PBANKA_0808900 | ATP-dependent protease ATPase subunit ClpY, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0808900OTHER0.9114760.0002480.088276
No Results

  • Fasta :-

    >PBANKA_0808900 MKKLHVHKYIKLINFLNKKQKCVSLNFNNVINKAQNKDIHNYQNSIKIEVLNNGVEQNDK INNDNKNNGKNDGKNNYFFPNGGKGRKHTSLLTDPKYKNNDLVIKINYKTHEEMGKFDSI QFGKLKNNNLKEAEFKLKKAIMFMNPNTKIDSEFSKNESQNAKQQRHDCEKYKSMYINNN IENYSNVIKKNRVDIFNNLENVKKLKYCEYFASNNINRNNSEEIPKTENINCINKEIDEN KIKSNNVNGNNNKYNETNCEEFETCAKVKITKENIINMNEIKKIENDENINQEKKIEHNE SENNMKNDEIGENSIKNDENNKTNEKTTKKNNKCLYPHEIVEYLNKYIIGQSEAKKVVAN ALRQRWRRTQLDDDMKKDVIPKNILMIGPTGVGKTEIARRISMFIDAPFIKVEATKFTEV GFHGKDVDQIIKDLVEIAVKRQKSKMENEIKEQAEETVDNIILYSLLGNSIKYEEKQIWK KYLKEGLLDDKIINIDIPSYINNNNNMFTNDSVENAVKEALSNHQNIKSVKIIHQNMNKQ NDKRTMTIKEAKQKLLQIEIDSSINQDVILKTAINSVEEEGIVFIDEIDKICSKSSSSYN GPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILFIASGAFQRVKPNDMLNELQGRLPV HVNLSSLSIQDFIEILTKTHNNLLKQNIALLKTEGIDLNFTDDAIESIANAAHDMNTHIE NIGVRRLHTIIEKIMEEINYDVHKNANKSIVIDKEVVKKSLEGFIKQFDLKKYII
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0808900.fa Sequence name : PBANKA_0808900 Sequence length : 775 VALUES OF COMPUTED PARAMETERS Coef20 : 3.491 CoefTot : -2.159 ChDiff : 8 ZoneTo : 37 KR : 9 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.629 0.971 -0.100 0.462 MesoH : -0.826 0.222 -0.426 0.180 MuHd_075 : 30.143 16.150 8.594 5.893 MuHd_095 : 35.213 25.527 11.667 7.723 MuHd_100 : 29.418 21.111 9.277 6.956 MuHd_105 : 38.118 29.152 13.100 9.373 Hmax_075 : 5.833 4.667 -2.242 3.687 Hmax_095 : 10.800 16.500 2.925 4.930 Hmax_100 : 11.300 15.200 1.459 5.210 Hmax_105 : 4.400 15.300 1.112 4.560 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0402 0.9598 DFMC : 0.0750 0.9250 This protein is probably imported in mitochondria. f(Ser) = 0.0270 f(Arg) = 0.0000 CMi = 0.38610 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 775 PBANKA_0808900 MKKLHVHKYIKLINFLNKKQKCVSLNFNNVINKAQNKDIHNYQNSIKIEVLNNGVEQNDKINNDNKNNGKNDGKNNYFFP 80 NGGKGRKHTSLLTDPKYKNNDLVIKINYKTHEEMGKFDSIQFGKLKNNNLKEAEFKLKKAIMFMNPNTKIDSEFSKNESQ 160 NAKQQRHDCEKYKSMYINNNIENYSNVIKKNRVDIFNNLENVKKLKYCEYFASNNINRNNSEEIPKTENINCINKEIDEN 240 KIKSNNVNGNNNKYNETNCEEFETCAKVKITKENIINMNEIKKIENDENINQEKKIEHNESENNMKNDEIGENSIKNDEN 320 