PBANKA_1232500 | eukaryotic translation initiation factor 3 subunit B, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1232500OTHER0.9999020.0000770.000021
No Results

  • Fasta :-

    >PBANKA_1232500 MVKVEESELSDKELVDFLSDDSDDGNETLLNKKYAGKEALITLETKFPKIVTILGIPKVE EEKHSRLAEVLKKLFIRHLSAKISDSSIMNIKIYMPVDDEKKTKGICFVTFHDSFQANEA VKVLNKLKLDAKHLLTASKMDDIENIINRDERVMPINVVGFTREKIRWWLYDEKCREQFI VRYDSHFEVHWLDPLEKEPQLIYTTFKKNAPFSSVQWSNQGSYLVSFHNPGIALWGGDNF EKLIRLQHKSVKDISFSPNENYVLTWDGTPASLRNEKSICIWRVITGKLLRSFITPEYSP REKIFPHFLWGPDDKYIACIGKQKEVYIYELPSMLLLEDHEKKRTPLKYSMVKEFDWSPV DNIVAIWIPETNNTPGTLILVEIPSRKELVSRKIYDVSQASIHWQSKGDYLCLKTTIVKK IGKKGKKEYTQLEIFRMREKNIPVDNIQIEGVKTKQFHWEESNSNRFALIVRDEATSRQQ IRFYKILNKGTTRNVKWTSTFDINNQMNFMKWSPQGTFFILASLLSEGMLYFCFLNSNDQ VEVIHKDEHLLVNSVAWSNCGRYLVTSVSNLSGISSSNYKEENSETGFYVWTFQGRCLMT VKKPSFYQFFFRPHPKSLFSDKLKIDIKNNLKDYSKKFDVIDEKIRNSKKNQLISERQNV ENSFNEKLEKITRLFQSFKEYELFRRNWETFESQFEWEEKTVVIEHVLSVKQEIFA
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1232500.fa Sequence name : PBANKA_1232500 Sequence length : 716 VALUES OF COMPUTED PARAMETERS Coef20 : 3.355 CoefTot : -0.113 ChDiff : 8 ZoneTo : 4 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.729 1.841 0.275 0.694 MesoH : -0.246 0.267 -0.351 0.226 MuHd_075 : 24.353 16.058 7.463 4.690 MuHd_095 : 18.106 9.033 4.943 2.926 MuHd_100 : 19.050 9.081 5.255 2.103 MuHd_105 : 25.232 14.501 6.527 4.175 Hmax_075 : 4.667 13.650 0.148 4.060 Hmax_095 : -0.962 9.275 -1.738 3.447 Hmax_100 : -5.400 8.200 -2.176 2.580 Hmax_105 : 6.700 12.200 0.108 4.060 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9451 0.0549 DFMC : 0.9689 0.0311
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 716 PBANKA_1232500 MVKVEESELSDKELVDFLSDDSDDGNETLLNKKYAGKEALITLETKFPKIVTILGIPKVEEEKHSRLAEVLKKLFIRHLS 80 AKISDSSIMNIKIYMPVDDEKKTKGICFVTFHDSFQANEAVKVLNKLKLDAKHLLTASKMDDIENIINRDERVMPINVVG 160 FTREKIRWWLYDEKCREQFIVRYDSHFEVHWLDPLEKEPQLIYTTFKKNAPFSSVQWSNQGSYLVSFHNPGIALWGGDNF 240 EKLIRLQHKSVKDISFSPNENYVLTWDGTPASLRNEKSICIWRVITGKLLRSFITPEYSPREKIFPHFLWGPDDKYIACI 320 GKQKEVYIYELPSMLLLEDHEKKRTPLKYSMVKEFDWSPVDNIVAIWIPETNNTPGTLILVEIPSRKELVSRKIYDVSQA 400 SIHWQSKGDYLCLKTTIVKKIGKKGKKEYTQLEIFRMREKNIPVDNIQIEGVKTKQFHWEESNSNRFALIVRDEATSRQQ 480 IRFYKILNKGTTRNVKWTSTFDINNQMNFMKWSPQGTFFILASLLSEGMLYFCFLNSNDQVEVIHKDEHLLVNSVAWSNC 560 GRYLVTSVSNLSGISSSNYKEENSETGFYVWTFQGRCLMTVKKPSFYQFFFRPHPKSLFSDKLKIDIKNNLKDYSKKFDV 640 IDEKIRNSKKNQLISERQNVENSFNEKLEKITRLFQSFKEYELFRRNWETFESQFEWEEKTVVIEHVLSVKQEIFA 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............................................................................ 