PBANKA_1328300 | ATP-dependent zinc metalloprotease FTSH, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1328300OTHER0.9296540.0009940.069352
No Results

  • Fasta :-

    >PBANKA_1328300 MLLLRNIVVLDLKRSNFLYIKNIPDVKKLLNSKRCFSLLNTERLDRLKREIRYKPNDNFL ILQFYKEANLHNPNEVIKHYENSSYIKNESITKEYIKALVYTNKLKYTNLNNIKYDSEPN FYRRSMEDGNNNINGINPEPSNIYETHNINIDPNYSNMSRSGHTNNYNDKKNGTHSEVFS LQIDPKIPLKVSLINANKKGLWGILKSTIGFLILVAAASVYLEGVSQNVQKGIGVSNKKV VPVENVKVTLADVKGCDEVKQELQEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLI ARAIAGEANVPFIQASGSEFEEMFVGVGARRIRELFQTAKKHAPCIVFIDEIDAVGSKRS NRDNSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVPLPDI NGRYEILRMYSNKIILSRDVDLNVLARRTVGMTGADLKNILNIAAIKCSVEGKKSVDMNS IEQAFDRVVVGLQRKSPLSDEEKNITAYHEGGHTLVNFYTEGSDPVHKATIMPRGMSLGV TWKIPVTDKYSQKIKDIQSEIDVLMGGMVSEEIIFGKNNVTTGCSSDLQRATHIAQSLVM NYGVGINEENISMFLQDKKNISEDMKIKIDKSIQRILLDSYNRAKKVLNQHIDELHRVAS ALVEFETLTNDEIKLAMQGKNDQIRKNREIKQKEFNLKDSRIS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1328300.fa Sequence name : PBANKA_1328300 Sequence length : 703 VALUES OF COMPUTED PARAMETERS Coef20 : 4.683 CoefTot : -0.160 ChDiff : 14 ZoneTo : 41 KR : 8 DE : 2 CleavSite : 44 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.582 2.053 0.269 0.751 MesoH : -0.447 0.547 -0.382 0.260 MuHd_075 : 28.979 24.468 6.679 8.051 MuHd_095 : 30.589 16.132 8.420 6.580 MuHd_100 : 33.819 18.234 9.377 7.022 MuHd_105 : 37.309 23.348 10.868 8.344 Hmax_075 : 10.325 19.950 1.413 5.775 Hmax_095 : 7.438 12.950 -2.016 4.987 Hmax_100 : -1.200 16.400 0.445 2.980 Hmax_105 : 7.117 15.100 1.064 5.227 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3144 0.6856 DFMC : 0.5511 0.4489
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 703 PBANKA_1328300 MLLLRNIVVLDLKRSNFLYIKNIPDVKKLLNSKRCFSLLNTERLDRLKREIRYKPNDNFLILQFYKEANLHNPNEVIKHY 80 ENSSYIKNESITKEYIKALVYTNKLKYTNLNNIKYDSEPNFYRRSMEDGNNNINGINPEPSNIYETHNINIDPNYSNMSR 160 SGHTNNYNDKKNGTHSEVFSLQIDPKIPLKVSLINANKKGLWGILKSTIGFLILVAAASVYLEGVSQNVQKGIGVSNKKV 240 VPVENVKVTLADVKGCDEVKQELQEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLIARAIAGEANVPFIQASGSEF 320 EEMFVGVGARRIRELFQTAKKHAPCIVFIDEIDAVGSKRSNRDNSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLD 400 KALVRPGRLDKTIVVPLPDINGRYEILRMYSNKIILSRDVDLNVLARRTVGMTGADLKNILNIAAIKCSVEGKKSVDMNS 480 IEQAFDRVVVGLQRKSPLSDEEKNITAYHEGGHTLVNFYTEGSDPVHKATIMPRGMSLGVTWKIPVTDKYSQKIKDIQSE 560 IDVLMGGMVSEEIIFGKNNVTTGCSSDLQRATHIAQSLVMNYGVGINEENISMFLQDKKNISEDMKIKIDKSIQRILLDS 640 YNRAKKVLNQHIDELHRVASALVEFETLTNDEIKLAMQGKNDQIRKNREIKQKEFNLKDSRIS 720 ................................................P............................... 