PBANKA_1242000 | ubiquitin carboxyl-terminal hydrolase 14, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1242000OTHER0.9999130.0000320.000055
No Results

  • Fasta :-

    >PBANKA_1242000 MTIVKVTVKWKTNIYNDLELNINEPIALFKEQLWKITSVPPEKQKLMYKGLIKNDTNLHT LNIKNNDKIMLVGSSELLAEKPDKITFFEDLSKEDKEKLNEDKNIIFEEQGIVNLGNTCY FNAVLQFLTSFNDLGEFLSNIKKTQNFGFRSNKDILFDCYIHFSQTFGKSSKPYVPLELL KAFRDVFPKFKTINIRTKQYAQQDAEECMNAILTSLNDHTESKIIDKLFSFKIIGKIKCV EQNSQDDEPNKQKESQKNENSQKPESDKNNPSQNEENDHFELTQEKHNKLICYMGTQNTP VNHLHEGIRLSLIEKIKKKKNDNDKEDTLYEKKSEIDSLPPYLIIHFLRFESKRIVDTSN TVSVVTAKICRKVSFPEIFDIYDFCSDRIKADLKISRNIIMNRKDIKTPIVQENKNEDDK MLETLTNQDDKNKEFVEIPNGEYELISVITHKGRNEESGHYIAWKKMRNRVNKNSEYDAN GPRTKKNKSNNEPTWFKMDDDKVSLHNFSSLDLFGGCSDYNTAVLLLYKRKTISCTKDEL NKYSV
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1242000.fa Sequence name : PBANKA_1242000 Sequence length : 545 VALUES OF COMPUTED PARAMETERS Coef20 : 3.992 CoefTot : -0.764 ChDiff : 1 ZoneTo : 16 KR : 3 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.900 1.076 -0.021 0.454 MesoH : -0.825 0.118 -0.504 0.150 MuHd_075 : 5.547 13.288 3.883 2.989 MuHd_095 : 26.930 19.147 9.084 6.480 MuHd_100 : 23.716 20.408 8.117 6.464 MuHd_105 : 15.656 16.434 5.329 4.978 Hmax_075 : 1.750 13.800 -0.977 3.820 Hmax_095 : 6.213 11.100 -0.051 4.209 Hmax_100 : 5.900 11.900 0.025 4.860 Hmax_105 : 6.900 14.000 0.093 4.387 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8497 0.1503 DFMC : 0.8787 0.1213
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 545 PBANKA_1242000 MTIVKVTVKWKTNIYNDLELNINEPIALFKEQLWKITSVPPEKQKLMYKGLIKNDTNLHTLNIKNNDKIMLVGSSELLAE 80 KPDKITFFEDLSKEDKEKLNEDKNIIFEEQGIVNLGNTCYFNAVLQFLTSFNDLGEFLSNIKKTQNFGFRSNKDILFDCY 160 IHFSQTFGKSSKPYVPLELLKAFRDVFPKFKTINIRTKQYAQQDAEECMNAILTSLNDHTESKIIDKLFSFKIIGKIKCV 240 EQNSQDDEPNKQKESQKNENSQKPESDKNNPSQNEENDHFELTQEKHNKLICYMGTQNTPVNHLHEGIRLSLIEKIKKKK 320 NDNDKEDTLYEKKSEIDSLPPYLIIHFLRFESKRIVDTSNTVSVVTAKICRKVSFPEIFDIYDFCSDRIKADLKISRNII 400 MNRKDIKTPIVQENKNEDDKMLETLTNQDDKNKEFVEIPNGEYELISVITHKGRNEESGHYIAWKKMRNRVNKNSEYDAN 480 GPRTKKNKSNNEPTWFKMDDDKVSLHNFSSLDLFGGCSDYNTAVLLLYKRKTISCTKDELNKYSV 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .................................P.............................................. 400 ................................................................................ 480 ................................................................. 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1242000 5 --MTIVK|VT 0.056 . PBANKA_1242000 9 IVKVTVK|WK 0.064 . PBANKA_1242000 11 KVTVKWK|TN 0.061 . PBANKA_1242000 30 EPIALFK|EQ 0.067 . PBANKA_1242000 35 FKEQLWK|IT 0.064 . PBANKA_1242000 43 TSVPPEK|QK 0.060 . PBANKA_1242000 45 VPPEKQK|LM 0.067 . PBANKA_1242000 49 KQKLMYK|GL 0.072 . PBANKA_1242000 53 MYKGLIK|ND 0.055 . PBANKA_1242000 64 LHTLNIK|NN 0.062 . PBANKA_1242000 68 NIKNNDK|IM 0.056 . PBANKA_1242000 81 SELLAEK|PD 0.053 . PBANKA_1242000 84 LAEKPDK|IT 0.067 . PBANKA_1242000 93 FFEDLSK|ED 0.057 . PBANKA_1242000 96 DLSKEDK|EK 0.062 . PBANKA_1242000 98 SKEDKEK|LN 0.077 . PBANKA_1242000 103 EKLNEDK|NI 0.070 . PBANKA_1242000 142 EFLSNIK|KT 0.054 . PBANKA_1242000 143 FLSNIKK|TQ 0.098 . PBANKA_1242000 150 TQNFGFR|SN 0.217 . PBANKA_1242000 153 FGFRSNK|DI 0.116 . PBANKA_1242000 169 FSQTFGK|SS 0.101 . PBANKA_1242000 172 TFGKSSK|PY 0.067 . PBANKA_1242000 181 VPLELLK|AF 0.068 . PBANKA_1242000 184 ELLKAFR|DV 0.198 . PBANKA_1242000 189 FRDVFPK|FK 0.084 . PBANKA_1242000 191 DVFPKFK|TI 0.066 . PBANKA_1242000 196 FKTINIR|TK 0.085 . PBANKA_1242000 198 TINIRTK|QY 0.084 . PBANKA_1242000 223 NDHTESK|II 0.074 . PBANKA_1242000 227 ESKIIDK|LF 0.065 . PBANKA_1242000 232 DKLFSFK|II 0.081 . PBANKA_1242000 236 SFKIIGK|IK 0.065 . PBANKA_1242000 238 KIIGKIK|CV 