PBANKA_1206600 | 26S protease regulatory subunit 4, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1206600OTHER0.9999870.0000020.000011
No Results

  • Fasta :-

    >PBANKA_1206600 MGNAQGGMNNNPYGFLGKKDDKDKGKDKEKKKLESSPPSHIGKRKKKKKGATGHSKLPTV TPNTKCRLKLLKLERIKDYLLLEEEFITNQEQIKTTDDKNYGKLKIDDLRGSPMSVGTLE ELIDENHGIIATSVGPEYYVNILSFVDKDLLEPGCSVLLNNKTNSVVGILLDEVDPLVSV MKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKT LLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDHAPSIVFIDEIDAVGTK RYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQL PNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDELSGADIKAICTEAGLLALRERRMK ITQLDLRKARDKALYQKKGNIPEGLYL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1206600.fa Sequence name : PBANKA_1206600 Sequence length : 447 VALUES OF COMPUTED PARAMETERS Coef20 : 2.412 CoefTot : -2.314 ChDiff : 1 ZoneTo : 19 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.671 1.453 -0.008 0.502 MesoH : -0.728 0.408 -0.388 0.253 MuHd_075 : 20.582 9.391 6.979 4.397 MuHd_095 : 19.925 15.806 4.800 3.445 MuHd_100 : 15.491 12.606 3.301 2.595 MuHd_105 : 5.714 5.943 2.568 0.922 Hmax_075 : 5.483 2.217 -0.534 3.453 Hmax_095 : 10.600 7.100 -0.676 3.540 Hmax_100 : 10.600 7.100 -0.676 3.470 Hmax_105 : 2.400 0.175 -3.722 1.140 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9895 0.0105 DFMC : 0.9862 0.0138
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 447 PBANKA_1206600 MGNAQGGMNNNPYGFLGKKDDKDKGKDKEKKKLESSPPSHIGKRKKKKKGATGHSKLPTVTPNTKCRLKLLKLERIKDYL 80 LLEEEFITNQEQIKTTDDKNYGKLKIDDLRGSPMSVGTLEELIDENHGIIATSVGPEYYVNILSFVDKDLLEPGCSVLLN 160 NKTNSVVGILLDEVDPLVSVMKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKT 240 LLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDHAPSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELL 320 NQLDGFDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDELSGA 400 DIKAICTEAGLLALRERRMKITQLDLRKARDKALYQKKGNIPEGLYL 480 ..............................................P................................. 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1206600 18 PYGFLGK|KD 0.058 . PBANKA_1206600 19 YGFLGKK|DD 0.105 . PBANKA_1206600 22 LGKKDDK|DK 0.073 . PBANKA_1206600 24 KKDDKDK|GK 0.076 . PBANKA_1206600 26 DDKDKGK|DK 0.089 . PBANKA_1206600 28 KDKGKDK|EK 0.073 . PBANKA_1206600 30 KGKDKEK|KK 0.059 . PBANKA_1206600 31 GKDKEKK|KL 0.148 . PBANKA_1206600 32 KDKEKKK|LE 0.097 . PBANKA_1206600 43 PPSHIGK|RK 0.075 . PBANKA_1206600 44 PSHIGKR|KK 0.247 . PBANKA_1206600 45 SHIGKRK|KK 0.115 . PBANKA_1206600 46 HIGKRKK|KK 0.133 . PBANKA_1206600 47 IGKRKKK|KK 0.528 *ProP* PBANKA_1206600 48 GKRKKKK|KG 0.152 . PBANKA_1206600 49 KRKKKKK|GA 0.258 . PBANKA_1206600 56 GATGHSK|LP 0.064 . PBANKA_1206600 65 TVTPNTK|CR 0.056 . PBANKA_1206600 67 TPNTKCR|LK 0.110 . PBANKA_1206600 69 NTKCRLK|LL 0.054 . PBANKA_1206600 72 CRLKLLK|LE 0.058 . PBANKA_1206600 75 KLLKLER|IK 0.080 . PBANKA_1206600 77 LKLERIK|DY 0.063 . PBANKA_1206600 94 TNQEQIK|TT 0.080 . PBANKA_1206600 99 IKTTDDK|NY 0.065 . PBANKA_1206600 103 DDKNYGK|LK 0.065 . PBANKA_1206600 105 KNYGKLK|ID 0.064 . PBANKA_1206600 110 LKIDDLR|GS 0.092 . PBANKA_1206600 148 ILSFVDK|DL 0.094 . PBANKA_1206600 162 SVLLNNK|TN 0.058 . PBANKA_1206600 182 PLVSVMK|VE 0.060 . PBANKA_1206600 185 SVMKVEK|AP 0.060 . PBANKA_1206600 205 SQIQEIK|EA 0.063 . PBANKA_1206600 224 YEDIGIK|PP 0.057 . PBANKA_1206600 227 IGIKPPK|GV 0.097 . PBANKA_1206600 239 GPPGTGK|TL 0.061 . PBANKA_1206600 244 GKTLLAK|AV 0.077 . PBANKA_1206600 256 TSATFLR|VV 