PBANKA_1031300 | rhomboid protease ROM8

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1031300OTHER0.9999790.0000020.000019
No Results

  • Fasta :-

    >PBANKA_1031300 MEKGNSCSNAKIFLESEDKTEKINGSKEYDDDDNNLKKGICSNTSMYDNVNEHREVENQP SGENEINNIKNHHLLKIYNGEVMPSNEDNMLLSSNNTIILLKCVNNKGKVRNGSKNSSKS NYKKEKYKRSHTKKEKKFKVNSAGEDLLSDSRDYPSLKVNYKINKKNHYEKTKKMGFPQM AMNDKNERISSSICTDNAKFINFLKEHGKNAHYKNRKRYNNLRRQQKKNVQKKEGNLKTI NNYILDIHDRNMSSANMGSNNIHKSKTSLKYHTHDEQAEQAYLSELQIAESERSVKDKNR LKNYSNTIKEENKIIKQKDKIKALLSRTRRCFLFRKKTLRKRKEKIIIFLNHNYTPPENG KFNDHFYKTIHKDDLENLEEEKIYLHHNKGNTIKKIIYRIFPQFSIFSLILFVTFIQWVM FIILISVKSDFPLTPSNDSLKNFGSNFPYQIFKKAEVYRLFTALFLHSNFNHICANTYVQ LTVGFLLEYLYGTYVVFLVYVFTGIYGIILSSPLTYCYSTTESSSSSSGIIGIFFSEILM MTNFNVDTISISVHLFCFFLLLLFLKFSLNTISINIYSHFFGFIGGFLIGIILKRNQLKY FLKNNLLIQILSLIFLIVSLATAIFVSTSVMQDCPY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1031300.fa Sequence name : PBANKA_1031300 Sequence length : 636 VALUES OF COMPUTED PARAMETERS Coef20 : 3.433 CoefTot : 0.000 ChDiff : 34 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.506 2.853 0.523 0.979 MesoH : 1.283 1.509 0.128 0.594 MuHd_075 : 8.321 0.947 0.515 1.559 MuHd_095 : 21.120 4.238 4.114 2.842 MuHd_100 : 10.742 0.832 0.886 1.247 MuHd_105 : 10.573 7.959 4.001 1.349 Hmax_075 : -5.367 -0.350 -3.733 1.073 Hmax_095 : 2.450 0.175 -2.205 1.575 Hmax_100 : -4.300 2.700 -2.434 0.790 Hmax_105 : -5.833 4.083 -2.434 1.132 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9528 0.0472 DFMC : 0.9593 0.0407
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 636 PBANKA_1031300 MEKGNSCSNAKIFLESEDKTEKINGSKEYDDDDNNLKKGICSNTSMYDNVNEHREVENQPSGENEINNIKNHHLLKIYNG 80 EVMPSNEDNMLLSSNNTIILLKCVNNKGKVRNGSKNSSKSNYKKEKYKRSHTKKEKKFKVNSAGEDLLSDSRDYPSLKVN 160 YKINKKNHYEKTKKMGFPQMAMNDKNERISSSICTDNAKFINFLKEHGKNAHYKNRKRYNNLRRQQKKNVQKKEGNLKTI 240 NNYILDIHDRNMSSANMGSNNIHKSKTSLKYHTHDEQAEQAYLSELQIAESERSVKDKNRLKNYSNTIKEENKIIKQKDK 320 IKALLSRTRRCFLFRKKTLRKRKEKIIIFLNHNYTPPENGKFNDHFYKTIHKDDLENLEEEKIYLHHNKGNTIKKIIYRI 400 FPQFSIFSLILFVTFIQWVMFIILISVKSDFPLTPSNDSLKNFGSNFPYQIFKKAEVYRLFTALFLHSNFNHICANTYVQ 480 LTVGFLLEYLYGTYVVFLVYVFTGIYGIILSSPLTYCYSTTESSSSSSGIIGIFFSEILMMTNFNVDTISISVHLFCFFL 560 LLLFLKFSLNTISINIYSHFFGFIGGFLIGIILKRNQLKYFLKNNLLIQILSLIFLIVSLATAIFVSTSVMQDCPY 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ............................................................................ 