PBANKA_1114700 | rhomboid protease ROM9

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1114700OTHER0.9565680.0000350.043397
No Results

  • Fasta :-

    >PBANKA_1114700 MQKVTGMKFVGKGNTLTKNVHVYVHKRKLNKSNIFSNKSKENRYKHDKNDLRDNIYFLNN RINNERNSSTIYITANPSMNGFGKYIGNYSIRRFSKYSDKNIFNEQKRKCESLLFNFQNF EIKNYLLKLNKGRLENSNIQKKIKSIIIKFEENYKNILYDKYSFFKNLCKEKSDFYKYRI SKINRNNYKSNLNFPINFLNLFISNNNKSLKELVNVAKFRGKLFLNNIPTYYKYGIKNIP YFKAVLMHHYNKSPVTYSLIFLHFFVYFLWINAKPENMSYSYFSPAPTKSHSFPLLTSEF MYKYFCCSLKSLREKQLYTLVTNIISHNTIQSFLLNTISLFYIGRSLEILINSKNFFFTY IVSGIISSYIQILYQKNSSYGYKNVYVLGASGSISSILATYTFIHPNHKIYLYGVLGLPL ALFSSFYFLNELYSIIANKNDNIGHASHLTGMFLGILYYYSYVNKKFRI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1114700.fa Sequence name : PBANKA_1114700 Sequence length : 469 VALUES OF COMPUTED PARAMETERS Coef20 : 3.602 CoefTot : -2.512 ChDiff : 44 ZoneTo : 40 KR : 10 DE : 0 CleavSite : 37 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.994 1.871 0.282 0.812 MesoH : 0.513 0.656 -0.127 0.411 MuHd_075 : 35.201 21.140 10.791 7.837 MuHd_095 : 23.672 16.909 7.359 5.421 MuHd_100 : 26.810 19.994 8.825 6.288 MuHd_105 : 31.580 22.597 11.698 7.160 Hmax_075 : 12.133 11.667 1.180 4.107 Hmax_095 : 6.912 10.000 -0.427 3.740 Hmax_100 : 16.500 18.100 3.290 6.030 Hmax_105 : 14.000 15.517 2.644 6.113 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0721 0.9279 DFMC : 0.1105 0.8895 This protein is probably imported in mitochondria. f(Ser) = 0.0750 f(Arg) = 0.0250 CMi = 0.71429 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 469 PBANKA_1114700 MQKVTGMKFVGKGNTLTKNVHVYVHKRKLNKSNIFSNKSKENRYKHDKNDLRDNIYFLNNRINNERNSSTIYITANPSMN 80 GFGKYIGNYSIRRFSKYSDKNIFNEQKRKCESLLFNFQNFEIKNYLLKLNKGRLENSNIQKKIKSIIIKFEENYKNILYD 160 KYSFFKNLCKEKSDFYKYRISKINRNNYKSNLNFPINFLNLFISNNNKSLKELVNVAKFRGKLFLNNIPTYYKYGIKNIP 240 YFKAVLMHHYNKSPVTYSLIFLHFFVYFLWINAKPENMSYSYFSPAPTKSHSFPLLTSEFMYKYFCCSLKSLREKQLYTL 320 VTNIISHNTIQSFLLNTISLFYIGRSLEILINSKNFFFTYIVSGIISSYIQILYQKNSSYGYKNVYVLGASGSISSILAT 400 YTFIHPNHKIYLYGVLGLPLALFSSFYFLNELYSIIANKNDNIGHASHLTGMFLGILYYYSYVNKKFRI 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ..................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1114700 3 ----MQK|VT 0.074 . PBANKA_1114700 8 QKVTGMK|FV 0.113 . PBANKA_1114700 12 GMKFVGK|GN 0.068 . PBANKA_1114700 18 KGNTLTK|NV 0.087 . PBANKA_1114700 26 VHVYVHK|RK 0.059 . PBANKA_1114700 27 HVYVHKR|KL 0.207 . PBANKA_1114700 28 VYVHKRK|LN 0.081 . PBANKA_1114700 31 HKRKLNK|SN 0.091 . PBANKA_1114700 38 SNIFSNK|SK 0.097 . PBANKA_1114700 40 IFSNKSK|EN 0.072 . PBANKA_1114700 43 NKSKENR|YK 0.169 . PBANKA_1114700 45 SKENRYK|HD 0.073 . PBANKA_1114700 48 NRYKHDK|ND 0.061 . PBANKA_1114700 52 HDKNDLR|DN 0.103 . PBANKA_1114700 61 IYFLNNR|IN 0.070 . PBANKA_1114700 66 NRINNER|NS 0.107 . PBANKA_1114700 84 SMNGFGK|YI 0.088 . PBANKA_1114700 92 IGNYSIR|RF 0.098 . PBANKA_1114700 93 GNYSIRR|FS 0.138 . PBANKA_1114700 96 SIRRFSK|YS 0.305 . PBANKA_1114700 100 FSKYSDK|NI 0.070 . PBANKA_1114700 107 NIFNEQK|RK 0.060 . PBANKA_1114700 108 IFNEQKR|KC 0.203 . PBANKA_1114700 109 FNEQKRK|CE 0.082 . PBANKA_1114700 123 FQNFEIK|NY 