0.199 . PBANKA_1206600 265 GSELIQK|YL 0.086 . PBANKA_1206600 272 YLGDGPK|LV 0.074 . PBANKA_1206600 275 DGPKLVR|EM 0.078 . PBANKA_1206600 279 LVREMFK|VA 0.088 . PBANKA_1206600 300 IDAVGTK|RY 0.061 . PBANKA_1206600 301 DAVGTKR|YE 0.162 . PBANKA_1206600 310 ATSGGER|EI 0.079 . PBANKA_1206600 314 GEREIQR|TM 0.087 . PBANKA_1206600 329 LDGFDSR|GD 0.100 . PBANKA_1206600 333 DSRGDVK|VI 0.062 . PBANKA_1206600 340 VIMATNR|ID 0.079 . PBANKA_1206600 350 LDPALIR|PG 0.073 . PBANKA_1206600 353 ALIRPGR|ID 0.232 . PBANKA_1206600 356 RPGRIDR|KI 0.193 . PBANKA_1206600 357 PGRIDRK|IQ 0.077 . PBANKA_1206600 366 LPNPDTK|TK 0.073 . PBANKA_1206600 368 NPDTKTK|RR 0.069 . PBANKA_1206600 369 PDTKTKR|RI 0.226 . PBANKA_1206600 370 DTKTKRR|IF 0.136 . PBANKA_1206600 378 FQIHTSK|MT 0.061 . PBANKA_1206600 394 EEFVMSK|DE 0.060 . PBANKA_1206600 403 LSGADIK|AI 0.069 . PBANKA_1206600 415 AGLLALR|ER 0.068 . PBANKA_1206600 417 LLALRER|RM 0.078 . PBANKA_1206600 418 LALRERR|MK 0.466 . PBANKA_1206600 420 LRERRMK|IT 0.120 . PBANKA_1206600 427 ITQLDLR|KA 0.086 . PBANKA_1206600 428 TQLDLRK|AR 0.091 . PBANKA_1206600 430 LDLRKAR|DK 0.312 . PBANKA_1206600 432 LRKARDK|AL 0.081 . PBANKA_1206600 437 DKALYQK|KG 0.060 . PBANKA_1206600 438 KALYQKK|GN 0.119 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1206600 ATGGGGAATGCACAAGGTGGTATGAATAATAATCCCTATGGATTTTTAGGAAAAAAGGAT GATAAAGATAAAGGAAAGGATAAGGAAAAAAAAAAACTAGAAAGCTCACCCCCATCACAT ATAGGAAAAAGAAAAAAAAAGAAAAAGGGAGCCACTGGACATTCCAAATTACCTACTGTT ACCCCTAATACAAAATGTCGATTAAAATTATTGAAATTAGAAAGGATAAAAGATTATTTA TTATTAGAAGAAGAATTTATAACAAATCAAGAACAGATAAAAACAACTGATGATAAAAAT TATGGAAAATTAAAAATTGACGATTTAAGAGGTTCACCTATGAGTGTTGGAACATTAGAA GAATTGATTGATGAAAATCATGGAATTATAGCTACCTCAGTAGGTCCAGAATATTATGTA AATATATTATCGTTTGTCGATAAAGATTTATTGGAACCTGGGTGTTCAGTTTTATTAAAT AATAAAACTAATAGTGTTGTAGGTATACTATTAGATGAAGTTGATCCGTTAGTATCTGTT ATGAAAGTTGAAAAGGCCCCATTAGAATCATACGCTGATATTGGTGGATTAGAATCACAA ATACAAGAAATAAAAGAAGCAGTTGAGTTACCCTTAACTCATCCTGAATTATATGAAGAT ATTGGTATTAAACCCCCCAAAGGTGTAATTTTATATGGCCCACCTGGTACTGGAAAAACA TTATTAGCAAAAGCTGTAGCAAATGAAACATCTGCTACATTCTTAAGAGTTGTAGGTTCT GAATTAATACAAAAATATTTAGGAGATGGTCCCAAATTAGTTAGAGAAATGTTTAAGGTT GCTGAAGACCATGCACCTTCTATTGTTTTTATTGATGAAATTGATGCAGTTGGTACAAAG AGATATGAAGCAACGAGTGGTGGGGAAAGAGAAATTCAAAGAACTATGTTAGAATTATTA AATCAATTAGATGGATTTGATTCACGAGGTGATGTTAAAGTTATTATGGCTACTAATAGA ATCGATTCTTTAGATCCAGCTTTAATTAGACCAGGTAGAATAGATAGAAAAATTCAATTG CCAAATCCAGATACTAAAACTAAGAGAAGGATTTTCCAAATACATACTAGTAAAATGACA ATGTCTCCTGATGTTGATCTAGAAGAATTTGTAATGTCAAAAGATGAATTATCCGGCGCC GATATCAAAGCTATATGTACCGAAGCTGGTTTATTAGCTCTTCGAGAAAGAAGAATGAAA ATTACTCAACTCGATTTGCGTAAGGCAAGAGATAAAGCTTTGTATCAGAAAAAGGGGAAT ATACCAGAGGGACTATATTTGTAA
  • Download Fasta

  • Fasta :-

    MGNAQGGMNNNPYGFLGKKDDKDKGKDKEKKKLESSPPSHIGKRKKKKKGATGHSKLPTV TPNTKCRLKLLKLERIKDYLLLEEEFITNQEQIKTTDDKNYGKLKIDDLRGSPMSVGTLE ELIDENHGIIATSVGPEYYVNILSFVDKDLLEPGCSVLLNNKTNSVVGILLDEVDPLVSV MKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKT LLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDHAPSIVFIDEIDAVGTK RYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQL PNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDELSGADIKAICTEAGLLALRERRMK ITQLDLRKARDKALYQKKGNIPEGLYL

  • title: ATP binding site
  • coordinates: P234,P235,G236,T237,G238,K239,T240,L241,D292,N339
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_1206600306 SYEATSGGER0.996unspPBANKA_1206600398 SKDELSGADI0.993unsp

PBANKA_120660      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India