PBANKA_1226200 | methionine aminopeptidase 1c, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:  GO:0003729      GO:0070006      

  • Curated_GO_Functions:  mRNA binding      metalloaminopeptidase activity      

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1226200SP0.0280800.9707610.001159CS pos: 17-18. FLC-KK. Pr: 0.6127
No Results

  • Fasta :-

    >PBANKA_1226200 MNVHIFLLLLFCGIFLCKKNSNNSNFRIIHQNGTRGNTKRNVKCVRKKKQYNYIHPNEIS KNKNDIRYHHYNFLITTCTHKKKLLTKKEKFKRQYNLNNSGEGFSNTIHNNVKKNTNNYS EEQLPSYHKYIENFKTRKIIHPSIRITDHDKKFMKCKESYNKLYSHLTETELFENFSYVG RQRKGILSPKYYLPKYIERPNYHKTGTPIYVNYENNSKSKEYISMINSNNEKDKNDYKTY STTNKYEYNNVKNDYDIEIISRNCKFARNLMDDISYIICEGITTNDIDIYILNKCVNNGF YPSPLNYHLFPKSSCISINEILCHGIPDNNVLYENDIVKVDISVYKDGYHADMCESFIVQ KISKEEKKKRKKKYDYIYLNDKLRTKHTKYIIKYNFDLTTNKIVKKGKYPSVRKVRYNPP NSKEHETEYIEEYDDNTNSVLGESLCAHKYYTYNDDSNNISENYEDELENFHRRYDEDFI FNPKKGELYNNLQQYIYQKGMEKNKKGKEMNRKFEFFDTSKQGITSMKKFMFEKNRDLIK TAYDCTMEAISICKPGVPFKNIAKVMDEYLKKKNNSYQYYSIVPNLCGHNIGKNFHEEPF IIHTLNNDDRKMCENLVFTIEPIITERSCDFITWPDNWTLSNSRYYYSAQFEHTILITKN GAKILTQKTETSPKYIWEND
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1226200.fa Sequence name : PBANKA_1226200 Sequence length : 680 VALUES OF COMPUTED PARAMETERS Coef20 : 4.244 CoefTot : -3.101 ChDiff : 27 ZoneTo : 57 KR : 11 DE : 0 CleavSite : 37 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.029 2.376 0.399 0.795 MesoH : -0.857 0.181 -0.385 0.212 MuHd_075 : 34.044 20.328 10.109 7.537 MuHd_095 : 40.249 18.306 10.605 8.587 MuHd_100 : 35.295 13.727 8.333 6.544 MuHd_105 : 27.049 14.614 6.906 5.502 Hmax_075 : 14.233 13.300 3.100 4.993 Hmax_095 : -3.500 0.400 -2.540 2.020 Hmax_100 : -4.300 7.800 1.682 1.600 Hmax_105 : -13.300 -3.733 -4.914 -1.062 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.1255 0.8745 DFMC : 0.1467 0.8533 This protein is probably imported in mitochondria. f(Ser) = 0.0351 f(Arg) = 0.0702 CMi = 0.20855 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 680 PBANKA_1226200 MNVHIFLLLLFCGIFLCKKNSNNSNFRIIHQNGTRGNTKRNVKCVRKKKQYNYIHPNEISKNKNDIRYHHYNFLITTCTH 80 KKKLLTKKEKFKRQYNLNNSGEGFSNTIHNNVKKNTNNYSEEQLPSYHKYIENFKTRKIIHPSIRITDHDKKFMKCKESY 160 NKLYSHLTETELFENFSYVGRQRKGILSPKYYLPKYIERPNYHKTGTPIYVNYENNSKSKEYISMINSNNEKDKNDYKTY 240 STTNKYEYNNVKNDYDIEIISRNCKFARNLMDDISYIICEGITTNDIDIYILNKCVNNGFYPSPLNYHLFPKSSCISINE 320 ILCHGIPDNNVLYENDIVKVDISVYKDGYHADMCESFIVQKISKEEKKKRKKKYDYIYLNDKLRTKHTKYIIKYNFDLTT 400 NKIVKKGKYPSVRKVRYNPPNSKEHETEYIEEYDDNTNSVLGESLCAHKYYTYNDDSNNISENYEDELENFHRRYDEDFI 480 FNPKKGELYNNLQQYIYQKGMEKNKKGKEMNRKFEFFDTSKQGITSMKKFMFEKNRDLIKTAYDCTMEAISICKPGVPFK 560 NIAKVMDEYLKKKNNSYQYYSIVPNLCGHNIGKNFHEEPFIIHTLNNDDRKMCENLVFTIEPIITERSCDFITWPDNWTL 640 SNSRYYYSAQFEHTILITKNGAKILTQKTETSPKYIWEND 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ....................................................P........................... 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ........................................ 