0.088 . PBANKA_1242000 251 QDDEPNK|QK 0.065 . PBANKA_1242000 253 DEPNKQK|ES 0.069 . PBANKA_1242000 257 KQKESQK|NE 0.065 . PBANKA_1242000 263 KNENSQK|PE 0.074 . PBANKA_1242000 268 QKPESDK|NN 0.061 . PBANKA_1242000 286 FELTQEK|HN 0.056 . PBANKA_1242000 289 TQEKHNK|LI 0.089 . PBANKA_1242000 309 HLHEGIR|LS 0.071 . PBANKA_1242000 315 RLSLIEK|IK 0.064 . PBANKA_1242000 317 SLIEKIK|KK 0.061 . PBANKA_1242000 318 LIEKIKK|KK 0.083 . PBANKA_1242000 319 IEKIKKK|KN 0.101 . PBANKA_1242000 320 EKIKKKK|ND 0.153 . PBANKA_1242000 325 KKNDNDK|ED 0.068 . PBANKA_1242000 332 EDTLYEK|KS 0.054 . PBANKA_1242000 333 DTLYEKK|SE 0.109 . PBANKA_1242000 349 LIIHFLR|FE 0.122 . PBANKA_1242000 353 FLRFESK|RI 0.066 . PBANKA_1242000 354 LRFESKR|IV 0.502 *ProP* PBANKA_1242000 368 VSVVTAK|IC 0.069 . PBANKA_1242000 371 VTAKICR|KV 0.114 . PBANKA_1242000 372 TAKICRK|VS 0.092 . PBANKA_1242000 388 YDFCSDR|IK 0.073 . PBANKA_1242000 390 FCSDRIK|AD 0.063 . PBANKA_1242000 394 RIKADLK|IS 0.065 . PBANKA_1242000 397 ADLKISR|NI 0.089 . PBANKA_1242000 403 RNIIMNR|KD 0.083 . PBANKA_1242000 404 NIIMNRK|DI 0.095 . PBANKA_1242000 407 MNRKDIK|TP 0.071 . PBANKA_1242000 415 PIVQENK|NE 0.058 . PBANKA_1242000 420 NKNEDDK|ML 0.074 . PBANKA_1242000 431 LTNQDDK|NK 0.068 . PBANKA_1242000 433 NQDDKNK|EF 0.064 . PBANKA_1242000 452 ISVITHK|GR 0.067 . PBANKA_1242000 454 VITHKGR|NE 0.090 . PBANKA_1242000 465 GHYIAWK|KM 0.061 . PBANKA_1242000 466 HYIAWKK|MR 0.093 . PBANKA_1242000 468 IAWKKMR|NR 0.095 . PBANKA_1242000 470 WKKMRNR|VN 0.097 . PBANKA_1242000 473 MRNRVNK|NS 0.229 . PBANKA_1242000 483 YDANGPR|TK 0.074 . PBANKA_1242000 485 ANGPRTK|KN 0.059 . PBANKA_1242000 486 NGPRTKK|NK 0.331 . PBANKA_1242000 488 PRTKKNK|SN 0.092 . PBANKA_1242000 497 NEPTWFK|MD 0.067 . PBANKA_1242000 502 FKMDDDK|VS 0.061 . PBANKA_1242000 529 AVLLLYK|RK 0.051 . PBANKA_1242000 530 VLLLYKR|KT 0.112 . PBANKA_1242000 531 LLLYKRK|TI 0.091 . PBANKA_1242000 537 KTISCTK|DE 0.057 . PBANKA_1242000 542 TKDELNK|YS 0.062 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1242000 ATGACAATAGTTAAGGTAACAGTAAAATGGAAAACAAATATTTACAATGATCTAGAGCTC AATATAAATGAGCCAATAGCATTGTTTAAAGAGCAGCTATGGAAAATAACTTCTGTTCCT CCAGAAAAACAAAAACTAATGTATAAAGGGTTAATAAAAAATGACACCAATTTGCATACA TTAAACATAAAAAATAATGACAAAATTATGTTAGTAGGATCTTCAGAATTATTGGCTGAA AAACCTGATAAAATTACATTTTTTGAAGATTTATCAAAAGAAGATAAAGAAAAATTAAAT GAAGATAAAAATATTATTTTCGAAGAACAAGGTATAGTAAATTTAGGAAATACTTGTTAT TTTAATGCAGTTTTGCAATTTTTGACTTCTTTTAATGATTTAGGAGAATTTTTAAGTAAT ATAAAAAAAACACAAAATTTTGGATTTAGATCAAATAAAGATATTTTATTCGATTGCTAT ATACATTTTTCTCAAACTTTTGGAAAATCATCGAAGCCATATGTTCCCTTAGAGTTATTA AAAGCCTTTAGAGATGTTTTCCCAAAATTTAAAACTATTAATATAAGAACAAAACAATAT GCACAACAAGATGCAGAAGAATGTATGAATGCTATTCTTACCTCATTAAATGATCATACA GAATCGAAAATTATTGATAAGCTTTTTTCATTTAAAATAATTGGAAAAATTAAATGTGTA GAACAAAATAGTCAAGATGATGAACCTAATAAACAAAAAGAGTCACAAAAAAATGAAAAT TCACAAAAACCAGAATCAGACAAAAATAATCCAAGTCAAAATGAAGAAAATGACCATTTT GAATTAACACAAGAAAAACACAACAAATTAATTTGTTATATGGGGACGCAAAATACCCCA GTAAATCATCTTCATGAAGGTATTAGATTATCATTAATTGAAAAAATAAAAAAAAAAAAA AACGACAATGATAAAGAAGATACATTATATGAAAAAAAATCAGAAATAGATTCATTACCT CCTTATTTAATTATACATTTTTTACGGTTTGAATCAAAACGAATTGTAGATACAAGTAAT ACGGTTTCTGTTGTTACTGCCAAAATATGTAGAAAGGTTTCCTTTCCAGAAATTTTTGAT ATTTATGATTTTTGCTCTGATAGGATAAAGGCTGATTTAAAAATTTCTAGAAATATTATT ATGAACAGAAAGGATATTAAAACACCCATTGTTCAGGAAAATAAAAATGAAGACGATAAA ATGTTGGAAACTTTGACTAACCAGGATGATAAAAACAAAGAATTTGTTGAAATCCCAAAC GGAGAGTATGAACTAATTTCAGTTATCACACATAAAGGAAGAAATGAAGAAAGTGGACAT TATATTGCATGGAAAAAAATGCGAAATCGTGTAAATAAAAATTCAGAGTATGATGCTAAT GGCCCAAGAACTAAAAAAAATAAAAGTAATAATGAACCAACATGGTTTAAAATGGATGAT GATAAAGTAAGTCTTCACAATTTTTCATCTCTTGATTTATTTGGAGGATGTAGTGATTAC AATACAGCTGTTTTGTTATTATACAAAAGGAAGACAATTTCTTGTACAAAAGACGAATTA AACAAATACTCTGTTTGA
  • Download Fasta

