PBANKA_1126000 | E3 ubiquitin-protein ligase RNF5, putative

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No Results
No Results

  • Fasta :-

    >PBANKA_1126000 MNETSKEYDSLYDGMYDYGVNDELINIVNNDNLVNLNTQNKSVYPSLNQNKDSSNDQIKI SPKNEKQDEPNLFTDGLSSHTLNGIDIYKNNKTVENIEKEELDIICKDEASADKGSLLIS KDSINCNPCNSDYTNKIIENDNNNNSSSELNKIIDNSNEKNSINNSAHINDDSNIIKNNH DKIKNIYEKEINNDIKSIEETKDDKLNGLYQSSKELGSSPHELGFIIVENKCEQIKKNEG LLSKESKSGCDTEKKNKNAYEQEQIDKNSINSNKQNECNTNDNKNSSCQNNEKKETTNNN SSQENDCNRSTFECNICFDDVRDPVVTRCGHLFCWFCLSAWIKKNIDCPVCKAEVTKENV IPLYGRGKNSSDHKYSNNEEPRPTPKIKENVRRNNNYSNNLGLRASFGVWANPFSFGMSY TNMSDQSHFYDNIRPQMDAFHFEAASSCFFFLGFFLSLYILFYSS
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1126000.fa Sequence name : PBANKA_1126000 Sequence length : 465 VALUES OF COMPUTED PARAMETERS Coef20 : 2.672 CoefTot : -0.134 ChDiff : -19 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.388 2.053 0.426 0.819 MesoH : -0.170 0.106 -0.371 0.224 MuHd_075 : 34.407 16.290 8.075 2.835 MuHd_095 : 34.901 16.392 8.919 5.682 MuHd_100 : 44.619 19.956 10.799 6.899 MuHd_105 : 44.047 19.238 10.357 6.756 Hmax_075 : 2.333 2.450 -2.460 0.607 Hmax_095 : 8.700 3.000 -0.346 3.110 Hmax_100 : 10.000 3.500 -0.079 3.110 Hmax_105 : 1.925 0.350 -1.962 2.266 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9667 0.0333 DFMC : 0.9194 0.0806
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 465 PBANKA_1126000 MNETSKEYDSLYDGMYDYGVNDELINIVNNDNLVNLNTQNKSVYPSLNQNKDSSNDQIKISPKNEKQDEPNLFTDGLSSH 80 TLNGIDIYKNNKTVENIEKEELDIICKDEASADKGSLLISKDSINCNPCNSDYTNKIIENDNNNNSSSELNKIIDNSNEK 160 NSINNSAHINDDSNIIKNNHDKIKNIYEKEINNDIKSIEETKDDKLNGLYQSSKELGSSPHELGFIIVENKCEQIKKNEG 240 LLSKESKSGCDTEKKNKNAYEQEQIDKNSINSNKQNECNTNDNKNSSCQNNEKKETTNNNSSQENDCNRSTFECNICFDD 320 VRDPVVTRCGHLFCWFCLSAWIKKNIDCPVCKAEVTKENVIPLYGRGKNSSDHKYSNNEEPRPTPKIKENVRRNNNYSNN 400 LGLRASFGVWANPFSFGMSYTNMSDQSHFYDNIRPQMDAFHFEAASSCFFFLGFFLSLYILFYSS 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1126000 6 -MNETSK|EY 0.068 . PBANKA_1126000 41 NLNTQNK|SV 0.167 . PBANKA_1126000 51 PSLNQNK|DS 0.070 . PBANKA_1126000 59 SSNDQIK|IS 0.082 . PBANKA_1126000 63 QIKISPK|NE 0.068 . PBANKA_1126000 66 ISPKNEK|QD 0.077 . PBANKA_1126000 89 NGIDIYK|NN 0.066 . PBANKA_1126000 92 DIYKNNK|TV 0.082 . PBANKA_1126000 99 TVENIEK|EE 0.061 . PBANKA_1126000 107 ELDIICK|DE 0.061 . PBANKA_1126000 114 DEASADK|GS 0.057 . PBANKA_1126000 121 GSLLISK|DS 0.065 . PBANKA_1126000 136 NSDYTNK|II 0.067 . PBANKA_1126000 152 SSSELNK|II 0.080 . PBANKA_1126000 160 IDNSNEK|NS 0.058 . PBANKA_1126000 177 DDSNIIK|NN 0.078 . PBANKA_1126000 182 IKNNHDK|IK 0.084 . PBANKA_1126000 184 NNHDKIK|NI 0.093 . PBANKA_1126000 189 IKNIYEK|EI 0.075 . PBANKA_1126000 196 EINNDIK|SI 0.110 . PBANKA_1126000 202 KSIEETK|DD 0.063 . PBANKA_1126000 205 EETKDDK|LN 0.059 . PBANKA_1126000 214 GLYQSSK|EL 0.077 . PBANKA_1126000 231 FIIVENK|CE 0.058 . PBANKA_1126000 236 NKCEQIK|KN 0.068 . PBANKA_1126000 237 KCEQIKK|NE 0.082 . PBANKA_1126000 244 NEGLLSK|ES 0.060 . PBANKA_1126000 247 LLSKESK|SG 0.111 . PBANKA_1126000 