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1226200 18 CGIFLCK|KN 0.057 . PBANKA_1226200 19 GIFLCKK|NS 0.076 . PBANKA_1226200 27 SNNSNFR|II 0.146 . PBANKA_1226200 35 IHQNGTR|GN 0.084 . PBANKA_1226200 39 GTRGNTK|RN 0.061 . PBANKA_1226200 40 TRGNTKR|NV 0.480 . PBANKA_1226200 43 NTKRNVK|CV 0.175 . PBANKA_1226200 46 RNVKCVR|KK 0.091 . PBANKA_1226200 47 NVKCVRK|KK 0.077 . PBANKA_1226200 48 VKCVRKK|KQ 0.098 . PBANKA_1226200 49 KCVRKKK|QY 0.341 . PBANKA_1226200 61 HPNEISK|NK 0.074 . PBANKA_1226200 63 NEISKNK|ND 0.063 . PBANKA_1226200 67 KNKNDIR|YH 0.098 . PBANKA_1226200 81 ITTCTHK|KK 0.052 . PBANKA_1226200 82 TTCTHKK|KL 0.099 . PBANKA_1226200 83 TCTHKKK|LL 0.150 . PBANKA_1226200 87 KKKLLTK|KE 0.059 . PBANKA_1226200 88 KKLLTKK|EK 0.100 . PBANKA_1226200 90 LLTKKEK|FK 0.071 . PBANKA_1226200 92 TKKEKFK|RQ 0.068 . PBANKA_1226200 93 KKEKFKR|QY 0.185 . PBANKA_1226200 113 TIHNNVK|KN 0.065 . PBANKA_1226200 114 IHNNVKK|NT 0.112 . PBANKA_1226200 129 QLPSYHK|YI 0.065 . PBANKA_1226200 135 KYIENFK|TR 0.057 . PBANKA_1226200 137 IENFKTR|KI 0.095 . PBANKA_1226200 138 ENFKTRK|II 0.112 . PBANKA_1226200 145 IIHPSIR|IT 0.119 . PBANKA_1226200 151 RITDHDK|KF 0.062 . PBANKA_1226200 152 ITDHDKK|FM 0.100 . PBANKA_1226200 155 HDKKFMK|CK 0.073 . PBANKA_1226200 157 KKFMKCK|ES 0.082 . PBANKA_1226200 162 CKESYNK|LY 0.066 . PBANKA_1226200 181 NFSYVGR|QR 0.097 . PBANKA_1226200 183 SYVGRQR|KG 0.074 . PBANKA_1226200 184 YVGRQRK|GI 0.175 . PBANKA_1226200 190 KGILSPK|YY 0.064 . PBANKA_1226200 195 PKYYLPK|YI 0.075 . PBANKA_1226200 199 LPKYIER|PN 0.098 . PBANKA_1226200 204 ERPNYHK|TG 0.062 . PBANKA_1226200 218 NYENNSK|SK 0.066 . PBANKA_1226200 220 ENNSKSK|EY 0.076 . PBANKA_1226200 232 INSNNEK|DK 0.080 . PBANKA_1226200 234 SNNEKDK|ND 0.081 . PBANKA_1226200 238 KDKNDYK|TY 0.068 . PBANKA_1226200 245 TYSTTNK|YE 0.071 . PBANKA_1226200 252 YEYNNVK|ND 0.070 . PBANKA_1226200 262 DIEIISR|NC 0.071 . PBANKA_1226200 265 IISRNCK|FA 0.229 . PBANKA_1226200 268 RNCKFAR|NL 0.137 . PBANKA_1226200 294 DIYILNK|CV 0.069 . PBANKA_1226200 312 NYHLFPK|SS 0.107 . PBANKA_1226200 339 YENDIVK|VD 0.061 . PBANKA_1226200 346 VDISVYK|DG 0.078 . PBANKA_1226200 361 ESFIVQK|IS 0.060 . PBANKA_1226200 364 IVQKISK|EE 0.059 . PBANKA_1226200 367 KISKEEK|KK 0.071 . PBANKA_1226200 368 ISKEEKK|KR 0.103 . PBANKA_1226200 369 SKEEKKK|RK 0.099 . PBANKA_1226200 370 KEEKKKR|KK 0.152 . PBANKA_1226200 371 EEKKKRK|KK 0.096 . PBANKA_1226200 372 EKKKRKK|KY 0.108 . PBANKA_1226200 373 KKKRKKK|YD 0.544 *ProP* PBANKA_1226200 382 YIYLNDK|LR 0.055 . PBANKA_1226200 384 YLNDKLR|TK 0.099 . PBANKA_1226200 386 NDKLRTK|HT 0.064 . PBANKA_1226200 389 LRTKHTK|YI 0.100 . PBANKA_1226200 393 HTKYIIK|YN 0.072 . PBANKA_1226200 402 FDLTTNK|IV 0.065 . PBANKA_1226200 405 TTNKIVK|KG 0.054 . PBANKA_1226200 406 TNKIVKK|GK 0.138 . PBANKA_1226200 408 KIVKKGK|YP 0.072 . PBANKA_1226200 413 GKYPSVR|KV 0.143 . PBANKA_1226200 414 KYPSVRK|VR 0.061 . PBANKA_1226200 416 PSVRKVR|YN 0.268 . PBANKA_1226200 423 YNPPNSK|EH 0.060 . PBANKA_1226200 449 ESLCAHK|YY 0.061 . PBANKA_1226200 473 ELENFHR|RY 0.086 . PBANKA_1226200 474 LENFHRR|YD 0.249 . PBANKA_1226200 484 DFIFNPK|KG 0.055 . PBANKA_1226200 485 FIFNPKK|GE 0.087 . PBANKA_1226200 499 QQYIYQK|GM 0.071 . PBANKA_1226200 503 YQKGMEK|NK 0.059 . PBANKA_1226200 505 KGMEKNK|KG 0.062 . PBANKA_1226200 