PBANKA_1358100 | rhomboid protease ROM6

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1358100OTHER0.6503160.0000170.349668
No Results

  • Fasta :-

    >PBANKA_1358100 MFNYYKYFRTNYFKYRFLHINTIKHFHPFTKVVSKIQENAIKKKEKNIKLKERIKLIIFS SFYFFACDYLYHVYKLKGNKKVEEGDAYTPKEKLLTGNTKKYENKYQNNEMIPNFIKWIN VFSRPEQTNKYMLQKDGPGISDKNNQRYDNNDDLICEQINNSNVDDESIYEIKINNIKKK KNEQNYKRDEFTVIRNQIFGYNMGNSIGGNTGKDPSQERNFKEIIENNLYRKNLLSGNNL FLIANGVIFLCWRLSDIARNQKFYNFMCRHFICSYENIKKKHYHTIFTASISHMTLPHFL FNMWAFHTITNTLLYPEIKEKKTNYYYFFNYKSNILEKKITNKDIINVCLLSSVMSTIPY ILLNRYAQLLGASGAIMGLVYILSVVKPNEIFVSVFPFPYLKLSALQLCHISILTNFIFL FYKKNNFSIAWSAHLFGLLGGAIYSYYQRKINNNYNYYPFIQLSIQNGYLDYTNTYRDLL DFIKTLKLQTISFFSLDHRNIQQITKQLYMIQYKKSQRRAKIHAMKINNLKQMEK
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1358100.fa Sequence name : PBANKA_1358100 Sequence length : 535 VALUES OF COMPUTED PARAMETERS Coef20 : 3.941 CoefTot : -2.373 ChDiff : 37 ZoneTo : 37 KR : 7 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.924 2.024 0.382 0.742 MesoH : 0.769 1.224 0.010 0.489 MuHd_075 : 28.972 20.404 8.878 6.476 MuHd_095 : 34.654 15.926 8.796 6.637 MuHd_100 : 36.464 19.763 10.461 7.230 MuHd_105 : 42.383 31.115 13.543 9.839 Hmax_075 : 16.800 11.900 1.674 6.310 Hmax_095 : 12.200 10.700 0.235 4.300 Hmax_100 : 13.900 14.600 0.995 5.550 Hmax_105 : 20.300 21.117 4.006 7.292 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0671 0.9329 DFMC : 0.1532 0.8468 This protein is probably imported in mitochondria. f(Ser) = 0.0270 f(Arg) = 0.0541 CMi = 0.18553 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 535 PBANKA_1358100 MFNYYKYFRTNYFKYRFLHINTIKHFHPFTKVVSKIQENAIKKKEKNIKLKERIKLIIFSSFYFFACDYLYHVYKLKGNK 80 KVEEGDAYTPKEKLLTGNTKKYENKYQNNEMIPNFIKWINVFSRPEQTNKYMLQKDGPGISDKNNQRYDNNDDLICEQIN 160 NSNVDDESIYEIKINNIKKKKNEQNYKRDEFTVIRNQIFGYNMGNSIGGNTGKDPSQERNFKEIIENNLYRKNLLSGNNL 240 FLIANGVIFLCWRLSDIARNQKFYNFMCRHFICSYENIKKKHYHTIFTASISHMTLPHFLFNMWAFHTITNTLLYPEIKE 320 KKTNYYYFFNYKSNILEKKITNKDIINVCLLSSVMSTIPYILLNRYAQLLGASGAIMGLVYILSVVKPNEIFVSVFPFPY 400 LKLSALQLCHISILTNFIFLFYKKNNFSIAWSAHLFGLLGGAIYSYYQRKINNNYNYYPFIQLSIQNGYLDYTNTYRDLL 480 DFIKTLKLQTISFFSLDHRNIQQITKQLYMIQYKKSQRRAKIHAMKINNLKQMEK 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ....................................................... 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1358100 6 -MFNYYK|YF 0.064 . PBANKA_1358100 9 NYYKYFR|TN 0.077 . PBANKA_1358100 14 FRTNYFK|YR 0.068 . PBANKA_1358100 16 TNYFKYR|FL 0.149 . PBANKA_1358100 24 LHINTIK|HF 0.069 . PBANKA_1358100 31 HFHPFTK|VV 0.123 . PBANKA_1358100 35 FTKVVSK|IQ 0.071 . PBANKA_1358100 42 IQENAIK|KK 0.068 . PBANKA_1358100 43 QENAIKK|KE 0.078 . PBANKA_1358100 44 ENAIKKK|EK 0.132 . PBANKA_1358100 46 AIKKKEK|NI 0.081 . PBANKA_1358100 49 KKEKNIK|LK 0.069 . PBANKA_1358100 51 EKNIKLK|ER 0.069 . PBANKA_1358100 53 NIKLKER|IK 0.106 . PBANKA_1358100 55 KLKERIK|LI 0.061 . PBANKA_1358100 75 YLYHVYK|LK 0.073 . PBANKA_1358100 77 YHVYKLK|GN 0.077 . PBANKA_1358100 80 YKLKGNK|KV 0.075 . PBANKA_1358100 81 KLKGNKK|VE 0.088 . PBANKA_1358100 91 GDAYTPK|EK 0.066 . PBANKA_1358100 93 AYTPKEK|LL 0.058 . PBANKA_1358100 100 LLTGNTK|KY 0.064 . PBANKA_1358100 101 LTGNTKK|YE 0.116 . PBANKA_1358100 105 TKKYENK|YQ 0.069 . PBANKA_1358100 117 MIPNFIK|WI 0.062 . PBANKA_1358100 124 WINVFSR|PE 0.102 . PBANKA_1358100 130 RPEQTNK|YM 0.067 . PBANKA_1358100 135 NKYMLQK|DG 0.066 . PBANKA_1358100 143 GPGISDK|NN 0.066 . PBANKA_1358100 147 SDKNNQR|YD 0.079 . PBANKA_1358100 173 ESIYEIK|IN 0.061 . PBANKA_1358100 178 IKINNIK|KK 0.059 . PBANKA_1358100 179 KINNIKK|KK 0.102 . PBANKA_1358100 180 INNIKKK|KN 0.185 . PBANKA_1358100 181 NNIKKKK|NE 0.094 . PBANKA_1358100 187 KNEQNYK|RD 0.058 . PBANKA_1358100 188 NEQNYKR|DE 0.257 . PBANKA_1358100 195 DEFTVIR|NQ 0.079 . PBANKA_1358100 213 IGGNTGK|DP 0.088 . PBANKA_1358100 219 KDPSQER|NF 0.085 . PBANKA_1358100 222 SQERNFK|EI 0.120 . PBANKA_1358100 231 IENNLYR|KN 0.091 . PBANKA_1358100 232 ENNLYRK|NL 0.082 . PBANKA_1358100 253 VIFLCWR|LS 0.086 . PBANKA_1358100 259 RLSDIAR|NQ 0.100 . PBANKA_1358100 262 DIARNQK|FY 0.120 . PBANKA_1358100 269 FYNFMCR|HF 0.096 . PBANKA_1358100 279 CSYENIK|KK 0.057 . PBANKA_1358100 280 SYENIKK|KH 0.087 . PBANKA_1358100 281 YENIKKK|HY 0.190 . PBANKA_1358100 319 LLYPEIK|EK 0.061 . PBANKA_1358100 321 YPEIKEK|KT 0.064 . PBANKA_1358100 322 PEIKEKK|TN 0.090 . PBANKA_1358100 332 YYFFNYK|SN 0.069 . PBANKA_1358100 338 KSNILEK|KI 0.069 . PBANKA_1358100 339 SNILEKK|IT 0.110 . PBANKA_1358100 343 EKKITNK|DI 0.076 . PBANKA_1358100 365 PYILLNR|YA 0.080 . PBANKA_1358100 387 YILSVVK|PN 0.059 . PBANKA_1358100 402 FPFPYLK|LS 0.058 . PBANKA_1358100 423 FIFLFYK|KN 0.061 . PBANKA_1358100 424 IFLFYKK|NN 0.082 . PBANKA_1358100 449 IYSYYQR|KI 0.090 . PBANKA_1358100 450 YSYYQRK|IN 0.083 . PBANKA_1358100 477 DYTNTYR|DL 0.096 . PBANKA_1358100 484 DLLDFIK|TL 0.057 . PBANKA_1358100 487 DFIKTLK|LQ 0.058 . PBANKA_1358100 499 FFSLDHR|NI 0.114 . PBANKA_1358100 506 NIQQITK|QL 0.066 . PBANKA_1358100 514 LYMIQYK|KS 0.060 . PBANKA_1358100 515 YMIQYKK|SQ 0.112 . PBANKA_1358100 518 QYKKSQR|RA 0.087 . PBANKA_1358100 519 YKKSQRR|AK 0.176 . PBANKA_1358100 521 KSQRRAK|IH 0.186 . PBANKA_1358100 526 AKIHAMK|IN 0.071 . PBANKA_1358100 531 MKINNLK|QM 0.072 . PBANKA_1358100 535 NLKQMEK|-- 0.065 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1358100 ATGTTTAATTATTATAAGTATTTTAGAACTAATTATTTTAAATATCGTTTTCTACATATA AATACAATCAAACATTTTCATCCTTTTACCAAAGTGGTGAGCAAAATACAAGAAAATGCA ATTAAAAAAAAGGAGAAAAATATAAAGCTGAAAGAAAGAATAAAGCTTATTATTTTTAGC TCATTTTATTTTTTTGCTTGTGATTATTTATATCATGTATATAAATTAAAGGGTAACAAA AAGGTGGAAGAGGGTGATGCATATACACCAAAAGAAAAATTGTTAACAGGTAATACCAAG AAATATGAAAATAAATACCAGAATAATGAAATGATTCCCAATTTTATTAAATGGATAAAT GTATTTTCAAGACCTGAACAAACGAACAAATATATGTTACAAAAGGATGGACCAGGTATC AGCGATAAAAACAATCAAAGATATGATAATAATGATGATTTAATATGCGAGCAAATAAAT AATAGCAATGTAGATGATGAAAGCATCTATGAAATAAAAATAAATAATATAAAAAAAAAA AAAAACGAACAAAATTACAAAAGGGATGAATTTACGGTCATTAGAAATCAAATATTTGGC TATAATATGGGGAATTCCATTGGCGGGAACACAGGAAAAGACCCATCACAAGAAAGAAAT TTTAAAGAAATAATTGAAAATAATTTATATCGAAAAAATTTATTAAGTGGAAACAACCTT TTTTTGATTGCTAATGGAGTTATATTTTTATGCTGGAGATTGAGTGATATTGCTCGAAAT CAAAAATTTTACAATTTTATGTGTAGACATTTTATTTGTTCATATGAAAATATAAAAAAA AAACATTATCATACCATTTTTACAGCTAGTATTAGTCATATGACATTGCCACATTTTTTA TTCAATATGTGGGCATTCCATACAATTACTAATACATTATTATATCCAGAAATTAAAGAA AAAAAAACAAATTACTATTATTTTTTTAATTACAAATCTAATATTTTAGAAAAAAAAATT ACAAATAAAGATATAATTAATGTTTGCCTTTTATCTTCTGTAATGTCAACTATTCCATAT ATTTTACTTAACAGATATGCTCAACTTTTAGGTGCATCCGGAGCTATAATGGGGCTTGTA TATATTTTATCAGTAGTCAAACCAAATGAAATATTTGTTTCTGTATTCCCGTTTCCTTAT TTAAAACTATCAGCTCTACAATTATGTCATATATCTATTTTAACAAATTTCATTTTTTTA TTTTACAAAAAAAATAATTTTAGTATTGCATGGTCAGCACACTTATTTGGTTTACTAGGC GGTGCAATATATAGCTATTATCAAAGAAAAATAAATAATAACTATAATTATTATCCCTTT ATTCAATTATCTATTCAAAATGGTTACCTTGATTACACAAATACATATCGAGATTTATTA GATTTCATAAAAACCTTAAAGCTTCAAACTATATCTTTTTTTTCATTAGATCACCGAAAT ATACAACAAATAACCAAACAATTATACATGATCCAATATAAAAAATCACAAAGACGCGCA AAAATCCATGCAATGAAAATTAACAATTTAAAACAAATGGAAAAGTGA
  • Download Fasta

