PBANKA_1217800 | signal peptidase complex subunit 2, putative

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  • Fasta :-

    >PBANKA_1217800 MFSKKSLNENKDNTHIVRNLYSENELKKVTQDYLSEEIRNLNIYENVQYSNIRILLSIIL IIIGGYCCIFVNHKKEPILMMQSLASFFSVSIILYIWEYFYFEDYFMIIETNDDRTVKLF LKLDIKTSCLTLNYKLNKTVYSTPFELMKLYNEEGHLMKDYVNQTLKQFISSHGKNFKLI DKK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1217800.fa Sequence name : PBANKA_1217800 Sequence length : 183 VALUES OF COMPUTED PARAMETERS Coef20 : 3.758 CoefTot : -0.014 ChDiff : 2 ZoneTo : 8 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.335 2.812 0.736 0.936 MesoH : 0.093 0.931 -0.175 0.417 MuHd_075 : 32.355 23.716 8.935 7.822 MuHd_095 : 16.157 8.326 5.018 3.334 MuHd_100 : 26.449 13.601 8.451 5.567 MuHd_105 : 30.862 15.304 9.907 6.049 Hmax_075 : -1.200 7.875 -1.668 2.940 Hmax_095 : -4.900 1.488 -2.876 0.997 Hmax_100 : -0.900 0.200 -2.953 1.220 Hmax_105 : -1.800 0.117 -2.942 0.840 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8894 0.1106 DFMC : 0.9050 0.0950
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 183 PBANKA_1217800 MFSKKSLNENKDNTHIVRNLYSENELKKVTQDYLSEEIRNLNIYENVQYSNIRILLSIILIIIGGYCCIFVNHKKEPILM 80 MQSLASFFSVSIILYIWEYFYFEDYFMIIETNDDRTVKLFLKLDIKTSCLTLNYKLNKTVYSTPFELMKLYNEEGHLMKD 160 YVNQTLKQFISSHGKNFKLIDKK 240 ................................................................................ 80 ................................................................................ 160 ....................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1217800 4 ---MFSK|KS 0.058 . PBANKA_1217800 5 --MFSKK|SL 0.179 . PBANKA_1217800 11 KSLNENK|DN 0.080 . PBANKA_1217800 18 DNTHIVR|NL 0.081 . PBANKA_1217800 27 YSENELK|KV 0.072 . PBANKA_1217800 28 SENELKK|VT 0.122 . PBANKA_1217800 39 YLSEEIR|NL 0.113 . PBANKA_1217800 53 VQYSNIR|IL 0.081 . PBANKA_1217800 74 CIFVNHK|KE 0.057 . PBANKA_1217800 75 IFVNHKK|EP 0.085 . PBANKA_1217800 115 IETNDDR|TV 0.078 . PBANKA_1217800 118 NDDRTVK|LF 0.085 . PBANKA_1217800 122 TVKLFLK|LD 0.055 . PBANKA_1217800 126 FLKLDIK|TS 0.054 . PBANKA_1217800 135 CLTLNYK|LN 0.059 . PBANKA_1217800 138 LNYKLNK|TV 0.073 . PBANKA_1217800 149 TPFELMK|LY 0.074 . PBANKA_1217800 159 EEGHLMK|DY 0.067 . PBANKA_1217800 167 YVNQTLK|QF 0.059 . PBANKA_1217800 175 FISSHGK|NF 0.065 . PBANKA_1217800 178 SHGKNFK|LI 0.083 . PBANKA_1217800 182 NFKLIDK|K- 0.058 . PBANKA_1217800 183 FKLIDKK|-- 0.094 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1217800 ATGTTTAGTAAAAAGTCCCTAAATGAAAATAAAGATAACACACACATTGTAAGAAATCTA TACAGTGAAAATGAGCTTAAAAAAGTTACACAGGATTACTTAAGTGAGGAAATAAGAAAT CTAAATATCTATGAAAATGTTCAATATTCAAACATTAGGATCCTATTATCTATAATCCTG ATAATTATTGGAGGATATTGTTGTATTTTTGTCAATCACAAAAAAGAACCAATACTTATG ATGCAATCTCTGGCTTCCTTTTTTTCTGTATCAATAATATTATACATTTGGGAATATTTT TATTTTGAAGACTATTTCATGATAATAGAAACGAATGATGACAGAACAGTAAAGCTATTC TTAAAATTGGATATCAAGACAAGCTGTCTTACTTTAAATTACAAATTAAATAAAACCGTA TATTCTACACCTTTTGAGTTGATGAAATTATATAATGAAGAAGGGCACCTTATGAAAGAT TATGTAAACCAAACATTAAAGCAATTTATTTCAAGTCATGGAAAAAATTTTAAATTAATA GATAAAAAATAA
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PBANKA_121780      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India