PBANKA_1441600 | ataxin-3, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1441600OTHER0.9999410.0000160.000043
No Results

  • Fasta :-

    >PBANKA_1441600 MSKKYVYWEKQGNDRMCGLHCINSILQGPYYSEDVLAKIGKELDEKEKEFLKVSSNELIR TNSSNVLDDGFINISVLIESLRRKNILLKNAFEEDLTKIISSGYQDIGYICNLEQHWFSV RKIHNTWYVLDSLKSAPLFIKDINLKCYFNDIFKKYHIFSVQNMNPYISLPKPDINFEPK NPNQFYIPTNHISEISSVSNGFILEDKYNMNKSENSSLLSSFNKPQNFQWPKNGGRKLND DINNISSNNMDDDGDDDFKTALRLSMEEYIKNLPPPKSEELINEDFINVMIKLPNKKIQR KFGVSKTLADIFYWIEYESVNNQQIDSSLIFKNCYYLYQLFPRRKFCKYQNGSIELQVGN KVELVHDKSLKDMKFEKEETFMMQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1441600.fa Sequence name : PBANKA_1441600 Sequence length : 384 VALUES OF COMPUTED PARAMETERS Coef20 : 3.191 CoefTot : -0.428 ChDiff : -2 ZoneTo : 8 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.524 0.976 -0.012 0.407 MesoH : -1.037 0.034 -0.576 0.137 MuHd_075 : 35.718 16.404 9.563 5.130 MuHd_095 : 26.863 12.810 6.670 5.126 MuHd_100 : 25.275 12.161 6.055 4.501 MuHd_105 : 17.747 8.659 4.075 3.105 Hmax_075 : 7.175 3.938 0.560 2.083 Hmax_095 : -1.487 1.225 -1.869 1.400 Hmax_100 : 1.400 -0.500 -2.272 1.910 Hmax_105 : -1.517 0.117 -2.252 1.820 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8696 0.1304 DFMC : 0.8322 0.1678
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 384 PBANKA_1441600 MSKKYVYWEKQGNDRMCGLHCINSILQGPYYSEDVLAKIGKELDEKEKEFLKVSSNELIRTNSSNVLDDGFINISVLIES 80 LRRKNILLKNAFEEDLTKIISSGYQDIGYICNLEQHWFSVRKIHNTWYVLDSLKSAPLFIKDINLKCYFNDIFKKYHIFS 160 VQNMNPYISLPKPDINFEPKNPNQFYIPTNHISEISSVSNGFILEDKYNMNKSENSSLLSSFNKPQNFQWPKNGGRKLND 240 DINNISSNNMDDDGDDDFKTALRLSMEEYIKNLPPPKSEELINEDFINVMIKLPNKKIQRKFGVSKTLADIFYWIEYESV 320 NNQQIDSSLIFKNCYYLYQLFPRRKFCKYQNGSIELQVGNKVELVHDKSLKDMKFEKEETFMMQ 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1441600 3 ----MSK|KY 0.062 . PBANKA_1441600 4 ---MSKK|YV 0.179 . PBANKA_1441600 10 KYVYWEK|QG 0.066 . PBANKA_1441600 15 EKQGNDR|MC 0.088 . PBANKA_1441600 38 SEDVLAK|IG 0.059 . PBANKA_1441600 41 VLAKIGK|EL 0.086 . PBANKA_1441600 46 GKELDEK|EK 0.058 . PBANKA_1441600 48 ELDEKEK|EF 0.059 . PBANKA_1441600 52 KEKEFLK|VS 0.060 . PBANKA_1441600 60 SSNELIR|TN 0.090 . PBANKA_1441600 82 VLIESLR|RK 0.076 . PBANKA_1441600 83 LIESLRR|KN 0.084 . PBANKA_1441600 84 IESLRRK|NI 0.082 . PBANKA_1441600 89 RKNILLK|NA 0.074 . PBANKA_1441600 98 FEEDLTK|II 0.069 . PBANKA_1441600 121 QHWFSVR|KI 0.085 . PBANKA_1441600 122 HWFSVRK|IH 0.076 . PBANKA_1441600 134 YVLDSLK|SA 0.068 . PBANKA_1441600 141 SAPLFIK|DI 0.065 . PBANKA_1441600 146 IKDINLK|CY 0.059 . PBANKA_1441600 154 YFNDIFK|KY 0.059 . PBANKA_1441600 155 