PBANKA_1106900 | PIMMS2 protein

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1106900OTHER0.9216200.0748490.003531
No Results

  • Fasta :-

    >PBANKA_1106900 MVLLNGKLKYIAVVAIFYNLIILLVKEKFPYICTKKKFHAISNRILYEYLNNFVSKDIFR REDITLKNLNFVQTNLKSDKDAEIKENRDTQSVDDNMFQRVYKFILNFFYGNKKNRINKS MNYGKYDNFNKINDIFEFMRNNGLPINITSVCLIDTGLNIKDALINYFLNHDISTYNSYT YHSVNINYKKPDSFNFGINSENCDEDNYSECESTFLENHNGHGKYEDKSTIQGDSLKLIE KKYDKNVDLQRSGIDVEICKAFNNSKEKKNSLNIIPVIKCLEYCKTKNVKIIHMDYNINE QNEQLIQIMDDLKNSEIFVILPSEKLFNEKPYEDNSVIYPSSFFEKFENVFFIGSLDYSD MSSDDADIASNFQIQKNEYLKYRKNNVFLLDSINSSLKKRDDHDILYYEIKYSSAFFINI ITIILNIYPNMSIKELRNILSYSIPSKETAQLKTENIFEGNFDINKFIHILLNRGINSSG FVRKYKDVTPNESTNKIFLLEDQKDADIEPQKDSSIDIYCDEGGSDEDIVSTSNGLDVYS EYSHSNNKSDQLLNDEKGLKYETYKDLYSVKENDIYVFESNNPTNSSFMQMNYDDKIKSK YLDNLEEANYQNHRTQFEINRNDNRYPIISEDNLRDRQNMHNIQMLNDGINYSENANNIE ELYDNDFEDYRGKDLNPEYNKIRDNNNNKNINKEFGILNTWRKNNEGLYLSDSEEESQPF KWMDMHVDDIYQDRKKRLKGNNYDNRNGRVRRIYEDNKRGRYIKNRNMQKKKNFDRNLKN KRYLNRRTKRHINEKNKRIMREKKNKYNNSVLKRNEMKSHNNSQKTPKIIPRKYSR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1106900.fa Sequence name : PBANKA_1106900 Sequence length : 836 VALUES OF COMPUTED PARAMETERS Coef20 : 4.169 CoefTot : -1.272 ChDiff : 3 ZoneTo : 47 KR : 8 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.312 2.259 0.184 0.758 MesoH : -0.803 0.268 -0.485 0.206 MuHd_075 : 32.180 18.892 8.695 5.838 MuHd_095 : 31.482 22.985 10.537 5.980 MuHd_100 : 21.298 16.527 6.808 4.752 MuHd_105 : 26.082 15.972 8.548 5.827 Hmax_075 : 13.000 18.700 4.803 4.440 Hmax_095 : 10.800 21.438 1.330 4.150 Hmax_100 : 10.800 21.700 1.330 7.280 Hmax_105 : 17.200 23.217 4.236 7.560 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7205 0.2795 DFMC : 0.8535 0.1465
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 836 PBANKA_1106900 MVLLNGKLKYIAVVAIFYNLIILLVKEKFPYICTKKKFHAISNRILYEYLNNFVSKDIFRREDITLKNLNFVQTNLKSDK 80 DAEIKENRDTQSVDDNMFQRVYKFILNFFYGNKKNRINKSMNYGKYDNFNKINDIFEFMRNNGLPINITSVCLIDTGLNI 160 KDALINYFLNHDISTYNSYTYHSVNINYKKPDSFNFGINSENCDEDNYSECESTFLENHNGHGKYEDKSTIQGDSLKLIE 240 KKYDKNVDLQRSGIDVEICKAFNNSKEKKNSLNIIPVIKCLEYCKTKNVKIIHMDYNINEQNEQLIQIMDDLKNSEIFVI 320 LPSEKLFNEKPYEDNSVIYPSSFFEKFENVFFIGSLDYSDMSSDDADIASNFQIQKNEYLKYRKNNVFLLDSINSSLKKR 400 DDHDILYYEIKYSSAFFINIITIILNIYPNMSIKELRNILSYSIPSKETAQLKTENIFEGNFDINKFIHILLNRGINSSG 480 FVRKYKDVTPNESTNKIFLLEDQKDADIEPQKDSSIDIYCDEGGSDEDIVSTSNGLDVYSEYSHSNNKSDQLLNDEKGLK 560 