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1232500 3 ----MVK|VE 0.061 . PBANKA_1232500 12 ESELSDK|EL 0.060 . PBANKA_1232500 32 NETLLNK|KY 0.057 . PBANKA_1232500 33 ETLLNKK|YA 0.112 . PBANKA_1232500 37 NKKYAGK|EA 0.072 . PBANKA_1232500 46 LITLETK|FP 0.059 . PBANKA_1232500 49 LETKFPK|IV 0.081 . PBANKA_1232500 58 TILGIPK|VE 0.057 . PBANKA_1232500 63 PKVEEEK|HS 0.061 . PBANKA_1232500 66 EEEKHSR|LA 0.094 . PBANKA_1232500 72 RLAEVLK|KL 0.067 . PBANKA_1232500 73 LAEVLKK|LF 0.093 . PBANKA_1232500 77 LKKLFIR|HL 0.143 . PBANKA_1232500 82 IRHLSAK|IS 0.104 . PBANKA_1232500 92 SSIMNIK|IY 0.070 . PBANKA_1232500 101 MPVDDEK|KT 0.065 . PBANKA_1232500 102 PVDDEKK|TK 0.098 . PBANKA_1232500 104 DDEKKTK|GI 0.083 . PBANKA_1232500 122 QANEAVK|VL 0.062 . PBANKA_1232500 126 AVKVLNK|LK 0.057 . PBANKA_1232500 128 KVLNKLK|LD 0.064 . PBANKA_1232500 132 KLKLDAK|HL 0.067 . PBANKA_1232500 139 HLLTASK|MD 0.061 . PBANKA_1232500 149 IENIINR|DE 0.101 . PBANKA_1232500 152 IINRDER|VM 0.205 . PBANKA_1232500 163 NVVGFTR|EK 0.073 . PBANKA_1232500 165 VGFTREK|IR 0.054 . PBANKA_1232500 167 FTREKIR|WW 0.100 . PBANKA_1232500 174 WWLYDEK|CR 0.060 . PBANKA_1232500 176 LYDEKCR|EQ 0.085 . PBANKA_1232500 182 REQFIVR|YD 0.115 . PBANKA_1232500 197 WLDPLEK|EP 0.060 . PBANKA_1232500 207 LIYTTFK|KN 0.060 . PBANKA_1232500 208 IYTTFKK|NA 0.089 . PBANKA_1232500 242 GGDNFEK|LI 0.063 . PBANKA_1232500 245 NFEKLIR|LQ 0.083 . PBANKA_1232500 249 LIRLQHK|SV 0.147 . PBANKA_1232500 252 LQHKSVK|DI 0.100 . PBANKA_1232500 274 GTPASLR|NE 0.069 . PBANKA_1232500 277 ASLRNEK|SI 0.200 . PBANKA_1232500 283 KSICIWR|VI 0.096 . PBANKA_1232500 288 WRVITGK|LL 0.066 . PBANKA_1232500 291 ITGKLLR|SF 0.127 . PBANKA_1232500 301 TPEYSPR|EK 0.084 . PBANKA_1232500 303 EYSPREK|IF 0.067 . PBANKA_1232500 315 LWGPDDK|YI 0.086 . PBANKA_1232500 322 YIACIGK|QK 0.068 . PBANKA_1232500 324 ACIGKQK|EV 0.078 . PBANKA_1232500 342 LLEDHEK|KR 0.059 . PBANKA_1232500 343 LEDHEKK|RT 0.085 . PBANKA_1232500 344 EDHEKKR|TP 0.142 . PBANKA_1232500 348 KKRTPLK|YS 0.096 . PBANKA_1232500 353 LKYSMVK|EF 0.066 . PBANKA_1232500 386 LVEIPSR|KE 0.069 . PBANKA_1232500 387 VEIPSRK|EL 0.067 . PBANKA_1232500 392 RKELVSR|KI 0.110 . PBANKA_1232500 393 KELVSRK|IY 0.100 . PBANKA_1232500 407 SIHWQSK|GD 0.076 . PBANKA_1232500 414 GDYLCLK|TT 0.064 . PBANKA_1232500 419 LKTTIVK|KI 0.071 . PBANKA_1232500 420 KTTIVKK|IG 0.089 . PBANKA_1232500 423 IVKKIGK|KG 0.062 . PBANKA_1232500 424 VKKIGKK|GK 0.089 . PBANKA_1232500 426 KIGKKGK|KE 0.083 . PBANKA_1232500 427 IGKKGKK|EY 0.108 . PBANKA_1232500 436 TQLEIFR|MR 0.101 . PBANKA_1232500 438 LEIFRMR|EK 