254 SGCDTEK|KN 0.067 . PBANKA_1126000 255 GCDTEKK|NK 0.097 . PBANKA_1126000 257 DTEKKNK|NA 0.075 . PBANKA_1126000 267 EQEQIDK|NS 0.060 . PBANKA_1126000 274 NSINSNK|QN 0.072 . PBANKA_1126000 284 CNTNDNK|NS 0.060 . PBANKA_1126000 293 SCQNNEK|KE 0.064 . PBANKA_1126000 294 CQNNEKK|ET 0.116 . PBANKA_1126000 309 QENDCNR|ST 0.148 . PBANKA_1126000 322 ICFDDVR|DP 0.081 . PBANKA_1126000 328 RDPVVTR|CG 0.073 . PBANKA_1126000 343 CLSAWIK|KN 0.072 . PBANKA_1126000 344 LSAWIKK|NI 0.103 . PBANKA_1126000 352 IDCPVCK|AE 0.070 . PBANKA_1126000 357 CKAEVTK|EN 0.067 . PBANKA_1126000 366 VIPLYGR|GK 0.078 . PBANKA_1126000 368 PLYGRGK|NS 0.067 . PBANKA_1126000 374 KNSSDHK|YS 0.088 . PBANKA_1126000 382 SNNEEPR|PT 0.118 . PBANKA_1126000 386 EPRPTPK|IK 0.076 . PBANKA_1126000 388 RPTPKIK|EN 0.068 . PBANKA_1126000 392 KIKENVR|RN 0.072 . PBANKA_1126000 393 IKENVRR|NN 0.162 . PBANKA_1126000 404 SNNLGLR|AS 0.103 . PBANKA_1126000 434 HFYDNIR|PQ 0.104 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1126000 ATGAATGAAACTAGTAAAGAATATGATTCTCTCTATGATGGCATGTATGATTATGGTGTT AATGATGAATTAATAAATATTGTTAACAATGATAACTTAGTAAATTTGAATACACAAAAT AAATCAGTATATCCAAGCTTAAATCAAAATAAAGACTCAAGTAATGACCAAATAAAAATA TCCCCAAAAAATGAAAAACAAGACGAACCTAATTTATTTACAGATGGTTTATCATCGCAC ACTTTAAACGGCATTGATATATATAAAAATAATAAAACAGTTGAAAATATTGAAAAAGAA GAATTGGATATTATTTGCAAAGATGAAGCATCAGCAGACAAAGGTTCTTTATTAATCTCA AAAGATAGCATAAATTGTAATCCTTGTAATAGTGATTATACTAATAAAATTATTGAAAAC GATAATAATAATAATAGCTCGAGCGAATTAAATAAGATTATTGATAATTCAAATGAAAAA AATTCAATAAACAATTCTGCCCATATAAATGATGACTCAAATATTATAAAAAATAATCAT GATAAAATTAAGAATATATATGAGAAGGAAATTAATAATGATATAAAAAGCATTGAAGAA ACCAAAGATGATAAACTAAATGGTTTATATCAAAGTTCAAAAGAACTTGGATCATCACCC CATGAGCTTGGTTTTATAATTGTAGAGAATAAATGTGAACAAATAAAAAAAAACGAAGGA TTATTAAGTAAAGAATCTAAAAGTGGGTGCGATACAGAGAAGAAAAATAAAAATGCATAT GAACAAGAACAAATTGATAAAAACAGCATAAATAGTAATAAACAAAATGAATGCAATACA AACGATAATAAAAATAGCTCATGTCAAAATAATGAGAAAAAAGAAACTACGAATAATAAT TCTTCACAAGAAAATGATTGCAATAGAAGTACATTTGAATGTAATATATGTTTTGATGAT GTAAGAGATCCTGTTGTTACTAGATGTGGCCATTTATTTTGTTGGTTTTGTCTTTCTGCA TGGATTAAAAAAAATATTGATTGTCCTGTCTGCAAAGCAGAAGTAACCAAAGAAAATGTA ATACCTTTGTATGGTAGAGGAAAAAATAGTAGTGATCATAAATATTCAAATAATGAAGAA CCCAGACCTACACCTAAAATAAAAGAAAATGTTCGAAGAAATAACAACTATTCTAATAAT TTAGGATTAAGAGCTTCTTTTGGTGTATGGGCCAACCCCTTTTCTTTTGGAATGTCTTAT ACAAACATGTCTGACCAATCACATTTTTATGACAATATAAGACCACAAATGGATGCATTT CATTTTGAAGCTGCTTCTTCGTGTTTCTTTTTCTTAGGATTTTTTTTGTCTTTGTACATT TTGTTTTATTCATCTTAG
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  • Fasta :-

    No Results
  • title: Zn binding site
  • coordinates: C314,C317,C329,H331,C334,C337,C348,C351
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_1126000197 SNDIKSIEET0.996unspPBANKA_1126000197 SNDIKSIEET0.996unspPBANKA_1126000197 SNDIKSIEET0.996unspPBANKA_1126000219 SELGSSPHEL0.994unspPBANKA_1126000248 SKESKSGCDT0.998unspPBANKA_1126000302 SNNNSSQEND0.995unspPBANKA_112600010 SKEYDSLYDG0.997unspPBANKA_112600061 SQIKISPKNE0.997unsp

PBANKA_112600      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India