YETYKDLYSVKENDIYVFESNNPTNSSFMQMNYDDKIKSKYLDNLEEANYQNHRTQFEINRNDNRYPIISEDNLRDRQNM 640 HNIQMLNDGINYSENANNIEELYDNDFEDYRGKDLNPEYNKIRDNNNNKNINKEFGILNTWRKNNEGLYLSDSEEESQPF 720 KWMDMHVDDIYQDRKKRLKGNNYDNRNGRVRRIYEDNKRGRYIKNRNMQKKKNFDRNLKNKRYLNRRTKRHINEKNKRIM 800 REKKNKYNNSVLKRNEMKSHNNSQKTPKIIPRKYSR 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ...............................................................................P 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................P..............P.....................................P.......... 800 .................................... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 4 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1106900 7 MVLLNGK|LK 0.056 . PBANKA_1106900 9 LLNGKLK|YI 0.075 . PBANKA_1106900 26 LIILLVK|EK 0.062 . PBANKA_1106900 28 ILLVKEK|FP 0.062 . PBANKA_1106900 35 FPYICTK|KK 0.074 . PBANKA_1106900 36 PYICTKK|KF 0.093 . PBANKA_1106900 37 YICTKKK|FH 0.112 . PBANKA_1106900 44 FHAISNR|IL 0.112 . PBANKA_1106900 56 LNNFVSK|DI 0.120 . PBANKA_1106900 60 VSKDIFR|RE 0.083 . PBANKA_1106900 61 SKDIFRR|ED 0.125 . PBANKA_1106900 67 REDITLK|NL 0.060 . PBANKA_1106900 77 FVQTNLK|SD 0.071 . PBANKA_1106900 80 TNLKSDK|DA 0.118 . PBANKA_1106900 85 DKDAEIK|EN 0.062 . PBANKA_1106900 88 AEIKENR|DT 0.115 . PBANKA_1106900 100 DDNMFQR|VY 0.099 . PBANKA_1106900 103 MFQRVYK|FI 0.166 . PBANKA_1106900 113 NFFYGNK|KN 0.059 . PBANKA_1106900 114 FFYGNKK|NR 0.069 . PBANKA_1106900 116 YGNKKNR|IN 0.100 . PBANKA_1106900 119 KKNRINK|SM 0.254 . PBANKA_1106900 125 KSMNYGK|YD 0.064 . PBANKA_1106900 131 KYDNFNK|IN 0.069 . PBANKA_1106900 140 DIFEFMR|NN 0.086 . PBANKA_1106900 161 DTGLNIK|DA 0.061 . PBANKA_1106900 189 SVNINYK|KP 0.065 . PBANKA_1106900 190 VNINYKK|PD 0.101 . PBANKA_1106900 224 NHNGHGK|YE 0.081 . PBANKA_1106900 228 HGKYEDK|ST 0.097 . PBANKA_1106900 237 IQGDSLK|LI 0.069 . PBANKA_1106900 241 SLKLIEK|KY 0.062 . PBANKA_1106900 242 LKLIEKK|YD 0.097 . PBANKA_1106900 245 IEKKYDK|NV 0.081 . PBANKA_1106900 251 KNVDLQR|SG 0.157 . PBANKA_1106900 260 IDVEICK|AF 0.059 . PBANKA_1106900 266 KAFNNSK|EK 0.062 . PBANKA_1106900 268 FNNSKEK|KN 0.068 . PBANKA_1106900 269 NNSKEKK|NS 0.146 . PBANKA_1106900 279 NIIPVIK|CL 0.064 . PBANKA_1106900 285 KCLEYCK|TK 0.060 . PBANKA_1106900 287 LEYCKTK|NV 0.081 . PBANKA_1106900 290 CKTKNVK|II 0.064 . PBANKA_1106900 313 QIMDDLK|NS 0.057 . PBANKA_1106900 325 VILPSEK|LF 0.055 . PBANKA_1106900 330 EKLFNEK|PY 