506 GMEKNKK|GK 0.135 . PBANKA_1226200 508 EKNKKGK|EM 0.080 . PBANKA_1226200 512 KGKEMNR|KF 0.085 . PBANKA_1226200 513 GKEMNRK|FE 0.079 . PBANKA_1226200 521 EFFDTSK|QG 0.060 . PBANKA_1226200 528 QGITSMK|KF 0.061 . PBANKA_1226200 529 GITSMKK|FM 0.096 . PBANKA_1226200 534 KKFMFEK|NR 0.064 . PBANKA_1226200 536 FMFEKNR|DL 0.111 . PBANKA_1226200 540 KNRDLIK|TA 0.076 . PBANKA_1226200 554 EAISICK|PG 0.055 . PBANKA_1226200 560 KPGVPFK|NI 0.085 . PBANKA_1226200 564 PFKNIAK|VM 0.060 . PBANKA_1226200 571 VMDEYLK|KK 0.054 . PBANKA_1226200 572 MDEYLKK|KN 0.088 . PBANKA_1226200 573 DEYLKKK|NN 0.108 . PBANKA_1226200 593 CGHNIGK|NF 0.069 . PBANKA_1226200 610 TLNNDDR|KM 0.100 . PBANKA_1226200 611 LNNDDRK|MC 0.112 . PBANKA_1226200 627 EPIITER|SC 0.118 . PBANKA_1226200 644 WTLSNSR|YY 0.084 . PBANKA_1226200 659 HTILITK|NG 0.061 . PBANKA_1226200 663 ITKNGAK|IL 0.073 . PBANKA_1226200 668 AKILTQK|TE 0.055 . PBANKA_1226200 674 KTETSPK|YI 0.072 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1226200 ATGAACGTTCATATTTTCTTGTTACTGCTCTTTTGTGGTATATTTTTATGCAAAAAAAAT AGTAATAATAGCAATTTTCGAATTATACACCAAAATGGGACAAGGGGAAACACAAAAAGA AATGTAAAATGTGTAAGGAAAAAGAAACAATATAATTATATACACCCCAATGAAATTAGT AAAAATAAAAATGACATCCGTTATCATCACTACAATTTTCTTATAACCACATGCACACAC AAAAAAAAATTACTAACCAAAAAGGAAAAATTTAAAAGGCAATATAACCTTAACAATTCA GGCGAAGGTTTTTCGAACACAATCCATAATAATGTTAAAAAAAACACAAACAATTATTCA GAAGAACAATTACCATCATATCATAAATACATTGAAAATTTCAAAACAAGAAAAATTATT CATCCAAGTATAAGAATAACAGATCATGACAAAAAATTTATGAAATGTAAAGAAAGTTAT AACAAATTATATTCACATTTAACAGAAACTGAATTATTTGAAAATTTTTCATATGTTGGT AGACAAAGAAAAGGTATATTATCTCCAAAATATTATTTACCAAAATATATTGAAAGGCCA AATTATCATAAAACGGGTACACCTATTTATGTAAATTATGAAAATAATTCAAAATCGAAG GAATATATATCAATGATAAATAGTAATAATGAAAAAGACAAGAATGATTATAAAACATAT TCCACTACAAACAAATATGAATATAATAATGTAAAAAATGATTATGATATTGAAATAATT TCAAGAAATTGTAAATTTGCTAGAAATTTAATGGATGATATATCATATATAATATGTGAA GGTATAACAACAAACGATATAGATATATATATATTAAATAAATGTGTGAATAATGGATTT TACCCCTCTCCATTAAATTATCACTTATTTCCTAAAAGCTCATGTATATCAATAAATGAA ATATTATGTCATGGTATACCAGATAATAATGTTTTATATGAAAATGATATTGTAAAGGTT GATATAAGTGTGTATAAAGATGGATACCATGCTGATATGTGTGAAAGTTTTATCGTTCAA AAAATTTCAAAAGAAGAAAAAAAAAAACGGAAAAAAAAATATGACTATATATATTTAAAT GATAAACTTAGAACTAAACATACAAAATATATTATAAAATATAATTTCGATTTAACAACA AATAAAATAGTCAAAAAGGGAAAATATCCATCTGTTAGAAAAGTCAGATATAATCCACCA AATTCGAAAGAACATGAAACTGAATACATAGAAGAATATGATGATAATACTAACTCTGTT TTGGGGGAAAGTTTGTGTGCTCATAAATATTATACATATAATGATGACTCAAATAATATT TCTGAAAATTATGAAGACGAACTTGAAAATTTTCATCGTAGATATGATGAAGATTTTATT TTTAATCCCAAAAAAGGAGAATTATACAACAATCTTCAACAGTATATATATCAAAAGGGA ATGGAAAAGAATAAAAAAGGAAAAGAAATGAATAGAAAATTTGAATTTTTTGATACAAGT AAACAAGGTATAACGAGTATGAAAAAATTCATGTTTGAAAAAAATAGAGATTTAATTAAA ACAGCTTATGATTGTACTATGGAAGCTATAAGTATATGTAAGCCGGGTGTTCCTTTTAAA AATATAGCAAAAGTTATGGATGAATATTTAAAAAAAAAAAATAATTCGTATCAATATTAT TCTATTGTCCCCAATTTATGTGGGCATAATATTGGGAAAAATTTTCATGAGGAGCCTTTT ATTATACATACATTAAATAATGATGATAGAAAAATGTGTGAAAACTTAGTTTTTACAATA GAGCCAATTATAACGGAACGTTCTTGTGATTTTATTACTTGGCCCGATAACTGGACATTA TCAAATTCAAGGTATTATTATTCTGCTCAATTTGAGCACACCATCCTTATCACAAAAAAT GGAGCCAAAATTCTTACACAAAAAACAGAGACATCCCCCAAGTACATATGGGAAAACGAT TAA
  • Download Fasta