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1031300 3 ----MEK|GN 0.066 . PBANKA_1031300 11 NSCSNAK|IF 0.065 . PBANKA_1031300 19 FLESEDK|TE 0.053 . PBANKA_1031300 22 SEDKTEK|IN 0.068 . PBANKA_1031300 27 EKINGSK|EY 0.062 . PBANKA_1031300 37 DDDNNLK|KG 0.055 . PBANKA_1031300 38 DDNNLKK|GI 0.130 . PBANKA_1031300 54 DNVNEHR|EV 0.149 . PBANKA_1031300 70 NEINNIK|NH 0.053 . PBANKA_1031300 76 KNHHLLK|IY 0.070 . PBANKA_1031300 102 NTIILLK|CV 0.071 . PBANKA_1031300 107 LKCVNNK|GK 0.064 . PBANKA_1031300 109 CVNNKGK|VR 0.068 . PBANKA_1031300 111 NNKGKVR|NG 0.085 . PBANKA_1031300 115 KVRNGSK|NS 0.062 . PBANKA_1031300 119 GSKNSSK|SN 0.118 . PBANKA_1031300 123 SSKSNYK|KE 0.060 . PBANKA_1031300 124 SKSNYKK|EK 0.144 . PBANKA_1031300 126 SNYKKEK|YK 0.080 . PBANKA_1031300 128 YKKEKYK|RS 0.074 . PBANKA_1031300 129 KKEKYKR|SH 0.474 . PBANKA_1031300 133 YKRSHTK|KE 0.070 . PBANKA_1031300 134 KRSHTKK|EK 0.183 . PBANKA_1031300 136 SHTKKEK|KF 0.062 . PBANKA_1031300 137 HTKKEKK|FK 0.106 . PBANKA_1031300 139 KKEKKFK|VN 0.108 . PBANKA_1031300 152 DLLSDSR|DY 0.067 . PBANKA_1031300 158 RDYPSLK|VN 0.062 . PBANKA_1031300 162 SLKVNYK|IN 0.064 . PBANKA_1031300 165 VNYKINK|KN 0.065 . PBANKA_1031300 166 NYKINKK|NH 0.075 . PBANKA_1031300 171 KKNHYEK|TK 0.095 . PBANKA_1031300 173 NHYEKTK|KM 0.074 . PBANKA_1031300 174 HYEKTKK|MG 0.110 . PBANKA_1031300 185 QMAMNDK|NE 0.060 . PBANKA_1031300 188 MNDKNER|IS 0.086 . PBANKA_1031300 199 ICTDNAK|FI 0.067 . PBANKA_1031300 205 KFINFLK|EH 0.065 . PBANKA_1031300 209 FLKEHGK|NA 0.072 . PBANKA_1031300 214 GKNAHYK|NR 0.076 . PBANKA_1031300 216 NAHYKNR|KR 0.102 . PBANKA_1031300 217 AHYKNRK|RY 0.079 . PBANKA_1031300 218 HYKNRKR|YN 0.165 . PBANKA_1031300 223 KRYNNLR|RQ 0.098 . PBANKA_1031300 224 RYNNLRR|QQ 0.147 . PBANKA_1031300 227 NLRRQQK|KN 0.136 . PBANKA_1031300 228 LRRQQKK|NV 0.325 . PBANKA_1031300 232 QKKNVQK|KE 0.069 . PBANKA_1031300 233 KKNVQKK|EG 0.113 . PBANKA_1031300 238 KKEGNLK|TI 0.065 . PBANKA_1031300 250 ILDIHDR|NM 0.103 . PBANKA_1031300 264 GSNNIHK|SK 0.087 . PBANKA_1031300 266 NNIHKSK|TS 0.069 . PBANKA_1031300 270 KSKTSLK|YH 0.074 . PBANKA_1031300 293 QIAESER|SV 0.248 . PBANKA_1031300 296 ESERSVK|DK 0.136 . PBANKA_1031300 298 ERSVKDK|NR 0.084 . PBANKA_1031300 300 SVKDKNR|LK 0.094 . PBANKA_1031300 302 KDKNRLK|NY 0.065 . PBANKA_1031300 309 NYSNTIK|EE 0.075 . PBANKA_1031300 313 TIKEENK|II 0.071 . PBANKA_1031300 316 EENKIIK|QK 0.075 . PBANKA_1031300 318 NKIIKQK|DK 0.097 . PBANKA_1031300 320 IIKQKDK|IK 0.060 . PBANKA_1031300 322 KQKDKIK|AL 0.063 . PBANKA_1031300 327 IKALLSR|TR 0.079 . PBANKA_1031300 329 ALLSRTR|RC 0.070 . PBANKA_1031300 330 LLSRTRR|CF 0.380 . PBANKA_1031300 335 RRCFLFR|KK 0.082 . PBANKA_1031300 336 RCFLFRK|KT 0.076 . PBANKA_1031300 337 CFLFRKK|TL 0.075 . PBANKA_1031300 340 FRKKTLR|KR 0.088 . PBANKA_1031300 341 RKKTLRK|RK 0.090 . PBANKA_1031300 342 KKTLRKR|KE 0.128 . PBANKA_1031300 343 KTLRKRK|EK 0.242 . PBANKA_1031300 345 LRKRKEK|II 0.173 . PBANKA_1031300 361 TPPENGK|FN 0.077 . PBANKA_1031300 368 FNDHFYK|TI 0.070 . PBANKA_1031300 372 FYKTIHK|DD 0.061 . PBANKA_1031300 382 ENLEEEK|IY 0.056 . PBANKA_1031300 389 IYLHHNK|GN 0.070 . PBANKA_1031300 394 NKGNTIK|KI 0.067 . PBANKA_1031300 395 KGNTIKK|II 0.181 . PBANKA_1031300 399 IKKIIYR|IF 0.081 . PBANKA_1031300 428 IILISVK|SD 0.074 . PBANKA_1031300 441 PSNDSLK|NF 0.076 . PBANKA_1031300 453 FPYQIFK|KA 0.074 . PBANKA_1031300 454 PYQIFKK|AE 0.096 . PBANKA_1031300 459 KKAEVYR|LF 0.120 . PBANKA_1031300 566 LLLLFLK|FS 0.056 . PBANKA_1031300 594 LIGIILK|RN 0.054 . PBANKA_1031300 595 IGIILKR|NQ 0.122 . PBANKA_1031300 599 LKRNQLK|YF 0.071 . PBANKA_1031300 603 QLKYFLK|NN 0.060 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1031300 ATGGAAAAAGGAAACTCATGTTCAAATGCTAAGATATTTTTAGAATCAGAAGATAAAACT GAAAAAATAAATGGCAGTAAAGAATATGACGATGATGATAATAACTTAAAAAAAGGCATT TGTTCAAATACAAGCATGTATGATAACGTGAATGAACATAGAGAAGTTGAGAATCAACCT AGTGGAGAAAATGAAATAAATAATATTAAAAACCATCATTTGTTGAAAATTTATAATGGC GAAGTGATGCCCTCAAATGAGGACAATATGCTATTAAGTAGTAATAATACAATAATTTTG TTAAAATGTGTAAATAATAAAGGTAAAGTTAGAAATGGTTCTAAAAATAGCTCCAAAAGT AACTATAAGAAAGAAAAATACAAAAGAAGTCATACAAAAAAAGAAAAAAAGTTTAAAGTA AATAGTGCCGGTGAAGACTTATTATCTGATTCTCGGGACTATCCTTCCTTAAAAGTAAAT TATAAAATTAATAAAAAAAATCATTATGAAAAAACAAAGAAAATGGGATTTCCCCAAATG GCAATGAATGATAAGAATGAACGAATTTCTAGTAGTATATGCACAGATAATGCAAAATTT ATAAATTTTTTAAAAGAGCATGGGAAAAATGCTCATTACAAAAATCGTAAAAGATATAAT AATTTACGGAGACAACAAAAAAAAAATGTTCAAAAAAAAGAAGGTAATTTAAAAACAATA AATAATTATATATTAGACATTCATGATAGAAATATGTCTAGTGCAAATATGGGATCAAAT AATATACATAAATCTAAAACATCTTTAAAATATCATACACATGATGAGCAAGCTGAACAA GCTTATTTAAGCGAATTACAAATTGCAGAAAGTGAACGAAGTGTAAAAGATAAAAATCGT TTAAAAAATTATTCAAACACAATTAAAGAAGAAAATAAAATTATAAAACAAAAAGATAAA ATCAAAGCATTATTGTCTCGAACTCGACGATGCTTTTTATTTCGGAAAAAAACATTAAGA AAAAGAAAAGAAAAAATTATAATATTTTTAAATCATAATTATACACCACCTGAAAATGGA AAATTTAATGATCATTTTTATAAAACTATACATAAGGACGATTTAGAAAATTTAGAAGAA GAAAAAATATATCTTCACCATAATAAAGGAAATACTATCAAAAAAATTATATATAGAATA TTTCCACAATTTTCTATATTTAGTTTAATCTTATTTGTTACATTTATCCAATGGGTAATG TTTATTATACTTATATCCGTAAAATCTGATTTTCCTTTAACACCATCAAATGATTCGTTA AAGAATTTTGGAAGCAATTTTCCCTATCAAATTTTTAAAAAGGCGGAAGTTTATCGCCTT TTTACAGCTTTGTTTTTGCATTCAAATTTCAATCATATTTGTGCCAATACATATGTTCAG TTAACTGTCGGATTCTTACTAGAATATTTGTATGGGACATATGTCGTTTTTTTAGTTTAC GTATTCACAGGCATATATGGAATAATATTATCATCGCCTTTAACATACTGTTACTCAACT ACAGAAAGTAGTAGTAGTTCATCGGGGATTATTGGAATATTTTTTTCAGAAATTTTAATG ATGACTAATTTTAATGTAGACACAATTAGTATTAGTGTTCATTTATTTTGTTTTTTTCTT CTTCTTTTATTTCTTAAATTCTCATTGAACACTATCAGTATTAATATTTATAGCCATTTT TTTGGTTTCATTGGAGGATTTTTGATAGGAATTATTTTAAAACGTAATCAATTGAAATAC TTTTTAAAGAACAATTTATTAATTCAAATATTATCCCTTATTTTTCTCATTGTAAGTTTA GCAACCGCTATTTTTGTTTCAACATCTGTCATGCAGGATTGTCCGTATTAG
  • Download Fasta

