PBANKA_1106500 | rhomboid protease ROM4

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1106500OTHER0.9999670.0000180.000016
No Results

  • Fasta :-

    >PBANKA_1106500 METNKPKKAIINSKNNESLCESVEDTAKRGVKSPPWINKGNQIKKANIVGDSKNSKDALK KEVPENPNIIEKGIGVIQKKMPTNTSKNSTKNGTINDIKNDIKNNNVNNTGYGKELKMDK GRLDEIRILVNNESELHTLPSGAVGRRAPLNPFSSPILGKYRRKNVNAKKKVKDPRLNNN PLVGRLVVCISTTAILFWVFFSEMIFNYNTFNGRCISKVLYPIYTEAVESNREPFFVFLG YGACEYNLEESALDRHFIGTQTSDNGWPKNKVEDNPDGRGYATWDSVNNRVYNQLGGLNT NYIRNYGEIYRLFWSMYLHGGLMHIVFNVICQIQILWMIEPDWGFLRTLFLFFISGITGN LLSAVCDPCGVTIGSSGSLYGLIGALFAYYVEYWKTIPRPCCVIIFMILVVIFGIFIGMF GYTDNYAHIGGCLGGILYGFATITTVSSADKCTLGERMLTSPPFSWFLSNKTKQLIEEKA REKKIKGENYRKKQIANKVHKTDALHTIMSIMKNRINDEGRPSCKMKPREWIVRITSASI LIILWIILFIYLLDESAYRSYTPMGQIKFSGVHSCFCCDIVKKIPLTKNGKLYWCFSNQE AFDYYCKE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1106500.fa Sequence name : PBANKA_1106500 Sequence length : 608 VALUES OF COMPUTED PARAMETERS Coef20 : 3.520 CoefTot : -1.221 ChDiff : 25 ZoneTo : 16 KR : 4 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.953 3.429 0.812 1.102 MesoH : 1.188 1.422 0.209 0.592 MuHd_075 : 17.383 13.551 5.169 4.171 MuHd_095 : 8.057 7.247 3.932 2.442 MuHd_100 : 8.040 6.752 4.094 2.316 MuHd_105 : 12.657 7.217 5.145 2.618 Hmax_075 : -4.900 2.217 -3.916 1.493 Hmax_095 : -12.775 -3.800 -5.855 -0.332 Hmax_100 : -10.100 -3.800 -4.299 0.430 Hmax_105 : -6.700 -3.800 -3.845 0.390 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9966 0.0034 DFMC : 0.9976 0.0024
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 608 PBANKA_1106500 METNKPKKAIINSKNNESLCESVEDTAKRGVKSPPWINKGNQIKKANIVGDSKNSKDALKKEVPENPNIIEKGIGVIQKK 80 MPTNTSKNSTKNGTINDIKNDIKNNNVNNTGYGKELKMDKGRLDEIRILVNNESELHTLPSGAVGRRAPLNPFSSPILGK 160 YRRKNVNAKKKVKDPRLNNNPLVGRLVVCISTTAILFWVFFSEMIFNYNTFNGRCISKVLYPIYTEAVESNREPFFVFLG 240 YGACEYNLEESALDRHFIGTQTSDNGWPKNKVEDNPDGRGYATWDSVNNRVYNQLGGLNTNYIRNYGEIYRLFWSMYLHG 320 GLMHIVFNVICQIQILWMIEPDWGFLRTLFLFFISGITGNLLSAVCDPCGVTIGSSGSLYGLIGALFAYYVEYWKTIPRP 400 CCVIIFMILVVIFGIFIGMFGYTDNYAHIGGCLGGILYGFATITTVSSADKCTLGERMLTSPPFSWFLSNKTKQLIEEKA 480 REKKIKGENYRKKQIANKVHKTDALHTIMSIMKNRINDEGRPSCKMKPREWIVRITSASILIILWIILFIYLLDESAYRS 560 YTPMGQIKFSGVHSCFCCDIVKKIPLTKNGKLYWCFSNQEAFDYYCKE 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................ 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1106500 5 --METNK|PK 0.066 . PBANKA_1106500 7 METNKPK|KA 0.069 . PBANKA_1106500 8 ETNKPKK|AI 0.134 . PBANKA_1106500 14 KAIINSK|NN 0.067 . PBANKA_1106500 28 SVEDTAK|RG 0.060 . PBANKA_1106500 29 VEDTAKR|GV 0.203 . PBANKA_1106500 32 TAKRGVK|SP 0.181 . PBANKA_1106500 39 SPPWINK|GN 0.073 . PBANKA_1106500 44 NKGNQIK|KA 0.089 . PBANKA_1106500 45 KGNQIKK|AN 0.108 . PBANKA_1106500 53 NIVGDSK|NS 0.060 . PBANKA_1106500 56 GDSKNSK|DA 0.108 . PBANKA_1106500 60 NSKDALK|KE 0.060 . PBANKA_1106500 61 SKDALKK|EV 0.124 . PBANKA_1106500 72 NPNIIEK|GI 0.101 . PBANKA_1106500 79 GIGVIQK|KM 0.061 . PBANKA_1106500 80 IGVIQKK|MP 0.084 . PBANKA_1106500 87 MPTNTSK|NS 0.069 . PBANKA_1106500 91 TSKNSTK|NG 0.065 . PBANKA_1106500 99 GTINDIK|ND 0.059 . PBANKA_1106500 103 DIKNDIK|NN 0.062 . PBANKA_1106500 114 NNTGYGK|EL 0.057 . PBANKA_1106500 117 GYGKELK|MD 0.063 . PBANKA_1106500 120 KELKMDK|GR 0.061 . PBANKA_1106500 122 LKMDKGR|LD 0.095 . PBANKA_1106500 127 GRLDEIR|IL 0.102 . PBANKA_1106500 146 PSGAVGR|RA 0.094 . PBANKA_1106500 147 SGAVGRR|AP 0.115 . PBANKA_1106500 160 SSPILGK|YR 0.072 . PBANKA_1106500 162 PILGKYR|RK 0.070 . PBANKA_1106500 163 ILGKYRR|KN 0.117 . PBANKA_1106500 164 LGKYRRK|NV 0.114 . PBANKA_1106500 169 RKNVNAK|KK 0.069 . PBANKA_1106500 170 KNVNAKK|KV 0.125 . PBANKA_1106500 171 NVNAKKK|VK 