PBANKA_0932000 | rhoptry neck protein 4

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:1990225      

  • Curated_GO_Components:  rhoptry neck      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:  entry into host      

No Results
No Results

  • Fasta :-

    >PBANKA_0932000 MSGLRLFYVCIFIVLSTFIHTAKSIQDNDDIWGFSFFNKDEKVEEGSNQNVQHADDAANT GHEQQNAVNISEHHPNNTEELKSHKEHDEGQSEQVSQQINNENERSNNNNNNNGNTPEHN PSNQTNNSDIQESNHNDANHQNITTEHAQTENVNNTEHIQTENVNNTEHAQTENVNNTEH IQTENVNNTEHAQTENGHSGGDEGEHSAEGDQSNINNNNKDHSDIYAHNSSSSDISQFSD TTSSSSSSSGYSNLRKPAFVNVSVPAFGNASAPAFGNTYRAHKGSSNTEFSFKDSLQSPS NILLYDYGHNLENYINGNHSDIMDKGMNSITDPYNYNLLKKKYIYLSLAERAIFEIMDVS KKGLSEINSMRNSETISKIYYDALKRLKINEHSLDSRLELISLETCDKILSEMFKILTEL SYDNYSQFYESMNINKSALSESFKDIKIKILKKIGVSYAKFPPIIKETNGSQCPVNNLII SITPRELSQRLAIMFSSWLSTDEYGSINDFENNIELNVLCSGASILMQQWKYYQNALGFE DNNDHAFLGLIDELLTIDKRYSKNEEHSKSLEQMKKSKVFNYCTKLMRTSGNISTIPFNH ENNKTPSSSIIGSLGNLVKAHISGYYAATAQRINSYFNYSNNKDQKKALYKVISVCTLLN LTDILFNCTDPQSTNSANLNILKLNVLNTKGKEILYRLYNLSYLLESENEAIKEVCNPKN ASVDKSLQKLLELLSSNSHNVLAHEMEKRALDTDYINEEINNISDFDHNEKDNGEDDVEK AIFDDL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_0932000.fa Sequence name : PBANKA_0932000 Sequence length : 786 VALUES OF COMPUTED PARAMETERS Coef20 : 4.697 CoefTot : 0.064 ChDiff : -42 ZoneTo : 26 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.006 2.147 0.361 0.746 MesoH : -0.637 0.141 -0.408 0.179 MuHd_075 : 15.909 11.972 2.998 3.490 MuHd_095 : 24.543 19.742 7.802 6.546 MuHd_100 : 20.526 15.222 6.958 5.175 MuHd_105 : 20.306 17.388 6.467 5.983 Hmax_075 : 16.800 19.017 3.067 7.560 Hmax_095 : 20.600 24.400 5.436 7.857 Hmax_100 : 19.900 20.900 5.080 7.580 Hmax_105 : 21.100 24.700 4.657 6.410 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7927 0.2073 DFMC : 0.8514 0.1486
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 786 PBANKA_0932000 MSGLRLFYVCIFIVLSTFIHTAKSIQDNDDIWGFSFFNKDEKVEEGSNQNVQHADDAANTGHEQQNAVNISEHHPNNTEE 80 LKSHKEHDEGQSEQVSQQINNENERSNNNNNNNGNTPEHNPSNQTNNSDIQESNHNDANHQNITTEHAQTENVNNTEHIQ 160 TENVNNTEHAQTENVNNTEHIQTENVNNTEHAQTENGHSGGDEGEHSAEGDQSNINNNNKDHSDIYAHNSSSSDISQFSD 240 TTSSSSSSSGYSNLRKPAFVNVSVPAFGNASAPAFGNTYRAHKGSSNTEFSFKDSLQSPSNILLYDYGHNLENYINGNHS 320 DIMDKGMNSITDPYNYNLLKKKYIYLSLAERAIFEIMDVSKKGLSEINSMRNSETISKIYYDALKRLKINEHSLDSRLEL 400 ISLETCDKILSEMFKILTELSYDNYSQFYESMNINKSALSESFKDIKIKILKKIGVSYAKFPPIIKETNGSQCPVNNLII 480 SITPRELSQRLAIMFSSWLSTDEYGSINDFENNIELNVLCSGASILMQQWKYYQNALGFEDNNDHAFLGLIDELLTIDKR 560 YSKNEEHSKSLEQMKKSKVFNYCTKLMRTSGNISTIPFNHENNKTPSSSIIGSLGNLVKAHISGYYAATAQRINSYFNYS 640 NNKDQKKALYKVISVCTLLNLTDILFNCTDPQSTNSANLNILKLNVLNTKGKEILYRLYNLSYLLESENEAIKEVCNPKN 720 ASVDKSLQKLLELLSSNSHNVLAHEMEKRALDTDYINEEINNISDFDHNEKDNGEDDVEKAIFDDL 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 .................................................................. 