PBANKA_1134600 | rhomboid protease ROM7

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1134600SP0.0102670.9893860.000348CS pos: 16-17. ASG-NS. Pr: 0.5152
No Results

  • Fasta :-

    >PBANKA_1134600 MNLLILFIFIIYIASGNSLHYNKINSKGITTFINTKNTILKNEYKIYRFKKYNNVEKRIY SFKKNVLSLFNTLKNKEKITNLLENISNNVKIKFPNRFIYYNYLFNKCKLDRILIVINTL LYLYLNRVDKNEEKKIFFTKGNLVQIKDEQKAAKYQCNYYDIYKNKNYKTLFSSIFIHKN ILHLYFNMSSLMSIYKIISPIYSNSQILITYLLSGFLSNLISYIYYIKPPKKNIFLKDII DQNYYSRNIPLNKPNKIICGSSSAIYSLYGMYITHMIFFYFKNNYIANTSFLYNIFYSFL SSLLLENVSHFNHILGFMCGFFMSSTLILFDNN
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1134600.fa Sequence name : PBANKA_1134600 Sequence length : 333 VALUES OF COMPUTED PARAMETERS Coef20 : 4.313 CoefTot : -1.356 ChDiff : 27 ZoneTo : 42 KR : 4 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.506 2.253 0.447 0.825 MesoH : 0.838 0.803 -0.097 0.447 MuHd_075 : 27.234 22.564 9.466 7.368 MuHd_095 : 19.556 18.518 6.973 6.109 MuHd_100 : 21.036 20.590 7.105 6.443 MuHd_105 : 20.954 20.721 7.517 6.200 Hmax_075 : 8.517 15.983 1.169 4.492 Hmax_095 : 8.500 10.763 1.126 4.112 Hmax_100 : 14.500 12.700 0.256 4.220 Hmax_105 : 9.917 15.400 1.033 4.820 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.4517 0.5483 DFMC : 0.3349 0.6651 This protein is probably imported in chloroplast. f(Ser) = 0.0714 f(Arg) = 0.0000 CMi = 1.02041 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 333 PBANKA_1134600 MNLLILFIFIIYIASGNSLHYNKINSKGITTFINTKNTILKNEYKIYRFKKYNNVEKRIYSFKKNVLSLFNTLKNKEKIT 80 NLLENISNNVKIKFPNRFIYYNYLFNKCKLDRILIVINTLLYLYLNRVDKNEEKKIFFTKGNLVQIKDEQKAAKYQCNYY 160 DIYKNKNYKTLFSSIFIHKNILHLYFNMSSLMSIYKIISPIYSNSQILITYLLSGFLSNLISYIYYIKPPKKNIFLKDII 240 DQNYYSRNIPLNKPNKIICGSSSAIYSLYGMYITHMIFFYFKNNYIANTSFLYNIFYSFLSSLLLENVSHFNHILGFMCG 320 FFMSSTLILFDNN 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ............. 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1134600 23 NSLHYNK|IN 0.088 . PBANKA_1134600 27 YNKINSK|GI 0.073 . PBANKA_1134600 36 TTFINTK|NT 0.060 . PBANKA_1134600 41 TKNTILK|NE 0.070 . PBANKA_1134600 45 ILKNEYK|IY 0.062 . PBANKA_1134600 48 NEYKIYR|FK 0.087 . PBANKA_1134600 50 YKIYRFK|KY 0.070 . PBANKA_1134600 51 KIYRFKK|YN 0.370 . PBANKA_1134600 57 KYNNVEK|RI 0.068 . PBANKA_1134600 58 YNNVEKR|IY 0.251 . PBANKA_1134600 63 KRIYSFK|KN 0.071 . PBANKA_1134600 64 RIYSFKK|NV 0.159 . PBANKA_1134600 74 SLFNTLK|NK 0.070 . PBANKA_1134600 76 FNTLKNK|EK 0.061 . PBANKA_1134600 78 TLKNKEK|IT 0.074 . PBANKA_1134600 91 NISNNVK|IK 0.066 . PBANKA_1134600 93 SNNVKIK|FP 0.081 . PBANKA_1134600 97 KIKFPNR|FI 