0.063 . PBANKA_1106900 346 PSSFFEK|FE 0.080 . PBANKA_1106900 376 SNFQIQK|NE 0.056 . PBANKA_1106900 381 QKNEYLK|YR 0.063 . PBANKA_1106900 383 NEYLKYR|KN 0.095 . PBANKA_1106900 384 EYLKYRK|NN 0.064 . PBANKA_1106900 398 SINSSLK|KR 0.062 . PBANKA_1106900 399 INSSLKK|RD 0.103 . PBANKA_1106900 400 NSSLKKR|DD 0.520 *ProP* PBANKA_1106900 411 ILYYEIK|YS 0.080 . PBANKA_1106900 434 YPNMSIK|EL 0.079 . PBANKA_1106900 437 MSIKELR|NI 0.081 . PBANKA_1106900 447 SYSIPSK|ET 0.071 . PBANKA_1106900 453 KETAQLK|TE 0.063 . PBANKA_1106900 466 GNFDINK|FI 0.072 . PBANKA_1106900 474 IHILLNR|GI 0.096 . PBANKA_1106900 483 NSSGFVR|KY 0.121 . PBANKA_1106900 484 SSGFVRK|YK 0.129 . PBANKA_1106900 486 GFVRKYK|DV 0.459 . PBANKA_1106900 496 PNESTNK|IF 0.053 . PBANKA_1106900 504 FLLEDQK|DA 0.066 . PBANKA_1106900 512 ADIEPQK|DS 0.070 . PBANKA_1106900 548 YSHSNNK|SD 0.067 . PBANKA_1106900 557 QLLNDEK|GL 0.057 . PBANKA_1106900 560 NDEKGLK|YE 0.056 . PBANKA_1106900 565 LKYETYK|DL 0.078 . PBANKA_1106900 571 KDLYSVK|EN 0.067 . PBANKA_1106900 596 QMNYDDK|IK 0.076 . PBANKA_1106900 598 NYDDKIK|SK 0.067 . PBANKA_1106900 600 DDKIKSK|YL 0.083 . PBANKA_1106900 614 ANYQNHR|TQ 0.085 . PBANKA_1106900 621 TQFEINR|ND 0.082 . PBANKA_1106900 625 INRNDNR|YP 0.113 . PBANKA_1106900 635 ISEDNLR|DR 0.084 . PBANKA_1106900 637 EDNLRDR|QN 0.107 . PBANKA_1106900 671 NDFEDYR|GK 0.077 . PBANKA_1106900 673 FEDYRGK|DL 0.073 . PBANKA_1106900 681 LNPEYNK|IR 0.055 . PBANKA_1106900 683 PEYNKIR|DN 0.104 . PBANKA_1106900 689 RDNNNNK|NI 0.075 . PBANKA_1106900 693 NNKNINK|EF 0.071 . PBANKA_1106900 702 GILNTWR|KN 0.096 . PBANKA_1106900 703 ILNTWRK|NN 0.088 . PBANKA_1106900 721 EESQPFK|WM 0.078 . PBANKA_1106900 734 DDIYQDR|KK 0.083 . PBANKA_1106900 735 DIYQDRK|KR 0.066 . PBANKA_1106900 736 IYQDRKK|RL 0.083 . PBANKA_1106900 737 YQDRKKR|LK 0.561 *ProP* PBANKA_1106900 739 DRKKRLK|GN 0.069 . PBANKA_1106900 746 GNNYDNR|NG 0.086 . PBANKA_1106900 749 YDNRNGR|VR 0.259 . PBANKA_1106900 751 NRNGRVR|RI 0.101 . PBANKA_1106900 752 RNGRVRR|IY 0.652 *ProP* PBANKA_1106900 758 RIYEDNK|RG 0.055 . PBANKA_1106900 759 IYEDNKR|GR 0.133 . PBANKA_1106900 761 EDNKRGR|YI 0.127 . PBANKA_1106900 764 KRGRYIK|NR 0.125 . PBANKA_1106900 766 GRYIKNR|NM 0.114 . PBANKA_1106900 770 KNRNMQK|KK 0.060 . PBANKA_1106900 771 NRNMQKK|KN 0.139 . PBANKA_1106900 772 RNMQKKK|NF 0.164 . PBANKA_1106900 776 KKKNFDR|NL 0.096 . PBANKA_1106900 779 NFDRNLK|NK 0.079 . PBANKA_1106900 781 