PBANKA_1001100 | ubiquitin specific protease, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1001100OTHER0.9999670.0000190.000014
No Results

  • Fasta :-

    >PBANKA_1001100 MNISYHNFIDLFNIKNYEYYEKYYNYEEAKRSHTAFINNGNICYCNASLQLILSIKPLCI YILKNFDKFYLKTQSKYKGDIIKTMYELIHETYNIGETKNNNVLCTNKQINLLKKINKYN LHLDIFSQNDAHEFMLLLLNYINIECNRYTDNEKNMEIILDENDGKELAGDKYWVKYLYK ENSIITDLLGFQNISTITCFNCDHTRYSFEFCLDLGLEFPDENIKSTTLIELLRNNINKS DDICSLDCNNCKLKKTSRIKKGIYRMPNLYMIIYIKRFKWVYYQSNNCYNNKVKKIDTIV LLPQDGIVDFTNFLQLSNHNSLYNAKYIIESIICHSGNSYNGHYTSIVKHYDGFYKCNDD KIYKLDTPYDPNNISDIYLLLLRRLS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1001100.fa Sequence name : PBANKA_1001100 Sequence length : 386 VALUES OF COMPUTED PARAMETERS Coef20 : 3.240 CoefTot : -0.552 ChDiff : 2 ZoneTo : 9 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.024 1.729 0.187 0.569 MesoH : -0.991 -0.024 -0.505 0.129 MuHd_075 : 13.132 11.544 5.815 3.620 MuHd_095 : 23.135 10.241 5.357 2.304 MuHd_100 : 15.961 9.613 3.435 1.663 MuHd_105 : 10.700 9.072 3.088 1.958 Hmax_075 : 0.600 8.500 -1.209 3.700 Hmax_095 : 9.000 6.400 -0.532 3.740 Hmax_100 : 4.700 5.300 -1.888 3.140 Hmax_105 : 0.600 5.200 -2.231 2.640 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9930 0.0070 DFMC : 0.9947 0.0053
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 386 PBANKA_1001100 MNISYHNFIDLFNIKNYEYYEKYYNYEEAKRSHTAFINNGNICYCNASLQLILSIKPLCIYILKNFDKFYLKTQSKYKGD 80 IIKTMYELIHETYNIGETKNNNVLCTNKQINLLKKINKYNLHLDIFSQNDAHEFMLLLLNYINIECNRYTDNEKNMEIIL 160 DENDGKELAGDKYWVKYLYKENSIITDLLGFQNISTITCFNCDHTRYSFEFCLDLGLEFPDENIKSTTLIELLRNNINKS 240 DDICSLDCNNCKLKKTSRIKKGIYRMPNLYMIIYIKRFKWVYYQSNNCYNNKVKKIDTIVLLPQDGIVDFTNFLQLSNHN 320 SLYNAKYIIESIICHSGNSYNGHYTSIVKHYDGFYKCNDDKIYKLDTPYDPNNISDIYLLLLRRLS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................................................................. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1001100 15 IDLFNIK|NY 0.065 . PBANKA_1001100 22 NYEYYEK|YY 0.064 . PBANKA_1001100 30 YNYEEAK|RS 0.069 . PBANKA_1001100 31 NYEEAKR|SH 0.190 . PBANKA_1001100 56 QLILSIK|PL 0.062 . PBANKA_1001100 64 LCIYILK|NF 0.057 . PBANKA_1001100 68 ILKNFDK|FY 0.070 . PBANKA_1001100 72 FDKFYLK|TQ 0.061 . PBANKA_1001100 76 YLKTQSK|YK 0.104 . PBANKA_1001100 78 KTQSKYK|GD 0.074 . PBANKA_1001100 83 YKGDIIK|TM 0.064 . PBANKA_1001100 99 YNIGETK|NN 0.062 . PBANKA_1001100 108 NVLCTNK|QI 0.057 . PBANKA_1001100 114 KQINLLK|KI 0.070 . PBANKA_1001100 115 QINLLKK|IN 0.103 . PBANKA_1001100 118 LLKKINK|YN 0.062 . PBANKA_1001100 148 INIECNR|YT 0.113 . PBANKA_1001100 154 RYTDNEK|NM 0.063 . PBANKA_1001100 166 LDENDGK|EL 0.062 . PBANKA_1001100 172 KELAGDK|YW 0.059 . PBANKA_1001100 176 GDKYWVK|YL 0.073 . PBANKA_1001100 180 WVKYLYK|EN 0.067 . PBANKA_1001100 206 