  • Fasta :-

    MEKGNSCSNAKIFLESEDKTEKINGSKEYDDDDNNLKKGICSNTSMYDNVNEHREVENQP SGENEINNIKNHHLLKIYNGEVMPSNEDNMLLSSNNTIILLKCVNNKGKVRNGSKNSSKS NYKKEKYKRSHTKKEKKFKVNSAGEDLLSDSRDYPSLKVNYKINKKNHYEKTKKMGFPQM AMNDKNERISSSICTDNAKFINFLKEHGKNAHYKNRKRYNNLRRQQKKNVQKKEGNLKTI NNYILDIHDRNMSSANMGSNNIHKSKTSLKYHTHDEQAEQAYLSELQIAESERSVKDKNR LKNYSNTIKEENKIIKQKDKIKALLSRTRRCFLFRKKTLRKRKEKIIIFLNHNYTPPENG KFNDHFYKTIHKDDLENLEEEKIYLHHNKGNTIKKIIYRIFPQFSIFSLILFVTFIQWVM FIILISVKSDFPLTPSNDSLKNFGSNFPYQIFKKAEVYRLFTALFLHSNFNHICANTYVQ LTVGFLLEYLYGTYVVFLVYVFTGIYGIILSSPLTYCYSTTESSSSSSGIIGIFFSEILM MTNFNVDTISISVHLFCFFLLLLFLKFSLNTISINIYSHFFGFIGGFLIGIILKRNQLKY FLKNNLLIQILSLIFLIVSLATAIFVSTSVMQDCPY

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_1031300294 SESERSVKDK0.997unspPBANKA_1031300294 SESERSVKDK0.997unspPBANKA_1031300294 SESERSVKDK0.997unspPBANKA_1031300439 SPSNDSLKNF0.991unspPBANKA_103130045 SCSNTSMYDN0.997unspPBANKA_103130085 SEVMPSNEDN0.993unsp

PBANKA_103130      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India