PBANKA_1301400 | proteasome subunit alpha type-1, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1301400OTHER0.9999520.0000220.000026
No Results

  • Fasta :-

    >PBANKA_1301400 MYRNLYDTDNIIYSPEGRLYQVEYANEATKQGTCAVAIKSKEFVVVCGLKKCISKLSYHQ EKLFKIDDYIGVTMSGITSDAKVLTKYMRNECLTHKFLFDENMNIEKLVKKVADKYQKNT QKSSKRAFGVGLIISGYFNEPHIFETKSNGSYFEYEAISFGARSHASKTYLEKNLHLFEE SSLDDLVIHCLKALKCSLSSETELNADNTSLAIVGKDKPWEEMPYVELIDYLTKVNSEKR TEDSQENAQNIGN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1301400.fa Sequence name : PBANKA_1301400 Sequence length : 253 VALUES OF COMPUTED PARAMETERS Coef20 : 3.351 CoefTot : -0.191 ChDiff : -3 ZoneTo : 6 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.735 1.371 0.034 0.572 MesoH : -1.007 0.083 -0.513 0.144 MuHd_075 : 25.902 13.951 5.146 6.804 MuHd_095 : 26.535 15.461 5.371 6.772 MuHd_100 : 26.539 17.309 5.804 6.751 MuHd_105 : 23.751 16.944 5.783 5.088 Hmax_075 : 4.200 4.433 -1.277 3.197 Hmax_095 : -2.400 1.600 -2.886 2.188 Hmax_100 : 8.600 8.900 0.179 3.830 Hmax_105 : 0.400 3.100 -1.493 2.570 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6846 0.3154 DFMC : 0.8274 0.1726
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 253 PBANKA_1301400 MYRNLYDTDNIIYSPEGRLYQVEYANEATKQGTCAVAIKSKEFVVVCGLKKCISKLSYHQEKLFKIDDYIGVTMSGITSD 80 AKVLTKYMRNECLTHKFLFDENMNIEKLVKKVADKYQKNTQKSSKRAFGVGLIISGYFNEPHIFETKSNGSYFEYEAISF 160 GARSHASKTYLEKNLHLFEESSLDDLVIHCLKALKCSLSSETELNADNTSLAIVGKDKPWEEMPYVELIDYLTKVNSEKR 240 TEDSQENAQNIGN 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ............. 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1301400 3 ----MYR|NL 0.090 . PBANKA_1301400 18 IYSPEGR|LY 0.090 . PBANKA_1301400 30 YANEATK|QG 0.064 . PBANKA_1301400 39 TCAVAIK|SK 0.099 . PBANKA_1301400 41 AVAIKSK|EF 0.061 . PBANKA_1301400 50 VVVCGLK|KC 0.057 . PBANKA_1301400 51 VVCGLKK|CI 0.090 . PBANKA_1301400 55 LKKCISK|LS 0.069 . PBANKA_1301400 62 LSYHQEK|LF 0.062 . PBANKA_1301400 65 HQEKLFK|ID 0.073 . PBANKA_1301400 82 GITSDAK|VL 0.062 . PBANKA_1301400 86 DAKVLTK|YM 0.065 . PBANKA_1301400 89 VLTKYMR|NE 0.071 . PBANKA_1301400 96 NECLTHK|FL 0.073 . PBANKA_1301400 107 ENMNIEK|LV 0.070 . PBANKA_1301400 110 NIEKLVK|KV 0.067 . PBANKA_1301400 111 IEKLVKK|VA 0.146 . PBANKA_1301400 115 VKKVADK|YQ 0.064 . PBANKA_1301400 118 VADKYQK|NT 0.058 . PBANKA_1301400 122 YQKNTQK|SS 0.085 . PBANKA_1301400 125 NTQKSSK|RA 0.081 . PBANKA_1301400 126 TQKSSKR|AF 0.336 . PBANKA_1301400 147 PHIFETK|SN 0.088 . PBANKA_1301400 163 AISFGAR|SH 0.122 . PBANKA_1301400 168 ARSHASK|TY 0.080 . PBANKA_1301400 173 SKTYLEK|NL 0.067 . PBANKA_1301400 192 LVIHCLK|AL 0.062 . PBANKA_1301400 195 HCLKALK|CS 0.057 . PBANKA_1301400 216 SLAIVGK|DK 0.087 . PBANKA_1301400 218 AIVGKDK|PW 0.070 . PBANKA_1301400 234 LIDYLTK|VN 0.061 . PBANKA_1301400 239 TKVNSEK|RT 0.084 . PBANKA_1301400 240 KVNSEKR|TE 0.252 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1301400 ATGTATAGAAATTTGTATGATACAGACAATATTATTTATTCTCCTGAAGGGAGGTTATAC CAAGTAGAATATGCAAATGAAGCAACAAAACAAGGAACTTGTGCAGTGGCTATAAAATCT AAGGAGTTTGTGGTAGTTTGTGGTTTGAAGAAATGTATTAGTAAACTTTCTTATCATCAA GAAAAGCTATTTAAAATAGATGACTATATAGGTGTAACCATGAGTGGCATAACTTCGGAT GCCAAAGTATTGACCAAATATATGAGAAATGAATGCTTAACTCATAAATTTTTATTTGAT GAAAATATGAATATAGAAAAATTAGTTAAAAAAGTAGCAGATAAATATCAAAAAAATACC CAAAAAAGTAGTAAAAGAGCTTTTGGTGTTGGATTAATAATATCTGGGTATTTTAATGAA CCACATATTTTTGAAACCAAATCAAATGGATCTTATTTTGAATATGAGGCAATATCCTTT GGTGCGAGATCTCATGCATCAAAAACTTATCTAGAAAAGAATTTACATTTATTTGAGGAA TCGTCATTAGATGATTTGGTTATACACTGTTTAAAAGCTTTGAAATGCTCTCTTTCTAGT GAAACCGAACTAAATGCTGATAACACGTCTCTAGCTATTGTTGGAAAGGATAAACCATGG GAAGAAATGCCATATGTCGAATTGATTGATTATTTGACAAAGGTAAATAGTGAAAAAAGG ACTGAAGATAGTCAGGAGAATGCTCAAAACATTGGAAACTAA
  • Download Fasta

  • Fasta :-

    MYRNLYDTDNIIYSPEGRLYQVEYANEATKQGTCAVAIKSKEFVVVCGLKKCISKLSYHQ EKLFKIDDYIGVTMSGITSDAKVLTKYMRNECLTHKFLFDENMNIEKLVKKVADKYQKNT QKSSKRAFGVGLIISGYFNEPHIFETKSNGSYFEYEAISFGARSHASKTYLEKNLHLFEE SSLDDLVIHCLKALKCSLSSETELNADNTSLAIVGKDKPWEEMPYVELIDYLTKVNSEKR TEDSQENAQNIGN

  • title: active site
  • coordinates: T33,L49,K51,K62,A162
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_1301400237 STKVNSEKRT0.996unspPBANKA_1301400237 STKVNSEKRT0.996unspPBANKA_1301400237 STKVNSEKRT0.996unspPBANKA_1301400244 SRTEDSQENA0.99unspPBANKA_1301400123 SNTQKSSKRA0.997unspPBANKA_1301400151 SKSNGSYFEY0.994unsp

PBANKA_130140      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India