PBANKA_1132600 | ubiquitin-conjugating enzyme E2, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0005515      

  • Computed_GO_Functions:  protein binding      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1132600OTHER0.9999600.0000120.000028
No Results

  • Fasta :-

    >PBANKA_1132600 MCSSSRSSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTL AITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLS DPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATAPKEEPREVIIKKITEMGFSEDQA KNALIKANWNETLALNTLLENS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1132600.fa Sequence name : PBANKA_1132600 Sequence length : 202 VALUES OF COMPUTED PARAMETERS Coef20 : 4.261 CoefTot : 0.582 ChDiff : -6 ZoneTo : 9 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.706 1.224 0.026 0.381 MesoH : -0.449 0.092 -0.407 0.222 MuHd_075 : 5.930 4.619 3.039 0.822 MuHd_095 : 38.730 14.179 8.287 6.627 MuHd_100 : 48.321 19.720 9.941 8.900 MuHd_105 : 51.874 24.090 11.426 10.143 Hmax_075 : -8.200 1.100 -2.184 -0.110 Hmax_095 : 6.100 5.500 -0.302 1.910 Hmax_100 : 8.900 8.200 -0.047 2.730 Hmax_105 : 13.600 10.900 1.648 3.400 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7264 0.2736 DFMC : 0.6991 0.3009
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 202 PBANKA_1132600 MCSSSRSSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTK 80 IWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATAPKE 160 EPREVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLENS 240 ................................................................................ 80 ................................................................................ 160 .......................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1132600 6 -MCSSSR|SS 0.112 . PBANKA_1132600 9 SSSRSSK|EL 0.183 . PBANKA_1132600 13 SSKELLR|LQ 0.071 . PBANKA_1132600 16 ELLRLQK|EL 0.137 . PBANKA_1132600 19 RLQKELK|DI 0.091 . PBANKA_1132600 34 EIDAHIK|DS 0.068 . PBANKA_1132600 46 EWVGFIK|GP 0.064 . PBANKA_1132600 74 YPYNPPK|IK 0.070 . PBANKA_1132600 76 YNPPKIK|FV 0.100 . PBANKA_1132600 80 KIKFVTK|IW 0.087 . PBANKA_1132600 99 ICLDVLK|NE 0.052 . PBANKA_1132600 109 SPALTIR|TA 0.123 . PBANKA_1132600 134 QDAEVAK|MY 0.075 . PBANKA_1132600 137 EVAKMYK|EN 0.069 . PBANKA_1132600 145 NHALFVK|TA 0.073 . PBANKA_1132600 152 TASVWTK|TF 0.093 . PBANKA_1132600 159 TFATAPK|EE 0.061 . PBANKA_1132600 163 APKEEPR|EV 0.154 . PBANKA_1132600 168 PREVIIK|KI 0.079 . PBANKA_1132600 169 REVIIKK|IT 0.141 . PBANKA_1132600 181 FSEDQAK|NA 0.071 . PBANKA_1132600 186 AKNALIK|AN 0.071 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1132600 ATGTGTTCATCATCGAGAAGTTCAAAAGAGTTGTTGAGATTACAAAAGGAATTAAAAGAC ATTGAAAATGAAAATGTCCAAGAAATAGATGCCCACATAAAGGATTCGAATTTCTTTGAA TGGGTTGGATTTATAAAGGGTCCAGAAGGAACGCCATATGAAGGTGGTCACTTTACTTTA GCCATAACGATACCAAATGACTACCCATATAATCCCCCTAAAATTAAATTTGTTACTAAA ATATGGCACCCTAACATTTCAAGTCAAACTGGCGCTATATGTTTAGATGTTTTAAAAAAT GAATGGAGTCCTGCATTAACAATTAGAACAGCTCTTTTGTCAATTCAAGCTCTACTTTCT GACCCACAGCCAGATGATCCGCAAGATGCAGAAGTTGCAAAAATGTACAAAGAAAATCAT GCCCTCTTTGTTAAAACTGCAAGTGTATGGACAAAAACATTTGCAACGGCCCCAAAAGAA GAGCCTCGTGAAGTTATTATTAAGAAAATTACTGAAATGGGATTTAGCGAAGACCAAGCT AAGAATGCCTTAATAAAAGCAAACTGGAATGAAACCTTGGCATTAAATACATTATTAGAG AATTCTTAA
  • Download Fasta

  • Fasta :-

    MCSSSRSSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTL AITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLS DPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATAPKEEPREVIIKKITEMGFSEDQA KNALIKANWNETLALNTLLENS

  • title: active site cysteine
  • coordinates: C94
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_113260051 TGPEGTPYEG0.992unspPBANKA_113260051 TGPEGTPYEG0.992unspPBANKA_113260051 TGPEGTPYEG0.992unspPBANKA_11326007 SSSSRSSKEL0.996unspPBANKA_11326008 SSSRSSKELL0.997unsp

PBANKA_113260      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India