  • Fasta :-

    MFNYYKYFRTNYFKYRFLHINTIKHFHPFTKVVSKIQENAIKKKEKNIKLKERIKLIIFS SFYFFACDYLYHVYKLKGNKKVEEGDAYTPKEKLLTGNTKKYENKYQNNEMIPNFIKWIN VFSRPEQTNKYMLQKDGPGISDKNNQRYDNNDDLICEQINNSNVDDESIYEIKINNIKKK KNEQNYKRDEFTVIRNQIFGYNMGNSIGGNTGKDPSQERNFKEIIENNLYRKNLLSGNNL FLIANGVIFLCWRLSDIARNQKFYNFMCRHFICSYENIKKKHYHTIFTASISHMTLPHFL FNMWAFHTITNTLLYPEIKEKKTNYYYFFNYKSNILEKKITNKDIINVCLLSSVMSTIPY ILLNRYAQLLGASGAIMGLVYILSVVKPNEIFVSVFPFPYLKLSALQLCHISILTNFIFL FYKKNNFSIAWSAHLFGLLGGAIYSYYQRKINNNYNYYPFIQLSIQNGYLDYTNTYRDLL DFIKTLKLQTISFFSLDHRNIQQITKQLYMIQYKKSQRRAKIHAMKINNLKQMEK

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_1358100216 SGKDPSQERN0.997unspPBANKA_1358100516 SQYKKSQRRA0.993unsp

PBANKA_135810      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India