSHKAGIKLNDQIFEFANIKKEGNNININNTDNIFKKISN FMKENPSKIQLKILRQGAIYHCNIFPDKTSTGLYIGCHLVPITK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0807400.fa Sequence name : PBANKA_0807400 Sequence length : 224 VALUES OF COMPUTED PARAMETERS Coef20 : 3.275 CoefTot : 0.000 ChDiff : -5 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.188 0.571 -0.126 0.344 MesoH : -1.477 -0.308 -0.688 0.041 MuHd_075 : 32.348 19.940 9.644 5.743 MuHd_095 : 6.981 2.851 1.835 0.834 MuHd_100 : 7.242 11.923 3.182 3.031 MuHd_105 : 21.830 21.092 8.250 5.310 Hmax_075 : -5.483 6.300 -1.864 2.042 Hmax_095 : -13.300 -0.350 -4.803 0.166 Hmax_100 : -9.200 3.800 -3.162 1.100 Hmax_105 : -5.200 11.800 -1.478 2.960 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9242 0.0758 DFMC : 0.9048 0.0952
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 224 PBANKA_0807400 MEINEFNELVKQRECIENEIKENLEFLESSENKNIGMHGKLVDSEGFPRNDIDIYKIRIARNKIICLKNDYLNINKKIEE 80 YLHEIHSSKPVIRVERDKENYSNSNDDLNDINIKPITNIEDIEFAKNNVFALVDEIVENSPSHKAGIKLNDQIFEFANIK 160 KEGNNININNTDNIFKKISNFMKENPSKIQLKILRQGAIYHCNIFPDKTSTGLYIGCHLVPITK 240 ................................................................................ 80 ................................................................................ 160 ................................................................ 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0807400 11 EFNELVK|QR 0.073 . PBANKA_0807400 13 NELVKQR|EC 0.100 . PBANKA_0807400 21 CIENEIK|EN 0.059 . PBANKA_0807400 33 LESSENK|NI 0.090 . PBANKA_0807400 40 NIGMHGK|LV 0.094 . PBANKA_0807400 49 DSEGFPR|ND 0.086 . PBANKA_0807400 56 NDIDIYK|IR 0.059 . PBANKA_0807400 58 IDIYKIR|IA 0.125 . PBANKA_0807400 61 YKIRIAR|NK 0.235 . PBANKA_0807400 63 IRIARNK|II 0.074 . PBANKA_0807400 68 NKIICLK|ND 0.057 . PBANKA_0807400 76 DYLNINK|KI 0.063 . PBANKA_0807400 77 YLNINKK|IE 0.092 . PBANKA_0807400 89 HEIHSSK|PV 0.101 . PBANKA_0807400 93 SSKPVIR|VE 0.122 . PBANKA_0807400 96 PVIRVER|DK 0.307 . PBANKA_0807400 98 IRVERDK|EN 0.065 . PBANKA_0807400 114 LNDINIK|PI 0.072 . PBANKA_0807400 126 EDIEFAK|NN 0.065 . PBANKA_0807400 144 ENSPSHK|AG 0.079 . PBANKA_0807400 148 SHKAGIK|LN 0.069 . PBANKA_0807400 160 FEFANIK|KE 0.059 . PBANKA_0807400 161 EFANIKK|EG 0.083 . PBANKA_0807400 176 NTDNIFK|KI 0.065 . PBANKA_0807400 177 TDNIFKK|IS 0.113 . PBANKA_0807400 183 KISNFMK|EN 0.073 . PBANKA_0807400 188 MKENPSK|IQ 0.079 . PBANKA_0807400 192 PSKIQLK|IL 0.076 . PBANKA_0807400 195 IQLKILR|QG 0.075 . PBANKA_0807400 208 CNIFPDK|TS 0.059 . PBANKA_0807400 224 HLVPITK|-- 0.061 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0807400 ATGGAGATAAACGAATTCAATGAACTTGTAAAACAGCGTGAATGCATAGAAAATGAGATA AAAGAAAATCTCGAATTTTTAGAAAGTTCTGAAAATAAGAATATTGGAATGCATGGAAAA TTAGTAGATTCAGAAGGGTTCCCACGTAATGATATAGACATATATAAAATTCGAATTGCC AGAAATAAAATAATATGTCTAAAAAATGACTATTTAAATATAAATAAGAAAATAGAAGAG TACTTACATGAAATACATAGCTCAAAACCAGTTATAAGAGTAGAAAGGGATAAAGAAAAT TATTCAAATAGCAACGACGATTTAAATGATATTAATATTAAGCCAATAACTAACATAGAG GATATTGAATTTGCAAAAAATAATGTTTTTGCTTTGGTCGATGAAATTGTGGAAAATTCC CCATCTCATAAAGCGGGCATAAAACTTAATGATCAAATTTTCGAATTTGCAAATATAAAA AAAGAGGGAAATAATATTAATATAAATAATACAGATAATATATTTAAAAAAATATCGAAT TTTATGAAAGAAAACCCTTCAAAAATTCAACTCAAAATTCTAAGACAGGGAGCTATATAT CATTGTAACATATTTCCTGATAAAACATCTACAGGTTTATATATTGGATGTCACTTGGTA CCAATAACAAAATGA
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  • Fasta :-

    MEINEFNELVKQRECIENEIKENLEFLESSENKNIGMHGKLVDSEGFPRNDIDIYKIRIA RNKIICLKNDYLNINKKIEEYLHEIHSSKPVIRVERDKENYSNSNDDLNDINIKPITNIE DIEFAKNNVFALVDEIVENSPSHKAGIKLNDQIFEFANIKKEGNNININNTDNIFKKISN FMKENPSKIQLKILRQGAIYHCNIFPDKTSTGLYIGCHLVPITK

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PBANKA_080740      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India