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_0932000 5 --MSGLR|LF 0.072 . PBANKA_0932000 23 TFIHTAK|SI 0.104 . PBANKA_0932000 39 GFSFFNK|DE 0.094 . PBANKA_0932000 42 FFNKDEK|VE 0.062 . PBANKA_0932000 82 NNTEELK|SH 0.070 . PBANKA_0932000 85 EELKSHK|EH 0.067 . PBANKA_0932000 105 INNENER|SN 0.123 . PBANKA_0932000 220 NINNNNK|DH 0.088 . PBANKA_0932000 255 SGYSNLR|KP 0.075 . PBANKA_0932000 256 GYSNLRK|PA 0.106 . PBANKA_0932000 280 AFGNTYR|AH 0.093 . PBANKA_0932000 283 NTYRAHK|GS 0.190 . PBANKA_0932000 293 NTEFSFK|DS 0.074 . PBANKA_0932000 325 HSDIMDK|GM 0.063 . PBANKA_0932000 340 YNYNLLK|KK 0.062 . PBANKA_0932000 341 NYNLLKK|KY 0.081 . PBANKA_0932000 342 YNLLKKK|YI 0.114 . PBANKA_0932000 351 YLSLAER|AI 0.118 . PBANKA_0932000 361 EIMDVSK|KG 0.063 . PBANKA_0932000 362 IMDVSKK|GL 0.130 . PBANKA_0932000 371 SEINSMR|NS 0.101 . PBANKA_0932000 378 NSETISK|IY 0.066 . PBANKA_0932000 385 IYYDALK|RL 0.063 . PBANKA_0932000 386 YYDALKR|LK 0.090 . PBANKA_0932000 388 DALKRLK|IN 0.066 . PBANKA_0932000 397 EHSLDSR|LE 0.084 . PBANKA_0932000 408 SLETCDK|IL 0.068 . PBANKA_0932000 415 ILSEMFK|IL 0.068 . PBANKA_0932000 436 ESMNINK|SA 0.075 . PBANKA_0932000 444 ALSESFK|DI 0.094 . PBANKA_0932000 447 ESFKDIK|IK 0.059 . PBANKA_0932000 449 FKDIKIK|IL 0.081 . PBANKA_0932000 452 IKIKILK|KI 0.071 . PBANKA_0932000 453 KIKILKK|IG 0.072 . PBANKA_0932000 460 IGVSYAK|FP 0.065 . PBANKA_0932000 466 KFPPIIK|ET 0.057 . PBANKA_0932000 485 IISITPR|EL 0.149 . PBANKA_0932000 490 PRELSQR|LA 0.093 . PBANKA_0932000 531 ILMQQWK|YY 0.086 . PBANKA_0932000 559 ELLTIDK|RY 0.062 . PBANKA_0932000 560 LLTIDKR|YS 0.181 . PBANKA_0932000 563 IDKRYSK|NE 0.107 . PBANKA_0932000 569 KNEEHSK|SL 0.105 . PBANKA_0932000 575 KSLEQMK|KS 0.061 . PBANKA_0932000 576 SLEQMKK|SK 0.129 . PBANKA_0932000 578 EQMKKSK|VF 0.066 . PBANKA_0932000 585 VFNYCTK|LM 0.068 . PBANKA_0932000 588 YCTKLMR|TS 0.088 . PBANKA_0932000 604 FNHENNK|TP 0.067 . PBANKA_0932000 619 SLGNLVK|AH 0.065 . PBANKA_0932000 632 YAATAQR|IN 0.082 . PBANKA_0932000 643 FNYSNNK|DQ 0.068 . PBANKA_0932000 646 SNNKDQK|KA 0.078 . PBANKA_0932000 647 NNKDQKK|AL 0.140 . PBANKA_0932000 651 QKKALYK|VI 0.067 . PBANKA_0932000 683 ANLNILK|LN 0.054 . PBANKA_0932000 690 LNVLNTK|GK 0.064 . PBANKA_0932000 692 VLNTKGK|EI 0.068 . PBANKA_0932000 697 GKEILYR|LY 0.085 . PBANKA_0932000 713 SENEAIK|EV 0.070 . PBANKA_0932000 719 KEVCNPK|NA 0.069 . PBANKA_0932000 725 KNASVDK|SL 0.108 . PBANKA_0932000 729 VDKSLQK|LL 0.058 . PBANKA_0932000 748 LAHEMEK|RA 0.059 . PBANKA_0932000 749 AHEMEKR|AL 0.191 . PBANKA_0932000 771 DFDHNEK|DN 0.067 . PBANKA_0932000 780 GEDDVEK|AI 0.071 . ____________________________^_________________