NKTNEKTTKKNNKCLYPHEIVEYLNKYIIGQSEAKKVVANALRQRWRRTQLDDDMKKDVIPKNILMIGPTGVGKTEIARR 400 ISMFIDAPFIKVEATKFTEVGFHGKDVDQIIKDLVEIAVKRQKSKMENEIKEQAEETVDNIILYSLLGNSIKYEEKQIWK 480 KYLKEGLLDDKIINIDIPSYINNNNNMFTNDSVENAVKEALSNHQNIKSVKIIHQNMNKQNDKRTMTIKEAKQKLLQIEI 560 DSSINQDVILKTAINSVEEEGIVFIDEIDKICSKSSSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILFIASG 640 AFQRVKPNDMLNELQGRLPVHVNLSSLSIQDFIEILTKTHNNLLKQNIALLKTEGIDLNFTDDAIESIANAAHDMNTHIE 720 NIGVRRLHTIIEKIMEEINYDVHKNANKSIVIDKEVVKKSLEGFIKQFDLKKYII 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ....................................................... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0808900 2 -----MK|KL 0.068 . PBANKA_0808900 3 ----MKK|LH 0.080 . PBANKA_0808900 8 KKLHVHK|YI 0.071 . PBANKA_0808900 11 HVHKYIK|LI 0.060 . PBANKA_0808900 18 LINFLNK|KQ 0.062 . PBANKA_0808900 19 INFLNKK|QK 0.094 . PBANKA_0808900 21 FLNKKQK|CV 0.112 . PBANKA_0808900 33 FNNVINK|AQ 0.070 . PBANKA_0808900 37 INKAQNK|DI 0.099 . PBANKA_0808900 47 NYQNSIK|IE 0.057 . PBANKA_0808900 60 GVEQNDK|IN 0.060 . PBANKA_0808900 66 KINNDNK|NN 0.072 . PBANKA_0808900 70 DNKNNGK|ND 0.067 . PBANKA_0808900 74 NGKNDGK|NN 0.061 . PBANKA_0808900 84 FFPNGGK|GR 0.052 . PBANKA_0808900 86 PNGGKGR|KH 0.098 . PBANKA_0808900 87 NGGKGRK|HT 0.080 . PBANKA_0808900 96 SLLTDPK|YK 0.064 . PBANKA_0808900 98 LTDPKYK|NN 0.066 . PBANKA_0808900 105 NNDLVIK|IN 0.062 . PBANKA_0808900 109 VIKINYK|TH 0.060 . PBANKA_0808900 116 THEEMGK|FD 0.081 . PBANKA_0808900 124 DSIQFGK|LK 0.065 . PBANKA_0808900 126 IQFGKLK|NN 0.067 . PBANKA_0808900 131 LKNNNLK|EA 0.081 . PBANKA_0808900 136 LKEAEFK|LK 0.073 . PBANKA_0808900 138 EAEFKLK|KA 0.068 . PBANKA_0808900 139 AEFKLKK|AI 0.097 . PBANKA_0808900 149 FMNPNTK|ID 0.063 . PBANKA_0808900 156 IDSEFSK|NE 0.084 . PBANKA_0808900 163 NESQNAK|QQ 0.067 . PBANKA_0808900 166 QNAKQQR|HD 0.154 . PBANKA_0808900 171 QRHDCEK|YK 0.084 . PBANKA_0808900 173 HDCEKYK|SM 0.092 . PBANKA_0808900 189 NYSNVIK|KN 0.067 . PBANKA_0808900 190 YSNVIKK|NR 0.131 . PBANKA_0808900 192 NVIKKNR|VD 0.075 . PBANKA_0808900 203 NNLENVK|KL 0.058 . PBANKA_0808900 204 NLENVKK|LK 0.089 . PBANKA_0808900 206 ENVKKLK|YC 0.070 . PBANKA_0808900 218 ASNNINR|NN 0.123 . PBANKA_0808900 226 NSEEIPK|TE 