DRNLKNK|RY 0.065 . PBANKA_1106900 782 RNLKNKR|YL 0.162 . PBANKA_1106900 786 NKRYLNR|RT 0.100 . PBANKA_1106900 787 KRYLNRR|TK 0.131 . PBANKA_1106900 789 YLNRRTK|RH 0.100 . PBANKA_1106900 790 LNRRTKR|HI 0.722 *ProP* PBANKA_1106900 795 KRHINEK|NK 0.071 . PBANKA_1106900 797 HINEKNK|RI 0.071 . PBANKA_1106900 798 INEKNKR|IM 0.162 . PBANKA_1106900 801 KNKRIMR|EK 0.235 . PBANKA_1106900 803 KRIMREK|KN 0.065 . PBANKA_1106900 804 RIMREKK|NK 0.249 . PBANKA_1106900 806 MREKKNK|YN 0.093 . PBANKA_1106900 813 YNNSVLK|RN 0.069 . PBANKA_1106900 814 NNSVLKR|NE 0.275 . PBANKA_1106900 818 LKRNEMK|SH 0.103 . PBANKA_1106900 825 SHNNSQK|TP 0.071 . PBANKA_1106900 828 NSQKTPK|II 0.073 . PBANKA_1106900 832 TPKIIPR|KY 0.132 . PBANKA_1106900 833 PKIIPRK|YS 0.094 . PBANKA_1106900 836 IPRKYSR|-- 0.114 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1106900 ATGGTCCTTTTAAATGGAAAACTAAAATATATCGCGGTTGTAGCGATATTTTATAATCTT ATTATTTTATTAGTTAAGGAAAAGTTTCCTTATATATGCACCAAAAAAAAATTCCATGCT ATTAGTAATAGAATTCTTTATGAATATTTGAATAATTTTGTATCCAAAGATATTTTTAGA CGCGAAGATATAACTCTTAAGAATCTCAACTTTGTTCAAACAAACTTGAAAAGTGATAAG GATGCTGAAATTAAAGAAAATAGAGATACACAAAGCGTTGATGATAATATGTTTCAAAGG GTGTATAAATTTATTTTGAATTTTTTTTATGGAAATAAGAAAAATCGTATAAACAAATCC ATGAACTATGGAAAATATGACAATTTTAATAAAATAAATGATATTTTTGAATTTATGAGA AACAATGGTTTACCAATTAATATAACCTCAGTATGCTTAATAGACACTGGATTGAATATT AAGGATGCGTTAATTAACTACTTTTTAAATCATGATATTAGCACATATAATAGTTATACA TATCATTCAGTTAATATAAATTATAAAAAACCTGATTCATTTAATTTTGGAATAAATAGC GAAAATTGTGACGAAGATAATTATTCTGAATGTGAGTCTACATTTTTGGAGAATCATAAT GGGCATGGAAAATATGAAGATAAATCGACAATCCAAGGCGATTCATTAAAATTGATAGAA AAAAAATATGACAAAAATGTGGATTTACAAAGGAGTGGTATAGATGTAGAAATATGCAAA GCATTTAATAATAGTAAGGAAAAAAAAAATAGTTTGAATATAATTCCTGTAATTAAATGC TTAGAATATTGTAAAACAAAAAATGTAAAAATAATTCATATGGATTATAATATAAATGAA CAAAATGAACAATTAATACAAATTATGGACGATTTAAAAAATTCAGAAATATTTGTAATT TTACCATCGGAAAAACTATTTAATGAAAAGCCTTATGAAGATAATTCTGTAATATATCCA TCTTCATTTTTTGAAAAATTTGAAAATGTTTTTTTTATTGGATCACTGGATTATTCGGAT ATGTCTTCTGATGACGCTGATATTGCTTCTAATTTTCAAATTCAAAAAAATGAATATTTA AAATACCGAAAAAATAATGTTTTTCTTTTGGATAGTATAAATAGTAGTTTAAAAAAAAGA GATGATCATGATATATTATATTATGAAATTAAATACAGTTCAGCATTTTTTATAAATATA ATAACAATCATTCTAAATATATATCCAAATATGTCTATTAAAGAGCTACGAAATATATTA AGCTATTCAATACCATCAAAAGAAACGGCACAATTAAAAACAGAAAACATTTTTGAAGGT AATTTTGACATAAATAAATTTATTCATATTTTATTAAATAGGGGAATAAATTCTTCTGGT TTTGTTCGAAAATATAAAGATGTAACACCGAATGAGTCCACGAATAAAATATTTCTTTTA GAGGATCAGAAAGATGCCGATATAGAACCACAGAAAGATTCCTCTATTGATATATATTGT