PBANKA_1415500 | U4/U6.U5 tri-snRNP-associated protein 2, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1415500OTHER0.9999920.0000010.000006
No Results

  • Fasta :-

    >PBANKA_1415500 MPRKHAKKIKNDDDDGVTPKRRKNKEKQENERINNLLETEINVKNNLNKIEQTDNNINDK SESHNKTTKNNENNNIDNTSDNNKIRVCPYLRTINRNLLDFDFEKLCSISLSNLHVYACL VCGLYFQGIGRGTYAYTHALEKNHYVFINLETCKTCCIPENYEIHDASLNDIKYFLKPVY NKEQVEHLCNNLILGKSLDGADFFPGCVGLNNLKHTDYCNVIIQLLCCIVPLRNMLLLYE SKQNIAKNLIVVLAELLKKIYNPKNFKGVVSPHEFLQAVGIESKKNFKIGTKNDPLNFFL WIINKIHRHSEKKLQKKKKNMPNQVNKQNNIIANNNISKNGHPKNDDGEKNYTSTKKEHD KENNNAEQNKQDTNYESDKSSSHKKKRIKWMYDGTNIIDYCFDGELIIKTKKTKDDITEE GTSYEGKNDTTGRTNYIAHNQNDNNNNQYEDDNEFSENKKYIFKKTPFRTLSLKLPNPPI FKSTTESNIIPQVSIFELLTKYDGETETFLSDKAIPSTLIISKLPKYLIFTIQRFSKNNF FTEKNGTIVNFVIKNLDMKDYVHQDYLDQNPVTKYNLVANIFHSGTVTNGSYKIHVLQQA TNEWHEIEDLHVISILPQLVLLPESCIQLYQRQDVQLNGEIL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1415500.fa Sequence name : PBANKA_1415500 Sequence length : 642 VALUES OF COMPUTED PARAMETERS Coef20 : 2.697 CoefTot : -0.802 ChDiff : 8 ZoneTo : 11 KR : 5 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.206 2.041 0.334 0.589 MesoH : -0.555 0.627 -0.301 0.258 MuHd_075 : 21.083 4.592 3.651 3.740 MuHd_095 : 35.392 20.383 9.161 8.331 MuHd_100 : 30.923 17.275 9.059 7.382 MuHd_105 : 22.657 12.195 7.801 5.404 Hmax_075 : -12.600 -4.375 -5.647 -0.192 Hmax_095 : -0.612 3.238 -2.352 2.678 Hmax_100 : -4.100 1.800 -2.824 2.420 Hmax_105 : -7.817 -1.800 -4.136 1.540 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9598 0.0402 DFMC : 0.9698 0.0302
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 642 PBANKA_1415500 MPRKHAKKIKNDDDDGVTPKRRKNKEKQENERINNLLETEINVKNNLNKIEQTDNNINDKSESHNKTTKNNENNNIDNTS 80 DNNKIRVCPYLRTINRNLLDFDFEKLCSISLSNLHVYACLVCGLYFQGIGRGTYAYTHALEKNHYVFINLETCKTCCIPE 160 NYEIHDASLNDIKYFLKPVYNKEQVEHLCNNLILGKSLDGADFFPGCVGLNNLKHTDYCNVIIQLLCCIVPLRNMLLLYE 240 SKQNIAKNLIVVLAELLKKIYNPKNFKGVVSPHEFLQAVGIESKKNFKIGTKNDPLNFFLWIINKIHRHSEKKLQKKKKN 320 MPNQVNKQNNIIANNNISKNGHPKNDDGEKNYTSTKKEHDKENNNAEQNKQDTNYESDKSSSHKKKRIKWMYDGTNIIDY 400 CFDGELIIKTKKTKDDITEEGTSYEGKNDTTGRTNYIAHNQNDNNNNQYEDDNEFSENKKYIFKKTPFRTLSLKLPNPPI 480 FKSTTESNIIPQVSIFELLTKYDGETETFLSDKAIPSTLIISKLPKYLIFTIQRFSKNNFFTEKNGTIVNFVIKNLDMKD 560 YVHQDYLDQNPVTKYNLVANIFHSGTVTNGSYKIHVLQQATNEWHEIEDLHVISILPQLVLLPESCIQLYQRQDVQLNGE 640 IL 720 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 .. 