0.056 . PBANKA_0808900 235 NINCINK|EI 0.065 . PBANKA_0808900 241 KEIDENK|IK 0.070 . PBANKA_0808900 243 IDENKIK|SN 0.086 . PBANKA_0808900 253 VNGNNNK|YN 0.071 . PBANKA_0808900 267 EFETCAK|VK 0.061 . PBANKA_0808900 269 ETCAKVK|IT 0.073 . PBANKA_0808900 272 AKVKITK|EN 0.066 . PBANKA_0808900 282 INMNEIK|KI 0.077 . PBANKA_0808900 283 NMNEIKK|IE 0.089 . PBANKA_0808900 294 ENINQEK|KI 0.078 . PBANKA_0808900 295 NINQEKK|IE 0.085 . PBANKA_0808900 306 ESENNMK|ND 0.086 . PBANKA_0808900 316 IGENSIK|ND 0.061 . PBANKA_0808900 322 KNDENNK|TN 0.058 . PBANKA_0808900 326 NNKTNEK|TT 0.059 . PBANKA_0808900 329 TNEKTTK|KN 0.077 . PBANKA_0808900 330 NEKTTKK|NN 0.084 . PBANKA_0808900 333 TTKKNNK|CL 0.083 . PBANKA_0808900 346 IVEYLNK|YI 0.066 . PBANKA_0808900 355 IGQSEAK|KV 0.075 . PBANKA_0808900 356 GQSEAKK|VV 0.180 . PBANKA_0808900 363 VVANALR|QR 0.069 . PBANKA_0808900 365 ANALRQR|WR 0.103 . PBANKA_0808900 367 ALRQRWR|RT 0.092 . PBANKA_0808900 368 LRQRWRR|TQ 0.390 . PBANKA_0808900 376 QLDDDMK|KD 0.054 . PBANKA_0808900 377 LDDDMKK|DV 0.158 . PBANKA_0808900 382 KKDVIPK|NI 0.073 . PBANKA_0808900 394 GPTGVGK|TE 0.062 . PBANKA_0808900 399 GKTEIAR|RI 0.095 . PBANKA_0808900 400 KTEIARR|IS 0.132 . PBANKA_0808900 411 IDAPFIK|VE 0.063 . PBANKA_0808900 416 IKVEATK|FT 0.103 . PBANKA_0808900 425 EVGFHGK|DV 0.148 . PBANKA_0808900 432 DVDQIIK|DL 0.057 . PBANKA_0808900 440 LVEIAVK|RQ 0.055 . PBANKA_0808900 441 VEIAVKR|QK 0.246 . PBANKA_0808900 443 IAVKRQK|SK 0.085 . PBANKA_0808900 445 VKRQKSK|ME 0.079 . PBANKA_0808900 451 KMENEIK|EQ 0.059 . PBANKA_0808900 472 LLGNSIK|YE 0.076 . PBANKA_0808900 476 SIKYEEK|QI 0.068 . PBANKA_0808900 480 EEKQIWK|KY 0.057 . PBANKA_0808900 481 EKQIWKK|YL 0.133 . PBANKA_0808900 484 IWKKYLK|EG 0.052 . PBANKA_0808900 491 EGLLDDK|II 0.061 . PBANKA_0808900 518 SVENAVK|EA 0.059 . PBANKA_0808900 528 SNHQNIK|SV 0.150 . PBANKA_0808900 531 QNIKSVK|II 0.083 . PBANKA_0808900 539 IHQNMNK|QN 0.071 . PBANKA_0808900 543 MNKQNDK|RT 0.068 . PBANKA_0808900 544 NKQNDKR|TM 0.204 . PBANKA_0808900 549 KRTMTIK|EA 0.093 . PBANKA_0808900 552 MTIKEAK|QK 0.063 . PBANKA_0808900 554 IKEAKQK|LL 0.077 . PBANKA_0808900 571 NQDVILK|TA 0.061 . PBANKA_0808900 590 FIDEIDK|IC 0.057 . PBANKA_0808900 594 IDKICSK|SS 0.071 . PBANKA_0808900 611 SAEGVQR|DL 0.110 . PBANKA_0808900 625 GCVINTK|YG 0.062 . PBANKA_0808900 644 ASGAFQR|VK 0.073 . PBANKA_0808900 646 GAFQRVK|PN 0.064 . PBANKA_0808900 657 LNELQGR|LP 0.076 . PBANKA_0808900 678 FIEILTK|TH 0.059 . PBANKA_0808900 685 THNNLLK|QN 0.090 . PBANKA_0808900 692 QNIALLK|TE 0.065 . PBANKA_0808900 725 IENIGVR|RL 0.098 . PBANKA_0808900 726 ENIGVRR|LH 0.146 . PBANKA_0808900 733 LHTIIEK|IM 0.061 . PBANKA_0808900 744 INYDVHK|NA 0.084 . PBANKA_0808900 748 VHKNANK|SI 0.071 . PBANKA_0808900 754 KSIVIDK|EV 0.075 . PBANKA_0808900 758 IDKEVVK|KS 0.060 . PBANKA_0808900 759 DKEVVKK|SL 0.228 . PBANKA_0808900 766 SLEGFIK|QF 0.066 . PBANKA_0808900 771 IKQFDLK|KY 0.067 . PBANKA_0808900 772 KQFDLKK|YI 0.112 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0808900 ATGAAAAAACTTCATGTTCATAAATATATTAAGCTAATTAATTTTTTAAATAAAAAACAA AAATGTGTTTCTCTTAATTTTAACAATGTAATAAATAAAGCCCAAAATAAAGATATTCAT AATTATCAAAATTCAATAAAAATAGAGGTATTAAATAATGGTGTAGAGCAAAATGATAAA ATAAATAACGACAATAAAAATAATGGTAAAAATGATGGTAAAAATAATTATTTCTTTCCA AATGGAGGAAAAGGAAGAAAGCATACTTCTTTATTAACAGACCCGAAATACAAAAATAAC GATTTGGTAATTAAAATAAATTACAAAACACATGAAGAAATGGGAAAGTTCGATTCAATA CAATTTGGAAAATTAAAAAATAATAATTTAAAAGAGGCTGAATTTAAATTGAAAAAAGCT ATTATGTTTATGAATCCTAATACTAAAATCGATTCTGAATTTTCCAAAAATGAATCACAA AATGCAAAGCAACAAAGACATGACTGTGAAAAATACAAGTCAATGTACATAAATAATAAT ATTGAGAATTATTCAAATGTAATAAAAAAAAACAGAGTTGACATATTTAACAATTTAGAA AATGTAAAAAAGTTAAAATATTGTGAATATTTCGCAAGTAATAATATAAACAGAAATAAC TCTGAAGAAATCCCCAAAACAGAAAACATAAATTGCATAAATAAAGAAATAGATGAAAAT AAAATAAAATCAAATAATGTAAATGGAAATAATAATAAATATAATGAAACAAATTGTGAA GAATTTGAAACTTGCGCTAAAGTAAAAATTACCAAAGAAAATATTATAAATATGAATGAA ATAAAAAAAATTGAAAATGATGAAAATATAAATCAAGAAAAAAAAATCGAACATAACGAA AGTGAGAATAATATGAAAAATGACGAAATTGGTGAAAATAGTATAAAAAATGACGAAAAT AATAAAACAAATGAAAAAACAACAAAAAAAAATAATAAATGTTTATATCCCCATGAAATA GTAGAATATTTAAATAAATATATAATAGGACAATCAGAAGCAAAAAAAGTTGTGGCAAAT GCATTAAGACAAAGATGGAGACGAACCCAACTTGATGACGATATGAAAAAAGATGTAATT CCTAAAAATATATTAATGATAGGACCAACAGGTGTAGGCAAAACTGAAATTGCTAGAAGA ATATCTATGTTTATAGATGCACCTTTTATTAAAGTAGAAGCAACTAAGTTTACAGAAGTT GGTTTTCACGGAAAAGATGTAGATCAAATAATTAAAGATTTAGTCGAAATTGCAGTAAAA AGACAAAAAAGTAAAATGGAAAATGAAATAAAAGAACAAGCAGAAGAAACTGTAGATAAT