0.086 . PBANKA_1232500 440 IFRMREK|NI 0.062 . PBANKA_1232500 453 IQIEGVK|TK 0.054 . PBANKA_1232500 455 IEGVKTK|QF 0.090 . PBANKA_1232500 466 EESNSNR|FA 0.170 . PBANKA_1232500 472 RFALIVR|DE 0.102 . PBANKA_1232500 478 RDEATSR|QQ 0.078 . PBANKA_1232500 482 TSRQQIR|FY 0.143 . PBANKA_1232500 485 QQIRFYK|IL 0.169 . PBANKA_1232500 489 FYKILNK|GT 0.066 . PBANKA_1232500 493 LNKGTTR|NV 0.091 . PBANKA_1232500 496 GTTRNVK|WT 0.120 . PBANKA_1232500 511 NQMNFMK|WS 0.081 . PBANKA_1232500 546 QVEVIHK|DE 0.064 . PBANKA_1232500 562 AWSNCGR|YL 0.121 . PBANKA_1232500 580 ISSSNYK|EE 0.065 . PBANKA_1232500 596 VWTFQGR|CL 0.097 . PBANKA_1232500 602 RCLMTVK|KP 0.060 . PBANKA_1232500 603 CLMTVKK|PS 0.112 . PBANKA_1232500 612 FYQFFFR|PH 0.109 . PBANKA_1232500 616 FFRPHPK|SL 0.082 . PBANKA_1232500 622 KSLFSDK|LK 0.071 . PBANKA_1232500 624 LFSDKLK|ID 0.065 . PBANKA_1232500 628 KLKIDIK|NN 0.056 . PBANKA_1232500 632 DIKNNLK|DY 0.073 . PBANKA_1232500 636 NLKDYSK|KF 0.062 . PBANKA_1232500 637 LKDYSKK|FD 0.108 . PBANKA_1232500 644 FDVIDEK|IR 0.058 . PBANKA_1232500 646 VIDEKIR|NS 0.077 . PBANKA_1232500 649 EKIRNSK|KN 0.093 . PBANKA_1232500 650 KIRNSKK|NQ 0.114 . PBANKA_1232500 657 NQLISER|QN 0.072 . PBANKA_1232500 667 ENSFNEK|LE 0.059 . PBANKA_1232500 670 FNEKLEK|IT 0.060 . PBANKA_1232500 673 KLEKITR|LF 0.071 . PBANKA_1232500 679 RLFQSFK|EY 0.067 . PBANKA_1232500 685 KEYELFR|RN 0.087 . PBANKA_1232500 686 EYELFRR|NW 0.169 . PBANKA_1232500 700 QFEWEEK|TV 0.068 . PBANKA_1232500 711 EHVLSVK|QE 0.060 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1232500 ATGGTTAAGGTTGAAGAAAGTGAATTAAGCGACAAGGAGCTTGTCGATTTTTTATCAGAT GATAGTGATGATGGGAATGAAACTTTGTTAAATAAAAAATATGCAGGAAAAGAAGCCTTG ATTACCCTCGAAACAAAGTTCCCTAAAATAGTTACAATATTGGGTATACCAAAAGTAGAA GAAGAAAAACATAGTAGATTAGCAGAAGTTTTAAAGAAATTATTTATAAGGCATTTAAGT GCTAAAATAAGTGACTCTTCAATAATGAATATAAAAATCTATATGCCTGTAGATGACGAA AAAAAAACAAAAGGAATATGTTTTGTTACATTTCATGACAGTTTTCAAGCAAATGAAGCA GTAAAAGTATTAAATAAATTAAAATTGGATGCAAAACATTTATTAACAGCATCAAAAATG GATGATATAGAAAATATAATAAATAGAGATGAACGCGTAATGCCTATAAATGTTGTTGGA TTCACAAGAGAAAAAATAAGATGGTGGTTATATGATGAAAAATGCCGAGAGCAATTTATT GTTAGGTACGATAGTCATTTTGAAGTTCATTGGTTAGATCCCTTAGAAAAAGAACCACAA TTAATTTATACTACCTTTAAAAAAAATGCCCCATTTTCAAGCGTTCAATGGAGTAATCAA GGATCATACTTAGTCAGTTTTCATAACCCAGGTATAGCATTATGGGGTGGAGATAATTTT GAAAAATTAATAAGATTACAGCATAAAAGTGTCAAAGATATAAGTTTTTCACCAAATGAA AATTATGTACTAACTTGGGATGGTACTCCTGCTTCATTAAGAAATGAAAAATCTATTTGT ATATGGAGAGTAATAACAGGAAAATTGCTTCGATCTTTTATTACACCTGAATATAGTCCA CGAGAAAAAATATTTCCTCATTTTTTATGGGGCCCTGATGATAAATATATTGCATGTATA GGAAAACAAAAAGAGGTATATATATATGAATTACCATCTATGTTATTATTAGAAGATCAT