0.128 . PBANKA_1106500 173 NAKKKVK|DP 0.068 . PBANKA_1106500 176 KKVKDPR|LN 0.098 . PBANKA_1106500 185 NNPLVGR|LV 0.092 . PBANKA_1106500 214 YNTFNGR|CI 0.110 . PBANKA_1106500 218 NGRCISK|VL 0.066 . PBANKA_1106500 232 EAVESNR|EP 0.076 . PBANKA_1106500 255 EESALDR|HF 0.104 . PBANKA_1106500 269 SDNGWPK|NK 0.067 . PBANKA_1106500 271 NGWPKNK|VE 0.057 . PBANKA_1106500 279 EDNPDGR|GY 0.087 . PBANKA_1106500 290 WDSVNNR|VY 0.108 . PBANKA_1106500 304 LNTNYIR|NY 0.094 . PBANKA_1106500 311 NYGEIYR|LF 0.072 . PBANKA_1106500 347 PDWGFLR|TL 0.078 . PBANKA_1106500 395 YYVEYWK|TI 0.054 . PBANKA_1106500 399 YWKTIPR|PC 0.099 . PBANKA_1106500 451 TVSSADK|CT 0.073 . PBANKA_1106500 457 KCTLGER|ML 0.070 . PBANKA_1106500 471 SWFLSNK|TK 0.065 . PBANKA_1106500 473 FLSNKTK|QL 0.084 . PBANKA_1106500 479 KQLIEEK|AR 0.066 . PBANKA_1106500 481 LIEEKAR|EK 0.096 . PBANKA_1106500 483 EEKAREK|KI 0.059 . PBANKA_1106500 484 EKAREKK|IK 0.411 . PBANKA_1106500 486 AREKKIK|GE 0.090 . PBANKA_1106500 491 IKGENYR|KK 0.095 . PBANKA_1106500 492 KGENYRK|KQ 0.071 . PBANKA_1106500 493 GENYRKK|QI 0.172 . PBANKA_1106500 498 KKQIANK|VH 0.058 . PBANKA_1106500 501 IANKVHK|TD 0.066 . PBANKA_1106500 513 TIMSIMK|NR 0.060 . PBANKA_1106500 515 MSIMKNR|IN 0.166 . PBANKA_1106500 521 RINDEGR|PS 0.115 . PBANKA_1106500 525 EGRPSCK|MK 0.061 . PBANKA_1106500 527 RPSCKMK|PR 0.120 . PBANKA_1106500 529 SCKMKPR|EW 0.126 . PBANKA_1106500 534 PREWIVR|IT 0.126 . PBANKA_1106500 559 LDESAYR|SY 0.118 . PBANKA_1106500 568 TPMGQIK|FS 0.084 . PBANKA_1106500 582 FCCDIVK|KI 0.055 . PBANKA_1106500 583 CCDIVKK|IP 0.076 . PBANKA_1106500 588 KKIPLTK|NG 0.057 . PBANKA_1106500 591 PLTKNGK|LY 0.056 . PBANKA_1106500 607 AFDYYCK|E- 0.057 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1106500 ATGGAAACAAATAAACCGAAAAAGGCTATAATTAATAGTAAAAATAATGAATCTTTGTGT GAATCAGTAGAAGATACAGCCAAAAGGGGTGTCAAATCACCTCCATGGATAAACAAAGGA AATCAAATAAAAAAAGCTAATATAGTTGGCGATTCTAAAAATAGTAAAGATGCTTTGAAA AAGGAAGTTCCAGAAAATCCAAATATTATTGAAAAAGGGATTGGGGTGATTCAAAAAAAA ATGCCCACTAATACGAGTAAAAATAGCACGAAAAACGGTACGATAAATGATATTAAAAAT GATATTAAAAATAACAATGTTAATAATACTGGATATGGAAAAGAATTGAAAATGGACAAA GGTCGATTAGATGAAATAAGAATATTAGTTAATAACGAAAGTGAATTGCATACATTGCCA TCTGGAGCTGTTGGTAGGAGAGCTCCCTTGAATCCGTTTTCTTCACCTATACTTGGGAAA TATAGAAGGAAAAATGTAAATGCAAAAAAAAAAGTAAAAGATCCGAGATTAAATAATAAT CCATTAGTTGGGAGATTAGTAGTATGTATATCAACTACAGCAATTTTATTTTGGGTATTT TTTTCCGAAATGATATTTAATTATAATACATTTAATGGTAGATGTATATCTAAAGTTTTA TACCCAATATATACAGAAGCTGTAGAATCAAATAGAGAGCCATTTTTTGTATTTTTAGGA TATGGCGCATGTGAATATAATTTAGAAGAATCAGCTTTAGATAGGCATTTTATAGGAACA CAAACATCTGATAATGGATGGCCAAAAAATAAAGTAGAAGATAATCCAGATGGTCGAGGA TATGCTACATGGGATTCAGTAAATAATCGTGTATATAATCAATTAGGAGGATTAAATACA AATTACATTAGAAATTATGGAGAAATATATCGTTTATTTTGGTCTATGTATTTACATGGT GGTTTAATGCATATAGTATTTAATGTTATATGCCAAATTCAAATATTATGGATGATTGAA CCAGATTGGGGATTTTTAAGAACACTATTCTTATTTTTTATATCTGGAATAACAGGAAAT TTATTATCAGCTGTTTGTGACCCATGTGGTGTTACGATTGGATCATCAGGTTCTTTATAT GGATTAATAGGAGCATTATTTGCTTATTATGTAGAATATTGGAAAACTATACCTAGACCA TGTTGTGTGATTATATTTATGATATTAGTTGTTATATTTGGTATTTTTATTGGTATGTTT GGGTATACAGATAATTATGCACATATTGGTGGGTGCTTAGGAGGGATCCTTTATGGTTTT GCTACAATAACTACAGTATCATCAGCTGACAAATGCACATTAGGAGAACGGATGTTAACA TCTCCACCCTTTTCATGGTTTTTATCGAATAAAACAAAACAATTAATTGAAGAAAAGGCT CGAGAAAAAAAAATAAAAGGTGAAAATTATCGAAAAAAACAAATAGCTAATAAAGTACAT AAAACAGATGCATTACATACTATTATGTCTATTATGAAGAACAGAATAAATGATGAAGGA AGGCCATCATGTAAAATGAAACCAAGAGAGTGGATTGTACGTATCACATCTGCGTCCATT TTAATTATATTATGGATCATCTTATTTATATACTTACTAGATGAAAGTGCTTATCGATCT TATACACCAATGGGGCAAATTAAATTTAGTGGAGTTCATTCTTGTTTTTGTTGTGATATT GTTAAAAAAATTCCTTTAACAAAAAATGGAAAATTATATTGGTGTTTTAGCAATCAAGAA GCATTTGATTATTATTGCAAGGAATAA
  • Download Fasta