FNCDHTR|YS 0.090 . PBANKA_1001100 225 FPDENIK|ST 0.070 . PBANKA_1001100 234 TLIELLR|NN 0.078 . PBANKA_1001100 239 LRNNINK|SD 0.101 . PBANKA_1001100 252 LDCNNCK|LK 0.060 . PBANKA_1001100 254 CNNCKLK|KT 0.084 . PBANKA_1001100 255 NNCKLKK|TS 0.093 . PBANKA_1001100 258 KLKKTSR|IK 0.099 . PBANKA_1001100 260 KKTSRIK|KG 0.058 . PBANKA_1001100 261 KTSRIKK|GI 0.456 . PBANKA_1001100 265 IKKGIYR|MP 0.080 . PBANKA_1001100 276 YMIIYIK|RF 0.058 . PBANKA_1001100 277 MIIYIKR|FK 0.179 . PBANKA_1001100 279 IYIKRFK|WV 0.075 . PBANKA_1001100 292 NNCYNNK|VK 0.057 . PBANKA_1001100 294 CYNNKVK|KI 0.079 . PBANKA_1001100 295 YNNKVKK|ID 0.136 . PBANKA_1001100 326 NSLYNAK|YI 0.076 . PBANKA_1001100 349 HYTSIVK|HY 0.058 . PBANKA_1001100 356 HYDGFYK|CN 0.068 . PBANKA_1001100 361 YKCNDDK|IY 0.057 . PBANKA_1001100 364 NDDKIYK|LD 0.057 . PBANKA_1001100 383 IYLLLLR|RL 0.071 . PBANKA_1001100 384 YLLLLRR|LS 0.087 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1001100 ATGAATATATCATATCACAACTTTATCGATCTATTTAACATAAAAAACTACGAGTATTAT GAAAAGTACTACAACTATGAAGAGGCCAAAAGAAGCCACACAGCATTTATCAATAATGGA AATATATGTTATTGCAATGCTTCACTACAACTAATTTTGTCAATTAAACCTCTTTGCATA TATATACTAAAAAATTTCGACAAATTTTACCTCAAGACTCAATCTAAATATAAAGGAGAT ATAATTAAAACAATGTATGAACTGATTCACGAAACTTATAATATTGGAGAAACAAAGAAC AATAATGTATTATGTACAAATAAACAAATAAATTTACTTAAAAAAATTAACAAATATAAT TTACATTTGGATATTTTTTCACAAAATGATGCTCATGAATTTATGCTACTATTACTAAAT TATATTAATATAGAGTGTAATAGATATACAGATAATGAAAAAAATATGGAAATAATATTG GACGAAAACGATGGCAAAGAATTGGCAGGAGATAAATATTGGGTAAAATATCTATATAAA GAAAATAGTATAATAACTGATTTGCTAGGCTTTCAAAATATTTCTACTATTACATGTTTT AATTGTGATCATACACGATACAGTTTTGAATTCTGCTTAGATTTGGGATTAGAATTTCCT GATGAAAATATAAAAAGTACTACACTTATAGAATTACTTAGAAACAACATAAATAAAAGT GATGATATTTGCTCATTAGATTGCAATAATTGTAAACTAAAAAAAACAAGCCGAATAAAA AAAGGGATATATAGAATGCCTAATTTATATATGATAATATATATAAAAAGATTTAAATGG GTATATTACCAAAGTAATAACTGCTATAATAATAAAGTTAAAAAAATAGATACAATTGTA TTACTACCCCAAGATGGTATCGTCGATTTTACAAATTTTTTACAACTCTCTAATCACAAT TCTTTATATAACGCTAAATATATTATTGAAAGTATTATATGTCATAGTGGAAATAGCTAT AATGGTCATTACACATCTATAGTTAAGCATTACGATGGATTTTACAAATGCAACGACGAT AAAATATATAAATTAGATACACCATATGATCCTAACAATATCAGTGACATATATTTGCTT TTGTTAAGGAGATTATCCTAG
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  • Fasta :-

    MNISYHNFIDLFNIKNYEYYEKYYNYEEAKRSHTAFINNGNICYCNASLQLILSIKPLCI YILKNFDKFYLKTQSKYKGDIIKTMYELIHETYNIGETKNNNVLCTNKQINLLKKINKYN LHLDIFSQNDAHEFMLLLLNYINIECNRYTDNEKNMEIILDENDGKELAGDKYWVKYLYK ENSIITDLLGFQNISTITCFNCDHTRYSFEFCLDLGLEFPDENIKSTTLIELLRNNINKS DDICSLDCNNCKLKKTSRIKKGIYRMPNLYMIIYIKRFKWVYYQSNNCYNNKVKKIDTIV LLPQDGIVDFTNFLQLSNHNSLYNAKYIIESIICHSGNSYNGHYTSIVKHYDGFYKCNDD KIYKLDTPYDPNNISDIYLLLLRRLS

    No Results
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PBANKA_100110      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India