GACGAAGGTGGTTCTGATGAAGATATAGTGAGTACTTCGAATGGGTTGGATGTGTATAGT GAGTATTCCCACAGCAATAATAAGAGTGATCAGTTATTAAATGATGAAAAAGGACTTAAA TATGAGACTTACAAAGATTTATATAGTGTTAAAGAAAACGATATTTATGTTTTTGAAAGT AACAATCCAACTAATAGCTCTTTTATGCAAATGAATTATGATGATAAAATAAAATCAAAA TATTTAGACAATTTAGAAGAGGCAAATTATCAAAATCATAGAACTCAATTTGAGATAAAT AGAAATGATAATAGATATCCTATAATTTCTGAAGACAATTTAAGAGATAGACAAAATATG CATAATATTCAGATGTTAAACGATGGTATAAATTATTCAGAAAATGCAAACAATATAGAA GAATTATATGATAATGATTTTGAAGATTATAGAGGAAAAGATTTAAATCCCGAGTATAAT AAAATTCGTGATAATAATAATAATAAGAATATAAATAAAGAATTCGGAATTTTAAATACT TGGAGAAAAAATAATGAGGGATTATATTTGAGTGATAGTGAAGAAGAAAGTCAGCCATTT AAATGGATGGATATGCATGTAGATGATATATATCAAGATCGAAAAAAACGATTAAAGGGA AATAATTATGATAATAGAAATGGGAGAGTAAGAAGAATATATGAAGATAATAAACGAGGT AGATATATAAAGAATCGAAATATGCAGAAAAAAAAAAATTTTGATCGTAATTTAAAAAAT AAAAGATATTTAAATAGAAGGACTAAAAGACATATCAATGAGAAAAATAAAAGGATTATG AGAGAAAAAAAAAATAAATATAATAATAGTGTATTAAAAAGAAATGAAATGAAATCACAT AATAATTCACAAAAAACTCCAAAAATAATTCCAAGAAAATATTCTAGATAA
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  • Fasta :-

    MVLLNGKLKYIAVVAIFYNLIILLVKEKFPYICTKKKFHAISNRILYEYLNNFVSKDIFR REDITLKNLNFVQTNLKSDKDAEIKENRDTQSVDDNMFQRVYKFILNFFYGNKKNRINKS MNYGKYDNFNKINDIFEFMRNNGLPINITSVCLIDTGLNIKDALINYFLNHDISTYNSYT YHSVNINYKKPDSFNFGINSENCDEDNYSECESTFLENHNGHGKYEDKSTIQGDSLKLIE KKYDKNVDLQRSGIDVEICKAFNNSKEKKNSLNIIPVIKCLEYCKTKNVKIIHMDYNINE QNEQLIQIMDDLKNSEIFVILPSEKLFNEKPYEDNSVIYPSSFFEKFENVFFIGSLDYSD MSSDDADIASNFQIQKNEYLKYRKNNVFLLDSINSSLKKRDDHDILYYEIKYSSAFFINI ITIILNIYPNMSIKELRNILSYSIPSKETAQLKTENIFEGNFDINKFIHILLNRGINSSG FVRKYKDVTPNESTNKIFLLEDQKDADIEPQKDSSIDIYCDEGGSDEDIVSTSNGLDVYS EYSHSNNKSDQLLNDEKGLKYETYKDLYSVKENDIYVFESNNPTNSSFMQMNYDDKIKSK YLDNLEEANYQNHRTQFEINRNDNRYPIISEDNLRDRQNMHNIQMLNDGINYSENANNIE ELYDNDFEDYRGKDLNPEYNKIRDNNNNKNINKEFGILNTWRKNNEGLYLSDSEEESQPF KWMDMHVDDIYQDRKKRLKGNNYDNRNGRVRRIYEDNKRGRYIKNRNMQKKKNFDRNLKN KRYLNRRTKRHINEKNKRIMREKKNKYNNSVLKRNEMKSHNNSQKTPKIIPRKYSR

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_1106900362 SYSDMSSDDA0.997unspPBANKA_1106900362 SYSDMSSDDA0.997unspPBANKA_1106900362 SYSDMSSDDA0.997unspPBANKA_1106900432 SYPNMSIKEL0.997unspPBANKA_1106900525 SDEGGSDEDI0.993unspPBANKA_1106900569 SKDLYSVKEN0.997unspPBANKA_1106900713 SYLSDSEEES0.995unspPBANKA_1106900823 SSHNNSQKTP0.99unspPBANKA_110690078 STNLKSDKDA0.997unspPBANKA_1106900229 SYEDKSTIQG0.992unsp

PBANKA_110690      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India