  • Fasta :-

    METNKPKKAIINSKNNESLCESVEDTAKRGVKSPPWINKGNQIKKANIVGDSKNSKDALK KEVPENPNIIEKGIGVIQKKMPTNTSKNSTKNGTINDIKNDIKNNNVNNTGYGKELKMDK GRLDEIRILVNNESELHTLPSGAVGRRAPLNPFSSPILGKYRRKNVNAKKKVKDPRLNNN PLVGRLVVCISTTAILFWVFFSEMIFNYNTFNGRCISKVLYPIYTEAVESNREPFFVFLG YGACEYNLEESALDRHFIGTQTSDNGWPKNKVEDNPDGRGYATWDSVNNRVYNQLGGLNT NYIRNYGEIYRLFWSMYLHGGLMHIVFNVICQIQILWMIEPDWGFLRTLFLFFISGITGN LLSAVCDPCGVTIGSSGSLYGLIGALFAYYVEYWKTIPRPCCVIIFMILVVIFGIFIGMF GYTDNYAHIGGCLGGILYGFATITTVSSADKCTLGERMLTSPPFSWFLSNKTKQLIEEKA REKKIKGENYRKKQIANKVHKTDALHTIMSIMKNRINDEGRPSCKMKPREWIVRITSASI LIILWIILFIYLLDESAYRSYTPMGQIKFSGVHSCFCCDIVKKIPLTKNGKLYWCFSNQE AFDYYCKE

    No Results
    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_1106500230 SEAVESNREP0.994unspPBANKA_1106500230 SEAVESNREP0.994unspPBANKA_1106500230 SEAVESNREP0.994unspPBANKA_1106500523 SEGRPSCKMK0.996unspPBANKA_110650022 SSLCESVEDT0.997unspPBANKA_110650089 STSKNSTKNG0.993unsp

PBANKA_110650      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India