PBANKA_1329100 | plasmepsin VIII

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1329100SP0.0026230.9968420.000535CS pos: 21-22. VKS-LT. Pr: 0.7386
No Results

  • Fasta :-

    >PBANKA_1329100 MNKFFVFPLLLILNSIVLVKSLTENLRVSRYSKPGVSTIILKGGYINRQFIGEISIGNPP QSFKVLFDTGSTNLWIPSKNCYAKACYNKKKYDYNISKNYRISSSKNPVNIFFGTGKVQI AYATDDIHLGSIKVRNQEFGIANYMSDDPFSDMQFDGLFGLGISEDIKRKGLIYDNIPRN SSRKNVFSIYYPKSVDDNGAITFGGYDKKYIEPNSNIDWFVVSSRKYWTIKMTGIKINGL FLEVCSGNIEGYCDAVIDTGTSSIAGPQNDLILLTKLLNPVKSCQNKTLLKNFSFVFSDE NGVEKEYELTSNDYIVNSFKVDPILKNPCNFAFMPINISSPNGYLYILGQVFLQKYYAIF EKDNMRIGLAKSI
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1329100.fa Sequence name : PBANKA_1329100 Sequence length : 373 VALUES OF COMPUTED PARAMETERS Coef20 : 4.480 CoefTot : -5.478 ChDiff : 10 ZoneTo : 124 KR : 17 DE : 4 CleavSite : 103 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.524 2.306 0.173 0.756 MesoH : -0.369 0.448 -0.322 0.241 MuHd_075 : 36.457 27.801 13.264 9.390 MuHd_095 : 33.331 21.983 10.053 8.361 MuHd_100 : 30.563 19.025 8.716 6.719 MuHd_105 : 41.295 23.180 10.165 8.698 Hmax_075 : 14.700 15.750 5.035 7.537 Hmax_095 : 13.125 13.475 3.401 5.478 Hmax_100 : 14.700 16.600 -2.760 5.120 Hmax_105 : 7.400 10.900 0.364 3.260 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.5229 0.4771 DFMC : 0.4581 0.5419 This protein is probably imported in mitochondria. f(Ser) = 0.1048 f(Arg) = 0.0323 CMi = 0.91036 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 373 PBANKA_1329100 MNKFFVFPLLLILNSIVLVKSLTENLRVSRYSKPGVSTIILKGGYINRQFIGEISIGNPPQSFKVLFDTGSTNLWIPSKN 80 CYAKACYNKKKYDYNISKNYRISSSKNPVNIFFGTGKVQIAYATDDIHLGSIKVRNQEFGIANYMSDDPFSDMQFDGLFG 160 LGISEDIKRKGLIYDNIPRNSSRKNVFSIYYPKSVDDNGAITFGGYDKKYIEPNSNIDWFVVSSRKYWTIKMTGIKINGL 240 FLEVCSGNIEGYCDAVIDTGTSSIAGPQNDLILLTKLLNPVKSCQNKTLLKNFSFVFSDENGVEKEYELTSNDYIVNSFK 320 VDPILKNPCNFAFMPINISSPNGYLYILGQVFLQKYYAIFEKDNMRIGLAKSI 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ..................................................... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1329100 3 ----MNK|FF 0.058 . PBANKA_1329100 20 NSIVLVK|SL 0.089 . PBANKA_1329100 27 SLTENLR|VS 0.075 . PBANKA_1329100 30 ENLRVSR|YS 0.306 . PBANKA_1329100 33 RVSRYSK|PG 0.100 . PBANKA_1329100 42 VSTIILK|GG 0.059 . PBANKA_1329100 48 KGGYINR|QF 0.099 . PBANKA_1329100 64 NPPQSFK|VL 0.071 . PBANKA_1329100 79 NLWIPSK|NC 0.061 . PBANKA_1329100 84 SKNCYAK|AC 0.077 . PBANKA_1329100 89 AKACYNK|KK 0.066 . PBANKA_1329100 90 KACYNKK|KY 0.096 . PBANKA_1329100 91 ACYNKKK|YD 0.126 . PBANKA_1329100 98 YDYNISK|NY 0.059 . PBANKA_1329100 101 NISKNYR|IS 0.114 . PBANKA_1329100 106 YRISSSK|NP 0.064 . PBANKA_1329100 117 IFFGTGK|VQ 0.059 . PBANKA_1329100 133 IHLGSIK|VR 0.058 . PBANKA_1329100 135 LGSIKVR|NQ 0.137 . PBANKA_1329100 168 GISEDIK|RK 0.068 . PBANKA_1329100 169 ISEDIKR|KG 0.117 . PBANKA_1329100 170 SEDIKRK|GL 0.079 . PBANKA_1329100 179 IYDNIPR|NS 0.079 . PBANKA_1329100 183 IPRNSSR|KN 0.094 . PBANKA_1329100 184 PRNSSRK|NV 0.141 . PBANKA_1329100 193 FSIYYPK|SV 0.143 . PBANKA_1329100 208 TFGGYDK|KY 0.059 . PBANKA_1329100 209 FGGYDKK|YI 0.116 . PBANKA_1329100 225 WFVVSSR|KY 0.102 . PBANKA_1329100 226 FVVSSRK|YW 0.092 . PBANKA_1329100 231 RKYWTIK|MT 0.103 . PBANKA_1329100 236 IKMTGIK|IN 0.066 . PBANKA_1329100 276 DLILLTK|LL 0.064 . PBANKA_1329100 282 KLLNPVK|SC 0.068 . PBANKA_1329100 287 VKSCQNK|TL 0.075 . PBANKA_1329100 291 QNKTLLK|NF 0.065 . PBANKA_1329100 305 DENGVEK|EY 0.063 . PBANKA_1329100 320 YIVNSFK|VD 0.055 . PBANKA_1329100 326 KVDPILK|NP 0.053 . PBANKA_1329100 355 GQVFLQK|YY 0.072 . PBANKA_1329100 362 YYAIFEK|DN 0.078 . PBANKA_1329100 366 FEKDNMR|IG 0.069 . PBANKA_1329100 371 MRIGLAK|SI 0.121 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1329100 ATGAATAAATTTTTTGTCTTTCCTTTATTGTTAATTTTAAATTCCATTGTTCTTGTAAAG TCGTTAACAGAGAATTTACGGGTATCTAGATATAGTAAACCAGGAGTTTCAACAATAATA TTGAAAGGAGGTTACATTAATAGACAATTTATTGGGGAAATAAGCATTGGTAATCCTCCT CAATCATTTAAGGTTTTGTTTGACACTGGTAGTACAAATTTATGGATTCCTTCAAAAAAT TGTTATGCAAAAGCTTGTTATAATAAAAAAAAGTATGACTATAATATATCTAAAAATTAT AGAATATCTTCCTCCAAAAATCCTGTGAATATTTTTTTTGGAACGGGTAAAGTTCAGATT GCGTATGCTACCGATGATATACACCTAGGAAGTATTAAAGTTAGGAATCAGGAATTTGGA ATAGCAAATTATATGTCCGACGACCCTTTTTCTGATATGCAATTTGATGGGCTATTTGGA TTAGGCATTTCAGAGGATATAAAAAGAAAAGGGCTAATATATGACAATATACCAAGGAAT AGTTCTAGAAAAAATGTTTTCTCCATTTACTATCCTAAAAGCGTTGATGATAATGGGGCA ATTACATTTGGTGGATATGACAAAAAATATATTGAGCCGAATTCGAATATAGATTGGTTT GTTGTTTCGTCTAGAAAGTATTGGACCATAAAAATGACAGGAATAAAAATTAATGGTTTG TTTTTGGAAGTATGTTCAGGGAATATAGAAGGATATTGTGATGCTGTAATTGATACAGGA ACATCGAGTATTGCAGGACCCCAAAATGACTTAATATTATTAACTAAATTATTAAATCCT GTAAAATCATGCCAAAATAAAACACTATTAAAAAACTTTTCTTTCGTTTTTTCGGATGAA AATGGTGTAGAGAAAGAATATGAATTAACATCAAACGATTATATTGTTAATTCGTTTAAA GTTGACCCAATTTTAAAAAACCCATGCAATTTTGCATTTATGCCAATTAATATATCATCA CCTAATGGATATTTATATATTCTTGGTCAAGTATTTTTACAAAAATACTATGCAATATTT GAAAAGGACAATATGAGAATCGGCTTAGCTAAATCGATATAA
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  • Fasta :-

