PBANKA_1410000 | 26S protease regulatory subunit 7, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1410000OTHER0.9999110.0000310.000058
No Results

  • Fasta :-

    >PBANKA_1410000 MEEEPATQSKPLDDEDINILKSYGSGPYSKSIKKVENDITGLVTNINKLCGVRESDTGLC LPNQWDLQLDKQMLNEEQPLQVARCTKIINSDTDQTKYIINVKQIAKFVVGLGEKVAPSD IEEGMRVGVDRTKYKIQILLPPKIDPSVTMMTVEEKPDITYNDIGGCKEQLEKLREVVEM PLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEG ARLVRELFQMAKSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRG NIKVIMATNRPDTLDSALVRPGRIDRKIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELL ARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLLLAINKVIHGCKQFSATGKYMVYN
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1410000.fa Sequence name : PBANKA_1410000 Sequence length : 420 VALUES OF COMPUTED PARAMETERS Coef20 : 2.673 CoefTot : 0.000 ChDiff : -2 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.406 1.247 0.094 0.454 MesoH : -0.789 0.355 -0.344 0.176 MuHd_075 : 18.698 12.914 4.929 4.031 MuHd_095 : 17.928 11.725 5.160 3.223 MuHd_100 : 14.071 8.449 3.746 2.280 MuHd_105 : 9.999 4.168 1.800 1.086 Hmax_075 : -4.812 2.362 -2.872 1.916 Hmax_095 : -11.200 -2.362 -4.602 0.472 Hmax_100 : -14.700 -6.600 -6.370 -0.350 Hmax_105 : -13.900 -4.433 -5.162 0.023 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9931 0.0069 DFMC : 0.9945 0.0055
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 420 PBANKA_1410000 MEEEPATQSKPLDDEDINILKSYGSGPYSKSIKKVENDITGLVTNINKLCGVRESDTGLCLPNQWDLQLDKQMLNEEQPL 80 QVARCTKIINSDTDQTKYIINVKQIAKFVVGLGEKVAPSDIEEGMRVGVDRTKYKIQILLPPKIDPSVTMMTVEEKPDIT 160 YNDIGGCKEQLEKLREVVEMPLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEG 240 ARLVRELFQMAKSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRGNIKVIMATNRPDTLDSALVR 320 PGRIDRKIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELLARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLLLAI 400 NKVIHGCKQFSATGKYMVYN 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1410000 10 EPATQSK|PL 0.084 . PBANKA_1410000 21 EDINILK|SY 0.085 . PBANKA_1410000 30 GSGPYSK|SI 0.139 . PBANKA_1410000 33 PYSKSIK|KV 0.098 . PBANKA_1410000 34 YSKSIKK|VE 0.085 . PBANKA_1410000 48 LVTNINK|LC 0.062 . PBANKA_1410000 53 NKLCGVR|ES 0.088 . PBANKA_1410000 71 WDLQLDK|QM 0.057 . PBANKA_1410000 84 QPLQVAR|CT 0.118 . PBANKA_1410000 87 QVARCTK|II 0.136 . PBANKA_1410000 97 SDTDQTK|YI 0.075 . PBANKA_1410000 103 KYIINVK|QI 0.064 . PBANKA_1410000 107 NVKQIAK|FV 0.077 . PBANKA_1410000 115 VVGLGEK|VA 0.054 . PBANKA_1410000 126 DIEEGMR|VG 0.065 . PBANKA_1410000 131 MRVGVDR|TK 0.130 . PBANKA_1410000 133 VGVDRTK|YK 0.069 . PBANKA_1410000 135 VDRTKYK|IQ 0.064 . PBANKA_1410000 143 QILLPPK|ID 0.059 . PBANKA_1410000 156 MMTVEEK|PD 0.062 . PBANKA_1410000 168 NDIGGCK|EQ 0.057 . PBANKA_1410000 173 CKEQLEK|LR 0.063 . PBANKA_1410000 175 EQLEKLR|EV 0.093 . PBANKA_1410000 187 PLLQPER|FV 0.119 . PBANKA_1410000 197 LGIDPPK|GV 0.077 . PBANKA_1410000 209 GPPGTGK|TL 0.062 . PBANKA_1410000 214 GKTLTAR|AI 0.092 . PBANKA_1410000 219 ARAIANR|TD 0.083 . PBANKA_1410000 235 GSELVQK|YV 0.128 . PBANKA_1410000 242 YVGEGAR|LV 0.115 . PBANKA_1410000 245 EGARLVR|EL 