720 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1415500 3 ----MPR|KH 0.088 . PBANKA_1415500 4 ---MPRK|HA 0.107 . PBANKA_1415500 7 MPRKHAK|KI 0.087 . PBANKA_1415500 8 PRKHAKK|IK 0.127 . PBANKA_1415500 10 KHAKKIK|ND 0.099 . PBANKA_1415500 20 DDGVTPK|RR 0.066 . PBANKA_1415500 21 DGVTPKR|RK 0.118 . PBANKA_1415500 22 GVTPKRR|KN 0.146 . PBANKA_1415500 23 VTPKRRK|NK 0.106 . PBANKA_1415500 25 PKRRKNK|EK 0.215 . PBANKA_1415500 27 RRKNKEK|QE 0.091 . PBANKA_1415500 32 EKQENER|IN 0.087 . PBANKA_1415500 44 ETEINVK|NN 0.057 . PBANKA_1415500 49 VKNNLNK|IE 0.065 . PBANKA_1415500 60 DNNINDK|SE 0.092 . PBANKA_1415500 66 KSESHNK|TT 0.069 . PBANKA_1415500 69 SHNKTTK|NN 0.072 . PBANKA_1415500 84 NTSDNNK|IR 0.053 . PBANKA_1415500 86 SDNNKIR|VC 0.104 . PBANKA_1415500 92 RVCPYLR|TI 0.082 . PBANKA_1415500 96 YLRTINR|NL 0.081 . PBANKA_1415500 105 LDFDFEK|LC 0.069 . PBANKA_1415500 131 YFQGIGR|GT 0.107 . PBANKA_1415500 142 YTHALEK|NH 0.058 . PBANKA_1415500 154 INLETCK|TC 0.061 . PBANKA_1415500 173 ASLNDIK|YF 0.058 . PBANKA_1415500 177 DIKYFLK|PV 0.077 . PBANKA_1415500 182 LKPVYNK|EQ 0.058 . PBANKA_1415500 196 NNLILGK|SL 0.080 . PBANKA_1415500 214 VGLNNLK|HT 0.059 . PBANKA_1415500 233 CCIVPLR|NM 0.065 . PBANKA_1415500 242 LLLYESK|QN 0.062 . PBANKA_1415500 247 SKQNIAK|NL 0.079 . PBANKA_1415500 258 VLAELLK|KI 0.056 . PBANKA_1415500 259 LAELLKK|IY 0.087 . PBANKA_1415500 264 KKIYNPK|NF 0.066 . PBANKA_1415500 267 YNPKNFK|GV 0.064 . PBANKA_1415500 284 AVGIESK|KN 0.063 . PBANKA_1415500 285 VGIESKK|NF 0.088 . PBANKA_1415500 288 ESKKNFK|IG 0.061 . PBANKA_1415500 292 NFKIGTK|ND 0.052 . PBANKA_1415500 305 FLWIINK|IH 0.061 . PBANKA_1415500 308 IINKIHR|HS 0.136 . PBANKA_1415500 312 IHRHSEK|KL 0.078 . PBANKA_1415500 313 HRHSEKK|LQ 0.123 . PBANKA_1415500 316 SEKKLQK|KK 0.065 . PBANKA_1415500 317 EKKLQKK|KK 0.084 . PBANKA_1415500 318 KKLQKKK|KN 0.113 . PBANKA_1415500 319 KLQKKKK|NM 0.139 . PBANKA_1415500 327 MPNQVNK|QN 0.081 . PBANKA_1415500 339 ANNNISK|NG 0.070 . PBANKA_1415500 344 SKNGHPK|ND 0.084 . PBANKA_1415500 350 KNDDGEK|NY 0.058 . PBANKA_1415500 356 KNYTSTK|KE 0.071 . PBANKA_1415500 357 NYTSTKK|EH 0.097 . PBANKA_1415500 361 TKKEHDK|EN 0.081 . PBANKA_1415500 370 NNAEQNK|QD 0.076 . PBANKA_1415500 379 TNYESDK|SS 0.108 . PBANKA_1415500 384 DKSSSHK|KK 0.075 . PBANKA_1415500 385 KSSSHKK|KR 0.136 . PBANKA_1415500 386 SSSHKKK|RI 0.248 . PBANKA_1415500 387 SSHKKKR|IK 0.354 . PBANKA_1415500 389 HKKKRIK|WM 0.083 . PBANKA_1415500 409 DGELIIK|TK 0.057 . PBANKA_1415500 411 ELIIKTK|KT 0.070 . PBANKA_1415500 412 LIIKTKK|TK 0.108 . PBANKA_1415500 414 IKTKKTK|DD 0.097 . PBANKA_1415500 427 GTSYEGK|ND 0.084 . PBANKA_1415500 433 KNDTTGR|TN 0.099 . PBANKA_1415500 459 NEFSENK|KY 0.056 . PBANKA_1415500 460 EFSENKK|YI 0.146 . PBANKA_1415500 464 NKKYIFK|KT 0.058 . PBANKA_1415500 465 KKYIFKK|TP 0.112 . PBANKA_1415500 469 FKKTPFR|TL 0.101 . PBANKA_1415500 474 FRTLSLK|LP 0.058 . PBANKA_1415500 482 PNPPIFK|ST 0.076 . PBANKA_1415500 501 IFELLTK|YD 0.072 . PBANKA_1415500 513 ETFLSDK|AI 0.063 . PBANKA_1415500 523 STLIISK|LP 0.056 . PBANKA_1415500 526 IISKLPK|YL 0.076 . PBANKA_1415500 534 LIFTIQR|FS 0.094 . PBANKA_1415500 537 TIQRFSK|NN 0.150 . PBANKA_1415500 544 NNFFTEK|NG 0.064 . PBANKA_1415500 554 IVNFVIK|NL 0.070 . PBANKA_1415500 559 IKNLDMK|DY 0.072 . PBANKA_1415500 574 DQNPVTK|YN 0.069 . PBANKA_1415500 593 VTNGSYK|IH 0.061 . PBANKA_1415500 632 CIQLYQR|QD 0.081 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1415500 ATGCCGAGAAAACACGCAAAAAAAATAAAAAATGACGATGATGATGGAGTAACGCCAAAA AGGAGGAAAAATAAAGAGAAACAGGAAAATGAAAGAATTAATAATTTATTGGAAACTGAA ATTAATGTAAAAAATAATTTAAACAAAATAGAACAAACTGATAATAATATAAATGACAAA AGCGAATCACATAATAAAACAACCAAAAATAATGAAAATAATAATATTGATAATACTAGT GACAATAATAAAATTAGAGTATGTCCTTATTTAAGAACAATAAACAGAAATTTGCTTGAT TTTGATTTTGAAAAATTATGTAGTATTTCTTTGTCCAATTTACATGTATATGCATGTTTA GTATGTGGGTTATATTTTCAAGGAATCGGAAGAGGAACATATGCATATACACACGCATTA GAAAAAAATCATTATGTTTTTATAAATTTAGAAACTTGCAAAACTTGCTGTATTCCTGAA AATTATGAAATCCATGATGCTTCATTAAATGATATAAAATATTTTTTAAAACCTGTTTAT AATAAAGAGCAAGTAGAACATTTATGTAATAATTTAATTTTAGGGAAATCTTTAGACGGT GCTGATTTTTTTCCAGGTTGTGTAGGTTTAAATAATTTAAAGCATACAGATTATTGTAAT GTAATTATACAGTTATTATGTTGTATTGTTCCTTTAAGAAATATGTTATTATTATATGAA AGTAAGCAAAATATTGCAAAAAATTTAATAGTTGTTTTAGCAGAATTGCTAAAAAAAATA