0.094 . PBANKA_1134600 107 YNYLFNK|CK 0.060 . PBANKA_1134600 109 YLFNKCK|LD 0.062 . PBANKA_1134600 112 NKCKLDR|IL 0.093 . PBANKA_1134600 127 LYLYLNR|VD 0.068 . PBANKA_1134600 130 YLNRVDK|NE 0.163 . PBANKA_1134600 134 VDKNEEK|KI 0.062 . PBANKA_1134600 135 DKNEEKK|IF 0.126 . PBANKA_1134600 140 KKIFFTK|GN 0.079 . PBANKA_1134600 147 GNLVQIK|DE 0.075 . PBANKA_1134600 151 QIKDEQK|AA 0.066 . PBANKA_1134600 154 DEQKAAK|YQ 0.075 . PBANKA_1134600 164 NYYDIYK|NK 0.055 . PBANKA_1134600 166 YDIYKNK|NY 0.071 . PBANKA_1134600 169 YKNKNYK|TL 0.075 . PBANKA_1134600 179 SSIFIHK|NI 0.064 . PBANKA_1134600 196 SLMSIYK|II 0.078 . PBANKA_1134600 228 SYIYYIK|PP 0.056 . PBANKA_1134600 231 YYIKPPK|KN 0.058 . PBANKA_1134600 232 YIKPPKK|NI 0.089 . PBANKA_1134600 237 KKNIFLK|DI 0.116 . PBANKA_1134600 247 DQNYYSR|NI 0.080 . PBANKA_1134600 253 RNIPLNK|PN 0.066 . PBANKA_1134600 256 PLNKPNK|II 0.074 . PBANKA_1134600 282 MIFFYFK|NN 0.067 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1134600 ATGAATCTTTTAATTTTGTTCATATTTATAATATATATTGCAAGCGGGAATTCGTTGCAT TATAACAAAATAAATTCCAAAGGAATAACTACATTTATAAATACTAAAAATACTATTTTG AAAAATGAATACAAAATATATCGATTCAAAAAATATAATAATGTAGAGAAAAGGATATAT TCATTTAAGAAAAATGTTTTAAGTTTATTTAATACTTTGAAAAATAAAGAGAAAATAACC AATTTACTTGAAAATATTTCAAATAATGTAAAAATTAAATTTCCTAATAGATTTATATAC TACAATTATTTATTTAATAAATGTAAATTAGACCGAATACTTATAGTAATAAACACACTG CTTTATTTATATTTAAATAGGGTTGATAAAAATGAAGAAAAAAAAATTTTTTTTACTAAG GGAAATTTAGTTCAAATAAAAGATGAACAGAAAGCTGCAAAATATCAATGTAATTATTAT GATATATATAAAAATAAGAATTATAAAACACTTTTCTCATCTATTTTCATCCATAAAAAT ATCTTACATTTATATTTTAATATGAGTTCCCTAATGTCCATATACAAAATTATATCGCCA ATTTATTCAAATAGCCAAATACTTATTACATATTTATTATCTGGGTTTCTTTCGAACTTA ATATCTTATATATACTATATAAAGCCCCCAAAAAAAAATATATTTTTAAAAGACATAATC GATCAAAATTATTATAGTCGTAATATACCCCTAAATAAGCCCAATAAAATAATTTGTGGA AGCAGTTCAGCTATATATTCCCTATATGGAATGTATATAACACATATGATTTTTTTTTAT TTTAAAAATAATTATATTGCGAATACAAGCTTCCTCTATAATATTTTCTATTCATTTTTA TCATCTCTACTTTTAGAAAATGTTAGCCATTTTAACCATATTTTGGGATTTATGTGTGGA TTTTTTATGTCGTCCACATTAATTTTGTTTGATAATAATTAA
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  • Fasta :-

    MNLLILFIFIIYIASGNSLHYNKINSKGITTFINTKNTILKNEYKIYRFKKYNNVEKRIY SFKKNVLSLFNTLKNKEKITNLLENISNNVKIKFPNRFIYYNYLFNKCKLDRILIVINTL LYLYLNRVDKNEEKKIFFTKGNLVQIKDEQKAAKYQCNYYDIYKNKNYKTLFSSIFIHKN ILHLYFNMSSLMSIYKIISPIYSNSQILITYLLSGFLSNLISYIYYIKPPKKNIFLKDII DQNYYSRNIPLNKPNKIICGSSSAIYSLYGMYITHMIFFYFKNNYIANTSFLYNIFYSFL SSLLLENVSHFNHILGFMCGFFMSSTLILFDNN

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PBANKA_113460      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India