  • Fasta :-

    >PBANKA_0932000 ATGTCTGGCCTAAGGTTATTTTATGTATGCATTTTCATAGTGCTCTCTACATTTATTCAT ACCGCAAAATCAATCCAAGATAATGATGATATTTGGGGATTTTCCTTTTTTAACAAAGAT GAAAAAGTAGAAGAGGGTTCTAATCAAAATGTGCAGCACGCTGATGATGCTGCCAATACA GGGCATGAACAACAAAACGCAGTAAATATTTCTGAACACCATCCAAATAATACTGAAGAA TTAAAAAGCCATAAAGAACATGATGAAGGTCAATCTGAACAGGTTTCTCAACAAATAAAT AACGAAAACGAGCGTAGCAATAATAATAATAACAATAATGGCAATACTCCAGAACATAAT CCTTCGAACCAAACCAATAATTCAGACATCCAAGAATCAAATCATAATGATGCGAACCAT CAAAATATCACAACTGAACATGCACAAACTGAAAATGTAAACAACACTGAACATATACAA ACTGAAAATGTAAACAATACTGAGCATGCACAAACTGAAAATGTAAACAATACTGAACAT ATACAAACTGAAAATGTAAACAATACTGAACATGCACAAACTGAAAATGGACATAGTGGT GGAGATGAGGGTGAACACAGTGCAGAAGGGGACCAAAGCAACATAAACAATAATAATAAA GATCATAGTGATATATATGCACACAACAGTTCTAGTTCAGACATCAGTCAATTTAGTGAT ACGACAAGTTCAAGCTCATCTAGTTCAGGATATTCGAATTTAAGAAAACCTGCTTTTGTA AATGTTTCTGTACCCGCTTTTGGAAATGCTTCTGCACCCGCTTTTGGAAATACTTATAGA GCTCATAAAGGATCTTCTAATACAGAATTTTCATTTAAAGACTCGTTACAAAGTCCCTCA AATATTTTATTATATGATTATGGGCACAATCTTGAAAATTATATTAATGGAAATCATAGT GATATTATGGATAAAGGAATGAATAGCATTACCGATCCTTATAATTATAATTTATTAAAA AAGAAATATATATATTTATCATTAGCAGAAAGAGCAATATTCGAAATTATGGATGTTTCT AAAAAAGGATTGAGTGAAATTAATAGTATGCGAAATAGTGAAACTATTTCTAAAATATAT TATGATGCTTTAAAAAGATTAAAAATAAATGAACATTCTCTTGATTCAAGATTAGAGTTG ATTTCACTTGAAACATGTGATAAAATATTATCAGAAATGTTTAAAATATTAACTGAATTG TCTTATGATAATTATTCACAATTTTATGAATCTATGAATATTAATAAATCAGCATTAAGT GAATCGTTTAAAGACATCAAAATCAAAATATTAAAAAAAATAGGTGTTTCATATGCAAAA TTTCCACCAATTATTAAAGAGACAAACGGAAGTCAATGTCCAGTTAATAATTTGATTATA AGTATAACACCAAGAGAATTATCACAACGTCTTGCTATTATGTTTAGCAGTTGGCTATCT ACTGATGAATACGGTTCTATAAATGATTTTGAAAATAATATCGAACTAAATGTTTTATGT TCAGGTGCATCCATATTAATGCAACAATGGAAATATTATCAAAATGCTTTAGGGTTTGAA GATAATAATGATCATGCATTTTTAGGTTTAATCGATGAATTATTAACAATAGACAAAAGA TATAGTAAAAATGAAGAACATAGTAAATCTTTAGAACAAATGAAAAAATCAAAAGTATTT AATTATTGTACTAAACTTATGAGAACAAGTGGAAACATTTCAACAATACCATTTAATCAT GAAAACAATAAAACTCCAAGTTCATCCATTATTGGTTCATTAGGAAATTTAGTTAAGGCA CATATAAGTGGATATTATGCAGCTACTGCTCAAAGAATTAACTCTTATTTTAATTATTCT AACAATAAAGATCAAAAGAAAGCACTATACAAAGTCATATCAGTTTGTACTCTCTTAAAT TTAACAGATATTTTATTTAATTGCACAGATCCACAATCAACTAATTCAGCAAATTTGAAC ATTTTGAAGCTAAATGTATTAAATACTAAAGGAAAAGAAATTCTATATCGCCTTTATAAT TTAAGCTACTTATTAGAGAGCGAAAACGAAGCAATTAAAGAAGTGTGTAATCCTAAAAAT GCCTCAGTTGATAAATCGTTACAAAAATTGTTAGAATTACTTTCATCAAACTCACACAAC GTATTAGCACATGAAATGGAAAAGAGAGCTCTTGATACTGATTATATTAACGAGGAAATA AACAATATAAGTGATTTTGATCATAATGAAAAAGACAATGGAGAAGATGATGTTGAGAAA GCCATTTTTGATGATTTATGA
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_0932000199 SENGHSGGDE0.996unspPBANKA_0932000199 SENGHSGGDE0.996unspPBANKA_0932000199 SENGHSGGDE0.996unspPBANKA_0932000246 STSSSSSSSG0.992unspPBANKA_0932000247 SSSSSSSSGY0.991unspPBANKA_0932000291 SNTEFSFKDS0.997unspPBANKA_0932000442 SALSESFKDI0.997unspPBANKA_0932000506 SDEYGSINDF0.991unspPBANKA_0932000562 SDKRYSKNEE0.997unspPBANKA_093200024 SHTAKSIQDN0.996unspPBANKA_093200083 SEELKSHKEH0.998unsp

PBANKA_093200      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India