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 .........................................P...................................... 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ............................................................... 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 2 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1328300 5 --MLLLR|NI 0.064 . PBANKA_1328300 13 IVVLDLK|RS 0.050 . PBANKA_1328300 14 VVLDLKR|SN 0.150 . PBANKA_1328300 21 SNFLYIK|NI 0.063 . PBANKA_1328300 27 KNIPDVK|KL 0.058 . PBANKA_1328300 28 NIPDVKK|LL 0.093 . PBANKA_1328300 33 KKLLNSK|RC 0.059 . PBANKA_1328300 34 KLLNSKR|CF 0.158 . PBANKA_1328300 43 SLLNTER|LD 0.074 . PBANKA_1328300 46 NTERLDR|LK 0.145 . PBANKA_1328300 48 ERLDRLK|RE 0.058 . PBANKA_1328300 49 RLDRLKR|EI 0.523 *ProP* PBANKA_1328300 52 RLKREIR|YK 0.176 . PBANKA_1328300 54 KREIRYK|PN 0.074 . PBANKA_1328300 66 LILQFYK|EA 0.065 . PBANKA_1328300 78 NPNEVIK|HY 0.076 . PBANKA_1328300 87 ENSSYIK|NE 0.066 . PBANKA_1328300 93 KNESITK|EY 0.064 . PBANKA_1328300 97 ITKEYIK|AL 0.059 . PBANKA_1328300 104 ALVYTNK|LK 0.069 . PBANKA_1328300 106 VYTNKLK|YT 0.061 . PBANKA_1328300 114 TNLNNIK|YD 0.063 . PBANKA_1328300 123 SEPNFYR|RS 0.084 . PBANKA_1328300 124 EPNFYRR|SM 0.441 . PBANKA_1328300 160 NYSNMSR|SG 0.134 . PBANKA_1328300 170 TNNYNDK|KN 0.080 . PBANKA_1328300 171 NNYNDKK|NG 0.108 . PBANKA_1328300 186 SLQIDPK|IP 0.061 . PBANKA_1328300 190 DPKIPLK|VS 0.054 . PBANKA_1328300 198 SLINANK|KG 0.057 . PBANKA_1328300 199 LINANKK|GL 0.165 . PBANKA_1328300 206 GLWGILK|ST 0.079 . PBANKA_1328300 231 VSQNVQK|GI 0.099 . PBANKA_1328300 238 GIGVSNK|KV 0.110 . PBANKA_1328300 239 IGVSNKK|VV 0.091 . PBANKA_1328300 247 VPVENVK|VT 0.058 . PBANKA_1328300 254 VTLADVK|GC 0.062 . PBANKA_1328300 260 KGCDEVK|QE 0.060 . PBANKA_1328300 271 EIIDYLK|NS 0.057 . PBANKA_1328300 275 YLKNSDK|FT 0.072 . PBANKA_1328300 278 NSDKFTK|IG 0.065 . PBANKA_1328300 282 FTKIGAK|LP 0.060 . PBANKA_1328300 285 IGAKLPK|GI 0.075 . PBANKA_1328300 297 GEPGTGK|TL 0.058 . PBANKA_1328300 302 GKTLIAR|AI 0.097 . PBANKA_1328300 330 FVGVGAR|RI 0.103 . PBANKA_1328300 331 VGVGARR|IR 0.096 . PBANKA_1328300 333 VGARRIR|EL 0.253 . PBANKA_1328300 340 ELFQTAK|KH 0.061 . PBANKA_1328300 341 LFQTAKK|HA 0.097 . PBANKA_1328300 358 IDAVGSK|RS 0.057 . PBANKA_1328300 359 DAVGSKR|SN 0.253 . PBANKA_1328300 362 GSKRSNR|DN 0.663 *ProP* PBANKA_1328300 368 RDNSAVR|MT 0.105 . PBANKA_1328300 401 FPQSLDK|AL 0.061 . PBANKA_1328300 405 LDKALVR|PG 0.073 . PBANKA_1328300 408 ALVRPGR|LD 0.195 . PBANKA_1328300 411 RPGRLDK|TI 0.134 . PBANKA_1328300 423 LPDINGR|YE 0.079 . PBANKA_1328300 428 GRYEILR|MY 0.119 . PBANKA_1328300 433 LRMYSNK|II 0.072 . PBANKA_1328300 438 NKIILSR|DV 0.147 . PBANKA_1328300 447 DLNVLAR|RT 0.088 . PBANKA_1328300 448 LNVLARR|TV 0.229 . PBANKA_1328300 458 MTGADLK|NI 0.060 . PBANKA_1328300 467 LNIAAIK|CS 0.063 . PBANKA_1328300 473 KCSVEGK|KS 0.073 . PBANKA_1328300 474 CSVEGKK|SV 0.199 . PBANKA_1328300 487 IEQAFDR|VV 0.121 . PBANKA_1328300 494 VVVGLQR|KS 0.062 . PBANKA_1328300 495 VVGLQRK|SP 0.081 . PBANKA_1328300 503 PLSDEEK|NI 0.073 . PBANKA_1328300 528 GSDPVHK|AT 0.070 . PBANKA_1328300 534 KATIMPR|GM 0.113 . PBANKA_1328300 543 SLGVTWK|IP 0.060 . PBANKA_1328300 549 KIPVTDK|YS 0.068 . PBANKA_1328300 553 TDKYSQK|IK 0.072 . PBANKA_1328300 555 KYSQKIK|DI 0.106 . PBANKA_1328300 577 EEIIFGK|NN 0.065 . PBANKA_1328300 590 CSSDLQR|AT 0.147 . PBANKA_1328300 618 SMFLQDK|KN 0.061 . PBANKA_1328300 619 MFLQDKK|NI 0.097 . PBANKA_1328300 626 NISEDMK|IK 0.067 . PBANKA_1328300 628 SEDMKIK|ID 0.066 . PBANKA_1328300 631 MKIKIDK|SI 0.110 . PBANKA_1328300 635 IDKSIQR|IL 0.086 . PBANKA_1328300 643 LLDSYNR|AK 0.070 . PBANKA_1328300 645 DSYNRAK|KV 0.077 . PBANKA_1328300 646 SYNRAKK|VL 0.349 . PBANKA_1328300 657 HIDELHR|VA 0.088 . PBANKA_1328300 674 LTNDEIK|LA 0.085 . PBANKA_1328300 680 KLAMQGK|ND 0.066 . PBANKA_1328300 685 GKNDQIR|KN 0.108 . PBANKA_1328300 686 KNDQIRK|NR 0.089 . PBANKA_1328300 688 DQIRKNR|EI 0.450 . PBANKA_1328300 691 RKNREIK|QK 0.205 . PBANKA_1328300 693 NREIKQK|EF 0.069 . PBANKA_1328300 698 QKEFNLK|DS 0.077 . PBANKA_1328300 701 FNLKDSR|IS 0.075 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1328300 ATGTTACTCCTACGTAATATTGTTGTACTAGATTTGAAAAGGAGTAATTTTCTATATATA AAAAATATCCCAGATGTAAAAAAATTATTAAATAGCAAAAGATGCTTTAGTCTACTAAAT ACAGAAAGGTTAGATAGACTGAAAAGAGAAATTCGCTATAAGCCTAATGATAATTTTTTA ATATTACAATTTTATAAAGAAGCAAATTTACATAATCCGAATGAAGTTATAAAACATTAT GAAAACAGTAGCTATATTAAAAATGAAAGCATAACAAAAGAATATATAAAAGCACTAGTT TATACTAATAAACTAAAATATACCAATCTTAATAACATAAAATATGATAGCGAACCTAAT TTTTATAGAAGATCGATGGAGGATGGAAATAATAATATAAACGGGATAAACCCTGAACCC TCAAATATATATGAAACGCATAATATAAATATAGACCCTAATTATAGTAATATGTCCCGT TCAGGGCATACAAATAATTATAATGATAAAAAAAATGGTACTCATTCTGAAGTTTTTAGT TTACAAATTGACCCAAAAATACCTTTAAAGGTATCCTTAATAAATGCAAATAAAAAAGGT TTGTGGGGGATACTTAAATCGACTATTGGCTTCTTAATTTTAGTTGCAGCAGCAAGCGTA TATTTAGAGGGGGTATCACAAAATGTTCAAAAGGGTATAGGTGTATCAAATAAAAAAGTA GTTCCAGTAGAGAATGTAAAGGTAACTTTAGCAGATGTAAAAGGGTGTGACGAAGTAAAA CAAGAACTTCAAGAAATAATTGATTATTTAAAAAATTCAGATAAATTTACTAAAATTGGT