  • Fasta :-

    MTIVKVTVKWKTNIYNDLELNINEPIALFKEQLWKITSVPPEKQKLMYKGLIKNDTNLHT LNIKNNDKIMLVGSSELLAEKPDKITFFEDLSKEDKEKLNEDKNIIFEEQGIVNLGNTCY FNAVLQFLTSFNDLGEFLSNIKKTQNFGFRSNKDILFDCYIHFSQTFGKSSKPYVPLELL KAFRDVFPKFKTINIRTKQYAQQDAEECMNAILTSLNDHTESKIIDKLFSFKIIGKIKCV EQNSQDDEPNKQKESQKNENSQKPESDKNNPSQNEENDHFELTQEKHNKLICYMGTQNTP VNHLHEGIRLSLIEKIKKKKNDNDKEDTLYEKKSEIDSLPPYLIIHFLRFESKRIVDTSN TVSVVTAKICRKVSFPEIFDIYDFCSDRIKADLKISRNIIMNRKDIKTPIVQENKNEDDK MLETLTNQDDKNKEFVEIPNGEYELISVITHKGRNEESGHYIAWKKMRNRVNKNSEYDAN GPRTKKNKSNNEPTWFKMDDDKVSLHNFSSLDLFGGCSDYNTAVLLLYKRKTISCTKDEL NKYSV

  • title: Active Site
  • coordinates: N114,C119,H460,D500
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_1242000334 SYEKKSEIDS0.995unspPBANKA_1242000334 SYEKKSEIDS0.995unspPBANKA_1242000334 SYEKKSEIDS0.995unspPBANKA_1242000489 SKKNKSNNEP0.993unspPBANKA_124200092 SFEDLSKEDK0.997unspPBANKA_1242000266 SQKPESDKNN0.998unsp

PBANKA_124200      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India