0.253 . PBANKA_1410000 252 ELFQMAK|SK 0.077 . PBANKA_1410000 254 FQMAKSK|KA 0.080 . PBANKA_1410000 255 QMAKSKK|AC 0.109 . PBANKA_1410000 271 DAIGGSR|GD 0.087 . PBANKA_1410000 284 GDHEVQR|TM 0.110 . PBANKA_1410000 299 LDGFDNR|GN 0.119 . PBANKA_1410000 303 DNRGNIK|VI 0.062 . PBANKA_1410000 310 VIMATNR|PD 0.070 . PBANKA_1410000 320 LDSALVR|PG 0.091 . PBANKA_1410000 323 ALVRPGR|ID 0.312 . PBANKA_1410000 326 RPGRIDR|KI 0.417 . PBANKA_1410000 327 PGRIDRK|IE 0.072 . PBANKA_1410000 338 LPDLEGR|TH 0.083 . PBANKA_1410000 343 GRTHIFK|IH 0.064 . PBANKA_1410000 353 NTMNMSR|DV 0.146 . PBANKA_1410000 356 NMSRDVR|FE 0.206 . PBANKA_1410000 362 RFELLAR|LC 0.069 . PBANKA_1410000 373 STGSDIR|SV 0.274 . PBANKA_1410000 385 AGMFAIR|AR 0.085 . PBANKA_1410000 387 MFAIRAR|RK 0.112 . PBANKA_1410000 388 FAIRARR|KT 0.379 . PBANKA_1410000 389 AIRARRK|TI 0.091 . PBANKA_1410000 394 RKTITEK|DL 0.070 . PBANKA_1410000 402 LLLAINK|VI 0.058 . PBANKA_1410000 408 KVIHGCK|QF 0.075 . PBANKA_1410000 415 QFSATGK|YM 0.072 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1410000 ATGGAAGAAGAACCAGCTACTCAGTCCAAACCATTAGATGATGAGGATATAAACATTTTG AAATCATATGGTTCTGGACCATATTCTAAAAGTATAAAAAAAGTGGAAAATGACATTACT GGATTGGTTACTAACATTAATAAGCTATGTGGGGTAAGGGAAAGCGATACAGGGCTATGT TTGCCAAATCAATGGGACTTGCAATTAGATAAGCAAATGTTAAATGAAGAGCAGCCACTA CAAGTAGCTAGATGTACAAAGATAATAAATTCTGATACCGATCAAACAAAATATATAATA AATGTAAAACAAATAGCAAAGTTTGTTGTCGGCTTAGGCGAGAAGGTGGCACCTAGTGAT ATTGAAGAAGGCATGAGAGTTGGGGTTGATAGAACAAAGTATAAAATTCAAATTTTATTG CCTCCTAAAATAGATCCTAGTGTTACTATGATGACTGTTGAAGAAAAACCAGATATAACA TATAATGACATTGGCGGATGTAAAGAACAATTAGAAAAATTAAGAGAAGTTGTTGAAATG CCTTTATTACAACCTGAGAGATTTGTAACTTTAGGTATTGACCCACCTAAGGGTGTTTTA CTTTATGGGCCTCCAGGTACAGGTAAAACATTAACAGCTCGAGCTATTGCAAATAGAACA GATGCTTGTTTCATTTGTGTTATAGGATCAGAATTAGTTCAAAAATATGTTGGTGAGGGG GCAAGACTTGTTAGAGAATTATTTCAAATGGCTAAATCTAAAAAAGCATGCATTTTATTT ATCGATGAAGTAGATGCAATAGGAGGATCAAGAGGAGATGAAAGTGCCCATGGAGATCAT GAAGTTCAAAGAACTATGCTTGAAATAGTAAATCAATTAGATGGTTTTGACAATAGAGGT AATATAAAAGTTATAATGGCAACTAATAGACCAGATACATTAGATAGCGCTTTAGTTCGG CCGGGTAGAATTGACAGAAAAATTGAATTTAGTTTACCAGATCTTGAAGGAAGAACACAT ATTTTTAAAATACATGCTAATACTATGAACATGAGTAGAGATGTGAGATTTGAACTTTTA GCAAGATTATGCCCTAATAGCACAGGTTCAGATATTAGAAGTGTATGTACAGAGGCAGGA ATGTTTGCAATCAGAGCAAGGAGAAAAACAATTACTGAAAAGGATTTATTACTCGCAATC AATAAAGTTATACATGGTTGTAAGCAATTTTCGGCAACTGGGAAATATATGGTGTATAAT TAA
  • Download Fasta

  • Fasta :-

    MEEEPATQSKPLDDEDINILKSYGSGPYSKSIKKVENDITGLVTNINKLCGVRESDTGLC LPNQWDLQLDKQMLNEEQPLQVARCTKIINSDTDQTKYIINVKQIAKFVVGLGEKVAPSD IEEGMRVGVDRTKYKIQILLPPKIDPSVTMMTVEEKPDITYNDIGGCKEQLEKLREVVEM PLLQPERFVTLGIDPPKGVLLYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEG ARLVRELFQMAKSKKACILFIDEVDAIGGSRGDESAHGDHEVQRTMLEIVNQLDGFDNRG NIKVIMATNRPDTLDSALVRPGRIDRKIEFSLPDLEGRTHIFKIHANTMNMSRDVRFELL ARLCPNSTGSDIRSVCTEAGMFAIRARRKTITEKDLLLAINKVIHGCKQFSATGKYMVYN

  • title: ATP binding site
  • coordinates: P204,P205,G206,T207,G208,K209,T210,L211,D262,N309
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_141000091 SKIINSDTDQ0.992unspPBANKA_1410000119 SKVAPSDIEE0.99unsp

PBANKA_141000      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India