    MNKFFVFPLLLILNSIVLVKSLTENLRVSRYSKPGVSTIILKGGYINRQFIGEISIGNPP QSFKVLFDTGSTNLWIPSKNCYAKACYNKKKYDYNISKNYRISSSKNPVNIFFGTGKVQI AYATDDIHLGSIKVRNQEFGIANYMSDDPFSDMQFDGLFGLGISEDIKRKGLIYDNIPRN SSRKNVFSIYYPKSVDDNGAITFGGYDKKYIEPNSNIDWFVVSSRKYWTIKMTGIKINGL FLEVCSGNIEGYCDAVIDTGTSSIAGPQNDLILLTKLLNPVKSCQNKTLLKNFSFVFSDE NGVEKEYELTSNDYIVNSFKVDPILKNPCNFAFMPINISSPNGYLYILGQVFLQKYYAIF EKDNMRIGLAKSI

  • title: catalytic residue
  • coordinates: D68,D258
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_1329100182 SPRNSSRKNV0.995unspPBANKA_1329100182 SPRNSSRKNV0.995unspPBANKA_1329100182 SPRNSSRKNV0.995unspPBANKA_1329100194 SYYPKSVDDN0.991unspPBANKA_132910029 SNLRVSRYSK0.991unspPBANKA_1329100104 SYRISSSKNP0.992unsp

PBANKA_132910      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India