0.062 . PBANKA_1114700 128 IKNYLLK|LN 0.064 . PBANKA_1114700 131 YLLKLNK|GR 0.052 . PBANKA_1114700 133 LKLNKGR|LE 0.079 . PBANKA_1114700 141 ENSNIQK|KI 0.072 . PBANKA_1114700 142 NSNIQKK|IK 0.148 . PBANKA_1114700 144 NIQKKIK|SI 0.117 . PBANKA_1114700 149 IKSIIIK|FE 0.083 . PBANKA_1114700 155 KFEENYK|NI 0.055 . PBANKA_1114700 161 KNILYDK|YS 0.062 . PBANKA_1114700 166 DKYSFFK|NL 0.072 . PBANKA_1114700 170 FFKNLCK|EK 0.061 . PBANKA_1114700 172 KNLCKEK|SD 0.079 . PBANKA_1114700 177 EKSDFYK|YR 0.081 . PBANKA_1114700 179 SDFYKYR|IS 0.122 . PBANKA_1114700 182 YKYRISK|IN 0.108 . PBANKA_1114700 185 RISKINR|NN 0.117 . PBANKA_1114700 189 INRNNYK|SN 0.081 . PBANKA_1114700 208 FISNNNK|SL 0.083 . PBANKA_1114700 211 NNNKSLK|EL 0.069 . PBANKA_1114700 218 ELVNVAK|FR 0.080 . PBANKA_1114700 220 VNVAKFR|GK 0.091 . PBANKA_1114700 222 VAKFRGK|LF 0.064 . PBANKA_1114700 233 NIPTYYK|YG 0.064 . PBANKA_1114700 237 YYKYGIK|NI 0.055 . PBANKA_1114700 243 KNIPYFK|AV 0.068 . PBANKA_1114700 252 LMHHYNK|SP 0.074 . PBANKA_1114700 274 FLWINAK|PE 0.061 . PBANKA_1114700 289 FSPAPTK|SH 0.079 . PBANKA_1114700 303 TSEFMYK|YF 0.081 . PBANKA_1114700 310 YFCCSLK|SL 0.081 . PBANKA_1114700 313 CSLKSLR|EK 0.068 . PBANKA_1114700 315 LKSLREK|QL 0.083 . PBANKA_1114700 345 SLFYIGR|SL 0.151 . PBANKA_1114700 354 EILINSK|NF 0.052 . PBANKA_1114700 376 IQILYQK|NS 0.064 . PBANKA_1114700 383 NSSYGYK|NV 0.096 . PBANKA_1114700 409 FIHPNHK|IY 0.061 . PBANKA_1114700 439 YSIIANK|ND 0.066 . PBANKA_1114700 465 YYSYVNK|KF 0.070 . PBANKA_1114700 466 YSYVNKK|FR 0.104 . PBANKA_1114700 468 YVNKKFR|I- 0.121 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1114700 ATGCAAAAGGTCACCGGAATGAAATTTGTGGGTAAGGGAAACACACTAACAAAAAATGTG CATGTGTATGTGCATAAAAGAAAATTAAATAAAAGTAATATTTTTTCTAATAAATCGAAA GAAAACAGATATAAACATGATAAAAACGATTTAAGAGACAATATATATTTTTTAAATAAT AGAATTAATAACGAGCGAAATAGTTCCACTATTTATATAACAGCTAATCCATCAATGAAT GGTTTTGGTAAATATATTGGGAACTATTCAATACGTAGATTTTCAAAATATTCTGACAAA AATATTTTCAATGAACAGAAACGGAAATGTGAGTCTTTATTATTTAATTTTCAAAATTTT GAAATAAAAAATTATTTATTAAAATTAAATAAAGGACGATTAGAGAATAGTAATATTCAA AAGAAAATAAAAAGTATAATTATAAAATTTGAAGAAAATTATAAAAATATATTATATGAC AAATATTCATTTTTTAAAAATCTGTGTAAAGAAAAAAGCGATTTTTATAAATATAGAATA AGCAAAATAAATCGTAACAATTATAAGAGCAATTTAAATTTTCCTATAAATTTTTTAAAT TTATTTATAAGTAATAATAATAAATCTTTAAAGGAGTTGGTAAATGTTGCAAAATTTAGA GGGAAATTATTTTTAAATAATATTCCAACATATTATAAATATGGAATAAAAAACATACCA TATTTTAAAGCAGTATTAATGCATCATTATAATAAGTCCCCAGTTACTTATAGTTTAATA TTTTTACATTTTTTTGTTTATTTTTTATGGATAAATGCTAAACCTGAAAATATGTCTTAT AGTTATTTTAGCCCAGCCCCAACAAAATCACATTCTTTTCCATTATTAACATCAGAATTT ATGTATAAATATTTTTGTTGTAGTTTGAAAAGTTTGAGAGAAAAACAATTATATACTTTG GTAACTAACATAATAAGTCACAATACTATACAATCTTTTTTACTAAATACAATTTCTTTA TTTTATATTGGACGTTCTTTAGAAATTTTAATAAATTCAAAAAATTTTTTTTTTACATAT ATAGTTAGTGGAATTATTTCATCTTATATACAAATATTATATCAAAAGAATTCAAGTTAT GGTTATAAAAACGTTTATGTTCTTGGTGCTAGCGGGAGTATAAGCTCTATATTAGCTACA TACACATTTATTCATCCAAATCATAAAATATATTTATATGGTGTTCTAGGCTTACCATTA GCCCTTTTTTCTTCATTTTACTTTTTAAACGAGCTATACAGCATTATAGCAAACAAGAAT GATAATATAGGGCACGCGTCACATTTGACAGGAATGTTCCTTGGAATTCTTTACTATTAT TCTTATGTTAATAAAAAGTTTCGAATATAA
  • Download Fasta

