PBANKA_0824000 | OTU domain-containing protein, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0005737      

  • Curated_GO_Components:  cytoplasm      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:  protein deubiquitination      

_IDPredictionOTHERSPmTPCS_Position
PBANKA_0824000OTHER0.9890580.0001450.010796
No Results

  • Fasta :-

    >PBANKA_0824000 MINFLIIKWKKIKYKYMTTKLKIAKRNENDDKIEQKINNNLNINNFEYILNSIQESKQRN IIKKYSTLDRYISFLLKNKLNKENYKYKRNILQVHLLAIGCELVKIIGDGNCLFRSISYN LFGKQIYHMYIRQACVDYMLKYKNEYSIYFEEGKFTKYIKNMLNDGYWGDELCIKAIADT FDCVVYIITSNPDKWLLKYEPKCKNNYQPKKCVFLAYSSPIHYDSLKLIKM
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0824000.fa Sequence name : PBANKA_0824000 Sequence length : 231 VALUES OF COMPUTED PARAMETERS Coef20 : 4.101 CoefTot : -0.966 ChDiff : 18 ZoneTo : 27 KR : 9 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.547 1.847 0.144 0.594 MesoH : -1.087 0.096 -0.497 0.152 MuHd_075 : 33.528 15.309 9.230 6.230 MuHd_095 : 30.364 16.625 8.005 7.410 MuHd_100 : 22.938 11.903 5.640 5.721 MuHd_105 : 17.319 9.021 5.078 3.986 Hmax_075 : -2.450 2.800 -4.027 1.015 Hmax_095 : 1.400 4.000 -2.131 2.940 Hmax_100 : -8.300 0.800 -5.044 1.490 Hmax_105 : -0.233 6.700 -2.798 2.707 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4796 0.5204 DFMC : 0.7573 0.2427
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 231 PBANKA_0824000 MINFLIIKWKKIKYKYMTTKLKIAKRNENDDKIEQKINNNLNINNFEYILNSIQESKQRNIIKKYSTLDRYISFLLKNKL 80 NKENYKYKRNILQVHLLAIGCELVKIIGDGNCLFRSISYNLFGKQIYHMYIRQACVDYMLKYKNEYSIYFEEGKFTKYIK 160 NMLNDGYWGDELCIKAIADTFDCVVYIITSNPDKWLLKYEPKCKNNYQPKKCVFLAYSSPIHYDSLKLIKM 240 ................................................................................ 80 ................................................................................ 160 ....................................................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0824000 8 INFLIIK|WK 0.061 . PBANKA_0824000 10 FLIIKWK|KI 0.084 . PBANKA_0824000 11 LIIKWKK|IK 0.112 . PBANKA_0824000 13 IKWKKIK|YK 0.070 . PBANKA_0824000 15 WKKIKYK|YM 0.098 . PBANKA_0824000 20 YKYMTTK|LK 0.070 . PBANKA_0824000 22 YMTTKLK|IA 0.067 . PBANKA_0824000 25 TKLKIAK|RN 0.066 . PBANKA_0824000 26 KLKIAKR|NE 0.134 . PBANKA_0824000 32 RNENDDK|IE 0.068 . PBANKA_0824000 36 DDKIEQK|IN 0.061 . PBANKA_0824000 57 NSIQESK|QR 0.062 . PBANKA_0824000 59 IQESKQR|NI 0.122 . PBANKA_0824000 63 KQRNIIK|KY 0.077 . PBANKA_0824000 64 QRNIIKK|YS 0.134 . PBANKA_0824000 70 KYSTLDR|YI 0.142 . PBANKA_0824000 77 YISFLLK|NK 0.062 . PBANKA_0824000 79 SFLLKNK|LN 0.055 . PBANKA_0824000 82 LKNKLNK|EN 0.072 . PBANKA_0824000 86 LNKENYK|YK 0.075 . PBANKA_0824000 88 KENYKYK|RN 0.073 . PBANKA_0824000 89 ENYKYKR|NI 0.203 . PBANKA_0824000 105 IGCELVK|II 0.073 . PBANKA_0824000 115 DGNCLFR|SI 0.192 . PBANKA_0824000 124 SYNLFGK|QI 0.071 . PBANKA_0824000 132 IYHMYIR|QA 0.096 . PBANKA_0824000 141 CVDYMLK|YK 0.054 . PBANKA_0824000 143 DYMLKYK|NE 0.061 . PBANKA_0824000 154 IYFEEGK|FT 0.071 . PBANKA_0824000 157 EEGKFTK|YI 0.079 . PBANKA_0824000 160 KFTKYIK|NM 0.057 . PBANKA_0824000 175 GDELCIK|AI 0.072 . PBANKA_0824000 194 ITSNPDK|WL 0.077 . PBANKA_0824000 198 PDKWLLK|YE 0.060 . PBANKA_0824000 202 LLKYEPK|CK 0.066 . PBANKA_0824000 204 KYEPKCK|NN 0.062 . PBANKA_0824000 210 KNNYQPK|KC 0.065 . PBANKA_0824000 211 NNYQPKK|CV 0.152 . PBANKA_0824000 227 IHYDSLK|LI 0.065 . PBANKA_0824000 230 DSLKLIK|M- 0.063 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0824000 ATGATAAACTTCTTGATAATAAAATGGAAAAAAATAAAATACAAGTATATGACAACGAAA TTGAAAATTGCAAAACGGAATGAAAATGATGATAAAATAGAACAAAAAATAAATAATAAT TTAAATATAAATAATTTTGAATATATATTAAACTCTATACAAGAATCAAAACAAAGAAAT ATAATAAAAAAATATAGCACTCTAGATAGATATATATCATTTTTATTAAAAAATAAATTA AATAAAGAGAATTATAAATATAAAAGGAATATATTACAAGTTCATTTATTAGCCATAGGT TGTGAATTGGTTAAAATAATAGGAGATGGAAATTGTTTATTTCGATCTATTTCATATAAT TTATTTGGAAAGCAAATATATCATATGTATATCCGTCAAGCATGTGTTGATTATATGTTA AAATATAAAAACGAATATTCTATATATTTTGAAGAAGGAAAATTTACTAAATATATAAAA AATATGTTAAATGATGGGTATTGGGGTGATGAATTATGTATTAAAGCCATAGCTGATACT TTTGATTGTGTTGTATATATAATAACATCAAATCCTGATAAATGGCTTTTAAAATATGAA CCGAAATGTAAAAATAATTATCAACCAAAGAAATGTGTTTTTTTGGCTTATTCGAGTCCT ATTCATTATGACTCGCTCAAATTAATAAAAATGTGA
  • Download Fasta

  • Fasta :-

    MINFLIIKWKKIKYKYMTTKLKIAKRNENDDKIEQKINNNLNINNFEYILNSIQESKQRN IIKKYSTLDRYISFLLKNKLNKENYKYKRNILQVHLLAIGCELVKIIGDGNCLFRSISYN LFGKQIYHMYIRQACVDYMLKYKNEYSIYFEEGKFTKYIKNMLNDGYWGDELCIKAIADT FDCVVYIITSNPDKWLLKYEPKCKNNYQPKKCVFLAYSSPIHYDSLKLIKM

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PBANKA_082400      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India