  • Fasta :-

    MNVHIFLLLLFCGIFLCKKNSNNSNFRIIHQNGTRGNTKRNVKCVRKKKQYNYIHPNEIS KNKNDIRYHHYNFLITTCTHKKKLLTKKEKFKRQYNLNNSGEGFSNTIHNNVKKNTNNYS EEQLPSYHKYIENFKTRKIIHPSIRITDHDKKFMKCKESYNKLYSHLTETELFENFSYVG RQRKGILSPKYYLPKYIERPNYHKTGTPIYVNYENNSKSKEYISMINSNNEKDKNDYKTY STTNKYEYNNVKNDYDIEIISRNCKFARNLMDDISYIICEGITTNDIDIYILNKCVNNGF YPSPLNYHLFPKSSCISINEILCHGIPDNNVLYENDIVKVDISVYKDGYHADMCESFIVQ KISKEEKKKRKKKYDYIYLNDKLRTKHTKYIIKYNFDLTTNKIVKKGKYPSVRKVRYNPP NSKEHETEYIEEYDDNTNSVLGESLCAHKYYTYNDDSNNISENYEDELENFHRRYDEDFI FNPKKGELYNNLQQYIYQKGMEKNKKGKEMNRKFEFFDTSKQGITSMKKFMFEKNRDLIK TAYDCTMEAISICKPGVPFKNIAKVMDEYLKKKNNSYQYYSIVPNLCGHNIGKNFHEEPF IIHTLNNDDRKMCENLVFTIEPIITERSCDFITWPDNWTLSNSRYYYSAQFEHTILITKN GAKILTQKTETSPKYIWEND

  • title: active site
  • coordinates: H324,D341,D352,H589,E621,E652
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_1226200363 SVQKISKEEK0.996unsp

PBANKA_122620      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India