  • Fasta :-

    MQKVTGMKFVGKGNTLTKNVHVYVHKRKLNKSNIFSNKSKENRYKHDKNDLRDNIYFLNN RINNERNSSTIYITANPSMNGFGKYIGNYSIRRFSKYSDKNIFNEQKRKCESLLFNFQNF EIKNYLLKLNKGRLENSNIQKKIKSIIIKFEENYKNILYDKYSFFKNLCKEKSDFYKYRI SKINRNNYKSNLNFPINFLNLFISNNNKSLKELVNVAKFRGKLFLNNIPTYYKYGIKNIP YFKAVLMHHYNKSPVTYSLIFLHFFVYFLWINAKPENMSYSYFSPAPTKSHSFPLLTSEF MYKYFCCSLKSLREKQLYTLVTNIISHNTIQSFLLNTISLFYIGRSLEILINSKNFFFTY IVSGIISSYIQILYQKNSSYGYKNVYVLGASGSISSILATYTFIHPNHKIYLYGVLGLPL ALFSSFYFLNELYSIIANKNDNIGHASHLTGMFLGILYYYSYVNKKFRI

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_1114700209 SNNNKSLKEL0.996unspPBANKA_1114700209 SNNNKSLKEL0.996unspPBANKA_1114700209 SNNNKSLKEL0.996unspPBANKA_111470095 SIRRFSKYSD0.998unspPBANKA_111470098 SFSKYSDKNI0.991unsp

PBANKA_111470      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India