TATAATCCAAAAAATTTTAAAGGAGTTGTATCACCTCATGAATTTTTACAAGCAGTAGGT ATTGAATCAAAAAAAAATTTTAAAATTGGTACAAAAAACGATCCATTAAACTTTTTTTTA TGGATTATTAATAAAATTCATAGACATTCAGAAAAAAAATTACAAAAAAAAAAAAAAAAT ATGCCCAATCAAGTAAACAAACAAAATAATATAATAGCTAATAACAATATTTCGAAAAAC GGACATCCCAAAAATGATGATGGTGAGAAAAATTATACTAGTACTAAAAAGGAGCATGAC AAGGAGAATAATAATGCAGAACAAAATAAACAAGATACAAATTATGAGTCAGATAAAAGT AGTAGCCATAAGAAAAAGAGGATAAAATGGATGTATGATGGCACAAATATTATTGATTAT TGTTTTGATGGAGAGTTAATTATTAAAACTAAAAAAACAAAAGATGATATAACAGAAGAA GGTACGAGTTATGAGGGAAAAAATGATACTACAGGAAGAACTAATTACATTGCTCATAAC CAAAATGATAATAATAATAACCAATATGAAGATGATAATGAATTTAGTGAAAACAAAAAA TATATATTTAAGAAAACCCCATTTCGTACTTTATCTTTAAAATTGCCTAATCCTCCAATA TTTAAAAGCACAACCGAAAGTAATATAATACCTCAAGTATCCATTTTTGAGTTATTAACA AAATATGATGGGGAAACAGAAACCTTTTTGTCAGATAAAGCAATCCCAAGTACATTAATT ATTTCAAAATTGCCAAAATATTTAATTTTTACCATACAAAGATTTTCAAAAAATAATTTT TTTACGGAAAAAAATGGAACTATTGTTAATTTCGTTATCAAAAATCTCGATATGAAAGAT TATGTACATCAAGATTATCTTGACCAAAACCCAGTAACAAAATATAATTTAGTTGCAAAT ATATTTCATAGTGGTACTGTTACTAATGGCTCATATAAAATACATGTTTTACAACAAGCT ACAAACGAATGGCATGAAATCGAGGATCTACATGTTATTTCGATTTTACCACAACTCGTT TTATTGCCAGAATCATGCATTCAGTTATATCAGCGTCAAGATGTTCAGTTAAATGGAGAG ATACTATAA
  • Download Fasta

  • Fasta :-

    MPRKHAKKIKNDDDDGVTPKRRKNKEKQENERINNLLETEINVKNNLNKIEQTDNNINDK SESHNKTTKNNENNNIDNTSDNNKIRVCPYLRTINRNLLDFDFEKLCSISLSNLHVYACL VCGLYFQGIGRGTYAYTHALEKNHYVFINLETCKTCCIPENYEIHDASLNDIKYFLKPVY NKEQVEHLCNNLILGKSLDGADFFPGCVGLNNLKHTDYCNVIIQLLCCIVPLRNMLLLYE SKQNIAKNLIVVLAELLKKIYNPKNFKGVVSPHEFLQAVGIESKKNFKIGTKNDPLNFFL WIINKIHRHSEKKLQKKKKNMPNQVNKQNNIIANNNISKNGHPKNDDGEKNYTSTKKEHD KENNNAEQNKQDTNYESDKSSSHKKKRIKWMYDGTNIIDYCFDGELIIKTKKTKDDITEE GTSYEGKNDTTGRTNYIAHNQNDNNNNQYEDDNEFSENKKYIFKKTPFRTLSLKLPNPPI FKSTTESNIIPQVSIFELLTKYDGETETFLSDKAIPSTLIISKLPKYLIFTIQRFSKNNF FTEKNGTIVNFVIKNLDMKDYVHQDYLDQNPVTKYNLVANIFHSGTVTNGSYKIHVLQQA TNEWHEIEDLHVISILPQLVLLPESCIQLYQRQDVQLNGEIL

  • title: Active Site
  • coordinates: N212,D217,S591,D609
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_1415500382 SDKSSSHKKK0.997unspPBANKA_1415500382 SDKSSSHKKK0.997unspPBANKA_1415500382 SDKSSSHKKK0.997unspPBANKA_1415500271 SKGVVSPHEF0.992unspPBANKA_1415500310 SIHRHSEKKL0.997unsp

PBANKA_141550      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India