ATAATATTATACTCTCTTTTAGGAAATAGTATAAAATATGAAGAAAAACAAATTTGGAAA AAATATTTAAAAGAAGGATTATTAGATGATAAAATTATAAATATTGATATACCAAGTTAT ATAAATAATAATAATAATATGTTTACAAATGATTCTGTTGAAAATGCTGTAAAAGAAGCA TTAAGTAATCATCAAAATATAAAAAGTGTTAAAATAATACATCAAAATATGAACAAACAA AATGATAAAAGAACAATGACAATAAAAGAAGCAAAACAAAAACTATTACAAATAGAAATA GATTCATCTATTAATCAAGATGTGATTCTTAAAACAGCGATAAATTCTGTTGAAGAAGAA GGAATAGTATTTATTGATGAAATAGATAAAATATGTTCAAAATCTTCTTCATCTTATAAT GGACCAGATGCAAGTGCTGAAGGAGTTCAGCGCGATCTGTTACCTTTAATTGAAGGGTGT GTTATAAACACAAAATATGGAAATATAAATACAAATTATATTTTGTTTATTGCATCAGGA GCTTTTCAAAGAGTTAAACCAAATGATATGTTAAATGAATTACAAGGAAGGTTGCCTGTG CATGTAAATTTATCAAGTTTATCTATACAAGATTTTATAGAAATTTTAACAAAAACACAT AATAATTTATTAAAACAAAATATAGCTTTATTAAAAACAGAAGGTATTGATCTTAATTTT ACGGATGATGCAATTGAATCTATTGCAAATGCTGCACATGATATGAATACACATATAGAG AATATTGGAGTTCGACGATTGCACACAATTATTGAAAAAATAATGGAGGAAATCAATTAT GATGTTCATAAAAATGCTAACAAGTCAATAGTAATTGATAAAGAGGTTGTTAAAAAATCT CTAGAAGGTTTTATCAAACAGTTTGACTTGAAAAAATACATAATTTAG
  • Download Fasta

  • Fasta :-

    MKKLHVHKYIKLINFLNKKQKCVSLNFNNVINKAQNKDIHNYQNSIKIEVLNNGVEQNDK INNDNKNNGKNDGKNNYFFPNGGKGRKHTSLLTDPKYKNNDLVIKINYKTHEEMGKFDSI QFGKLKNNNLKEAEFKLKKAIMFMNPNTKIDSEFSKNESQNAKQQRHDCEKYKSMYINNN IENYSNVIKKNRVDIFNNLENVKKLKYCEYFASNNINRNNSEEIPKTENINCINKEIDEN KIKSNNVNGNNNKYNETNCEEFETCAKVKITKENIINMNEIKKIENDENINQEKKIEHNE SENNMKNDEIGENSIKNDENNKTNEKTTKKNNKCLYPHEIVEYLNKYIIGQSEAKKVVAN ALRQRWRRTQLDDDMKKDVIPKNILMIGPTGVGKTEIARRISMFIDAPFIKVEATKFTEV GFHGKDVDQIIKDLVEIAVKRQKSKMENEIKEQAEETVDNIILYSLLGNSIKYEEKQIWK KYLKEGLLDDKIINIDIPSYINNNNNMFTNDSVENAVKEALSNHQNIKSVKIIHQNMNKQ NDKRTMTIKEAKQKLLQIEIDSSINQDVILKTAINSVEEEGIVFIDEIDKICSKSSSSYN GPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILFIASGAFQRVKPNDMLNELQGRLPV HVNLSSLSIQDFIEILTKTHNNLLKQNIALLKTEGIDLNFTDDAIESIANAAHDMNTHIE NIGVRRLHTIIEKIMEEINYDVHKNANKSIVIDKEVVKKSLEGFIKQFDLKKYII

  • title: ATP binding site
  • coordinates: P389,T390,G391,V392,G393,K394,T395,E396
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_0808900547 TKRTMTIKEA0.995unspPBANKA_0808900547 TKRTMTIKEA0.995unspPBANKA_0808900547 TKRTMTIKEA0.995unspPBANKA_0808900598 SKSSSSYNGP0.99unspPBANKA_0808900221 SNRNNSEEIP0.996unspPBANKA_0808900444 SKRQKSKMEN0.997unsp

PBANKA_080890      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India