GCAAAATTGCCCAAAGGTATATTATTATCGGGTGAACCTGGAACAGGAAAAACATTAATT GCTAGGGCTATTGCAGGAGAAGCAAATGTACCTTTTATCCAAGCATCTGGTTCAGAATTT GAAGAAATGTTTGTTGGTGTGGGTGCAAGAAGAATAAGAGAGCTTTTTCAAACCGCAAAA AAGCATGCACCTTGCATTGTTTTTATTGATGAAATAGATGCAGTTGGTTCTAAAAGAAGT AATAGAGATAATAGCGCAGTTAGAATGACACTTAATCAATTATTAGTTGAATTAGATGGC TTTGAACAAAATGAAGGAATTGTCGTAATATGTGCTACCAATTTTCCACAAAGTTTAGAT AAAGCACTAGTTAGACCTGGCAGATTAGATAAAACTATTGTAGTACCATTACCTGATATC AATGGTAGATATGAAATTTTAAGAATGTATAGTAACAAAATCATCTTATCAAGAGATGTC GATTTAAATGTTTTAGCTAGAAGAACTGTTGGTATGACGGGTGCAGATTTAAAAAATATA TTAAATATAGCAGCTATTAAATGCTCAGTAGAAGGGAAAAAATCAGTTGATATGAATTCT ATTGAACAAGCTTTTGATAGAGTTGTTGTTGGATTACAAAGAAAATCACCATTAAGTGAC GAAGAAAAAAATATAACAGCATATCATGAAGGAGGACATACATTAGTTAATTTTTACACA GAAGGCTCAGACCCTGTTCATAAAGCTACTATTATGCCAAGAGGTATGTCTTTAGGCGTT ACTTGGAAAATACCAGTTACCGATAAATATAGTCAAAAAATTAAAGACATTCAAAGTGAA ATTGATGTGCTAATGGGGGGTATGGTATCAGAAGAAATTATTTTTGGAAAAAATAATGTA ACAACTGGGTGTTCAAGTGATTTGCAAAGAGCTACACATATTGCTCAATCACTTGTGATG AACTATGGAGTCGGTATAAACGAAGAAAATATATCTATGTTTTTACAAGATAAAAAAAAT ATAAGTGAAGATATGAAAATTAAAATAGATAAATCTATTCAAAGAATACTGTTAGATTCT TATAATAGAGCAAAAAAGGTTTTAAATCAACATATTGATGAATTACACAGGGTTGCTTCT GCATTAGTCGAATTCGAAACCTTAACAAATGACGAAATTAAATTGGCCATGCAAGGAAAA AATGATCAAATAAGAAAAAATAGAGAAATAAAACAAAAGGAATTTAATTTGAAGGACAGT AGAATTTCATAA
  • Download Fasta

  • Fasta :-

    MLLLRNIVVLDLKRSNFLYIKNIPDVKKLLNSKRCFSLLNTERLDRLKREIRYKPNDNFL ILQFYKEANLHNPNEVIKHYENSSYIKNESITKEYIKALVYTNKLKYTNLNNIKYDSEPN FYRRSMEDGNNNINGINPEPSNIYETHNINIDPNYSNMSRSGHTNNYNDKKNGTHSEVFS LQIDPKIPLKVSLINANKKGLWGILKSTIGFLILVAAASVYLEGVSQNVQKGIGVSNKKV VPVENVKVTLADVKGCDEVKQELQEIIDYLKNSDKFTKIGAKLPKGILLSGEPGTGKTLI ARAIAGEANVPFIQASGSEFEEMFVGVGARRIRELFQTAKKHAPCIVFIDEIDAVGSKRS NRDNSAVRMTLNQLLVELDGFEQNEGIVVICATNFPQSLDKALVRPGRLDKTIVVPLPDI NGRYEILRMYSNKIILSRDVDLNVLARRTVGMTGADLKNILNIAAIKCSVEGKKSVDMNS IEQAFDRVVVGLQRKSPLSDEEKNITAYHEGGHTLVNFYTEGSDPVHKATIMPRGMSLGV TWKIPVTDKYSQKIKDIQSEIDVLMGGMVSEEIIFGKNNVTTGCSSDLQRATHIAQSLVM NYGVGINEENISMFLQDKKNISEDMKIKIDKSIQRILLDSYNRAKKVLNQHIDELHRVAS ALVEFETLTNDEIKLAMQGKNDQIRKNREIKQKEFNLKDSRIS

  • title: ATP binding site
  • coordinates: E292,P293,G294,T295,G296,K297,T298,L299,D350,N394
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_1328300360 SGSKRSNRDN0.992unspPBANKA_1328300360 SGSKRSNRDN0.992unspPBANKA_1328300360 SGSKRSNRDN0.992unspPBANKA_1328300496 SLQRKSPLSD0.994unspPBANKA_1328300499 SKSPLSDEEK0.997unspPBANKA_1328300125 SFYRRSMEDG0.992unspPBANKA_1328300273 SYLKNSDKFT0.992unsp

PBANKA_132830      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India