PBANKA_0813900 | 26S proteasome regulatory subunit RPN8, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0000502      

  • Curated_GO_Components:  proteasome complex      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0813900OTHER0.9996940.0000630.000243
No Results

  • Fasta :-

    >PBANKA_0813900 MENDIFEKNINVLERIYLSKHVVVHPIVLLSVVDHYNRIASNTKKRVLGTILGEKIDGVV HITNSYALPFDEDIKDINIFFIDDNYNENLFNMIRKINTREKILGWYTTGSNIKPNDIFI NEIFYKYHHAPIFLLVNVHTNQTIFPVNAYVAIEKAISNNKFRKTFIHIPVRIGAFEAED VGVEFLLKELKSVSTSTLATKVGDKLSSLKTLISKLYEISEYLNDILQGNIEMNIKILYN LQNVFSLLPDTDNPELVEAFMVKNNDIMLNIFIGSITRSVIALHNLINNKIENKINTEKK QLLEDQNIKEKEKEKTKEK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0813900.fa Sequence name : PBANKA_0813900 Sequence length : 319 VALUES OF COMPUTED PARAMETERS Coef20 : 3.621 CoefTot : 0.000 ChDiff : -2 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.100 1.771 0.162 0.562 MesoH : -0.720 0.377 -0.478 0.238 MuHd_075 : 13.869 9.521 4.441 2.337 MuHd_095 : 35.687 21.228 9.037 7.957 MuHd_100 : 32.587 19.503 8.554 7.092 MuHd_105 : 28.458 16.764 7.820 5.865 Hmax_075 : -4.433 6.650 -2.604 2.047 Hmax_095 : 2.100 9.275 -1.220 3.920 Hmax_100 : 2.300 12.800 -0.717 4.680 Hmax_105 : 8.400 12.800 0.721 5.343 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8833 0.1167 DFMC : 0.9593 0.0407
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 319 PBANKA_0813900 MENDIFEKNINVLERIYLSKHVVVHPIVLLSVVDHYNRIASNTKKRVLGTILGEKIDGVVHITNSYALPFDEDIKDINIF 80 FIDDNYNENLFNMIRKINTREKILGWYTTGSNIKPNDIFINEIFYKYHHAPIFLLVNVHTNQTIFPVNAYVAIEKAISNN 160 KFRKTFIHIPVRIGAFEAEDVGVEFLLKELKSVSTSTLATKVGDKLSSLKTLISKLYEISEYLNDILQGNIEMNIKILYN 240 LQNVFSLLPDTDNPELVEAFMVKNNDIMLNIFIGSITRSVIALHNLINNKIENKINTEKKQLLEDQNIKEKEKEKTKEK 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0

  • Fasta :-

    >PBANKA_0813900 ATGGAAAATGATATATTTGAGAAAAATATAAATGTGCTTGAAAGGATATATTTAAGCAAA CATGTCGTAGTACATCCTATAGTATTATTATCAGTAGTAGACCATTACAATCGTATTGCA AGTAATACAAAAAAAAGAGTTTTAGGTACAATTTTAGGAGAAAAAATTGATGGTGTTGTG CATATAACAAATAGCTATGCATTACCATTTGATGAAGATATTAAAGATATAAATATATTT TTTATAGATGATAATTATAATGAAAATTTGTTTAATATGATAAGAAAAATTAATACACGT GAAAAAATTCTTGGATGGTATACTACTGGATCTAATATAAAACCCAACGATATATTTATT AACGAAATATTTTATAAATATCATCATGCTCCTATATTTTTACTTGTCAATGTGCACACA AATCAAACTATTTTCCCAGTAAATGCGTATGTAGCTATAGAAAAGGCTATTTCGAATAAT AAATTTAGAAAGACATTTATTCATATACCAGTTAGAATAGGTGCATTTGAAGCAGAAGAT GTTGGTGTTGAATTTTTGCTAAAGGAATTAAAAAGCGTATCAACCTCAACCCTAGCAACA AAAGTTGGTGATAAATTATCGTCACTAAAAACATTAATATCTAAATTATATGAAATTTCT GAATATTTAAATGATATATTACAAGGGAATATAGAAATGAATATAAAAATATTATACAAT TTACAAAATGTTTTTAGTTTATTACCTGACACTGATAATCCAGAACTTGTCGAAGCCTTT ATGGTTAAGAACAATGATATTATGTTAAACATATTTATAGGTAGCATTACACGATCTGTT ATAGCTCTTCACAATCTTATTAATAATAAAATAGAAAATAAAATAAATACAGAAAAAAAA CAACTTTTAGAGGATCAAAATATTAAAGAAAAAGAAAAAGAAAAAACCAAGGAAAAATAA
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  • Fasta :-

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PBANKA_081390      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India