GAGAAAAAAAGAACCCCATTAAAATATTCGATGGTTAAAGAATTTGATTGGTCTCCTGTA GATAATATAGTTGCAATTTGGATACCTGAAACAAATAACACACCAGGGACTTTAATATTA GTAGAAATTCCATCTAGAAAAGAACTAGTATCTCGAAAAATTTATGATGTTAGTCAGGCA TCTATTCATTGGCAAAGCAAAGGAGATTATTTATGTCTTAAAACAACTATTGTAAAAAAA ATTGGAAAAAAAGGAAAAAAAGAATACACACAATTAGAAATTTTCAGAATGCGAGAAAAA AATATACCTGTAGATAATATACAAATTGAAGGAGTAAAAACTAAACAATTTCATTGGGAA GAATCAAATAGTAATAGGTTTGCATTAATAGTAAGAGATGAAGCTACAAGTAGACAACAA ATAAGATTTTATAAAATATTAAATAAAGGTACTACTAGAAATGTTAAATGGACTAGTACA TTTGATATAAATAACCAAATGAATTTTATGAAATGGTCACCACAAGGAACCTTTTTTATA TTAGCATCATTATTATCAGAAGGAATGCTATATTTCTGTTTTTTAAATTCAAACGATCAA GTTGAAGTTATACATAAAGATGAACATTTATTAGTAAATTCTGTTGCATGGAGCAATTGT GGTAGATACCTTGTTACATCTGTTTCGAATTTATCTGGTATATCAAGTTCTAACTATAAA GAAGAAAATAGTGAAACAGGTTTTTATGTATGGACATTTCAAGGTAGATGTTTAATGACT GTTAAAAAACCATCATTTTATCAATTTTTCTTTCGACCTCATCCAAAATCATTATTTAGT GATAAATTGAAAATTGATATAAAAAATAATCTAAAAGATTATTCTAAAAAATTCGATGTT ATAGATGAAAAAATTAGAAATTCTAAAAAGAACCAATTAATTTCAGAAAGGCAAAATGTT GAAAATTCATTTAATGAAAAATTGGAGAAAATCACAAGATTATTCCAATCCTTTAAAGAG TATGAATTGTTCAGGAGAAATTGGGAAACATTTGAAAGCCAATTTGAGTGGGAAGAAAAA ACAGTTGTTATTGAACATGTCCTTTCTGTTAAACAAGAAATCTTCGCATAG
  • Download Fasta

  • Fasta :-

    MVKVEESELSDKELVDFLSDDSDDGNETLLNKKYAGKEALITLETKFPKIVTILGIPKVE EEKHSRLAEVLKKLFIRHLSAKISDSSIMNIKIYMPVDDEKKTKGICFVTFHDSFQANEA VKVLNKLKLDAKHLLTASKMDDIENIINRDERVMPINVVGFTREKIRWWLYDEKCREQFI VRYDSHFEVHWLDPLEKEPQLIYTTFKKNAPFSSVQWSNQGSYLVSFHNPGIALWGGDNF EKLIRLQHKSVKDISFSPNENYVLTWDGTPASLRNEKSICIWRVITGKLLRSFITPEYSP REKIFPHFLWGPDDKYIACIGKQKEVYIYELPSMLLLEDHEKKRTPLKYSMVKEFDWSPV DNIVAIWIPETNNTPGTLILVEIPSRKELVSRKIYDVSQASIHWQSKGDYLCLKTTIVKK IGKKGKKEYTQLEIFRMREKNIPVDNIQIEGVKTKQFHWEESNSNRFALIVRDEATSRQQ IRFYKILNKGTTRNVKWTSTFDINNQMNFMKWSPQGTFFILASLLSEGMLYFCFLNSNDQ VEVIHKDEHLLVNSVAWSNCGRYLVTSVSNLSGISSSNYKEENSETGFYVWTFQGRCLMT VKKPSFYQFFFRPHPKSLFSDKLKIDIKNNLKDYSKKFDVIDEKIRNSKKNQLISERQNV ENSFNEKLEKITRLFQSFKEYELFRRNWETFESQFEWEEKTVVIEHVLSVKQEIFA

  • title: polypeptide substrate binding site
  • coordinates: I53,I56,K63,R66,L67,E69,V70,L71,K73,L74,R77,V123,L124,N125,K126,K128,L129,L134,L135
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_1232500250 SLQHKSVKDI0.997unspPBANKA_1232500250 SLQHKSVKDI0.997unspPBANKA_1232500250 SLQHKSVKDI0.997unspPBANKA_1232500257 SDISFSPNEN0.991unspPBANKA_1232500299 STPEYSPREK0.996unspPBANKA_1232500358 SEFDWSPVDN0.994unspPBANKA_1232500648 SKIRNSKKNQ0.997unspPBANKA_1232500677 SRLFQSFKEY0.991unspPBANKA_123250010 SESELSDKEL0.997unspPBANKA_1232500185 SVRYDSHFEV0.993unsp

PBANKA_123250      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India