FNDIFKK|YH 0.101 . PBANKA_1441600 172 PYISLPK|PD 0.059 . PBANKA_1441600 180 DINFEPK|NP 0.062 . PBANKA_1441600 207 GFILEDK|YN 0.064 . PBANKA_1441600 212 DKYNMNK|SE 0.074 . PBANKA_1441600 224 LLSSFNK|PQ 0.066 . PBANKA_1441600 232 QNFQWPK|NG 0.073 . PBANKA_1441600 236 WPKNGGR|KL 0.095 . PBANKA_1441600 237 PKNGGRK|LN 0.097 . PBANKA_1441600 259 DGDDDFK|TA 0.056 . PBANKA_1441600 263 DFKTALR|LS 0.065 . PBANKA_1441600 271 SMEEYIK|NL 0.056 . PBANKA_1441600 277 KNLPPPK|SE 0.080 . PBANKA_1441600 292 FINVMIK|LP 0.066 . PBANKA_1441600 296 MIKLPNK|KI 0.064 . PBANKA_1441600 297 IKLPNKK|IQ 0.091 . PBANKA_1441600 300 PNKKIQR|KF 0.111 . PBANKA_1441600 301 NKKIQRK|FG 0.084 . PBANKA_1441600 306 RKFGVSK|TL 0.079 . PBANKA_1441600 332 DSSLIFK|NC 0.061 . PBANKA_1441600 343 LYQLFPR|RK 0.082 . PBANKA_1441600 344 YQLFPRR|KF 0.132 . PBANKA_1441600 345 QLFPRRK|FC 0.090 . PBANKA_1441600 348 PRRKFCK|YQ 0.090 . PBANKA_1441600 361 ELQVGNK|VE 0.054 . PBANKA_1441600 368 VELVHDK|SL 0.084 . PBANKA_1441600 371 VHDKSLK|DM 0.064 . PBANKA_1441600 374 KSLKDMK|FE 0.073 . PBANKA_1441600 377 KDMKFEK|EE 0.064 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1441600 ATGAGTAAAAAATATGTATATTGGGAAAAGCAGGGTAATGATCGTATGTGTGGTCTTCAC TGCATAAATAGTATCCTTCAGGGGCCTTATTATAGCGAAGACGTTCTGGCAAAAATAGGA AAAGAACTTGATGAAAAAGAGAAAGAATTTTTAAAAGTATCTTCTAACGAGTTAATAAGA ACAAATTCATCAAATGTTTTGGATGATGGTTTTATAAATATTTCTGTGTTGATTGAAAGC TTAAGACGAAAAAATATTTTATTAAAAAATGCTTTTGAAGAAGATTTAACAAAAATAATA TCAAGTGGCTATCAAGATATTGGCTATATATGTAATTTAGAACAACATTGGTTTAGTGTA CGTAAAATTCATAATACTTGGTATGTATTAGATAGCTTAAAAAGTGCACCATTATTTATT AAAGATATAAATTTAAAATGTTATTTTAATGACATTTTTAAAAAATATCATATATTTTCT GTACAAAATATGAACCCATATATTTCTTTACCAAAGCCTGATATAAATTTTGAACCTAAA AATCCCAATCAATTTTATATACCAACAAATCATATTTCTGAAATATCATCTGTGTCTAAT GGTTTTATATTGGAAGATAAATATAATATGAACAAATCAGAAAATAGTAGTCTCCTTTCA AGTTTTAATAAGCCTCAAAATTTTCAATGGCCAAAAAATGGGGGAAGAAAATTAAATGAC GATATAAATAATATTAGCTCAAATAATATGGATGATGATGGCGATGACGATTTTAAAACT GCTTTGAGATTATCAATGGAAGAATATATTAAGAATCTACCACCTCCGAAAAGCGAAGAA TTAATTAATGAAGATTTCATAAATGTTATGATCAAATTACCAAACAAAAAAATCCAAAGA AAATTTGGCGTATCAAAAACTTTAGCGGACATATTTTATTGGATAGAATATGAATCGGTA AATAATCAGCAGATAGACTCATCACTAATTTTTAAAAACTGCTATTATCTTTATCAATTA TTCCCAAGGAGAAAGTTTTGCAAGTATCAAAATGGATCTATCGAATTACAAGTTGGCAAC AAGGTTGAATTGGTTCATGACAAAAGTTTGAAGGATATGAAATTCGAAAAAGAAGAAACA TTTATGATGCAATAA
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  • Fasta :-

    MSKKYVYWEKQGNDRMCGLHCINSILQGPYYSEDVLAKIGKELDEKEKEFLKVSSNELIR TNSSNVLDDGFINISVLIESLRRKNILLKNAFEEDLTKIISSGYQDIGYICNLEQHWFSV RKIHNTWYVLDSLKSAPLFIKDINLKCYFNDIFKKYHIFSVQNMNPYISLPKPDINFEPK NPNQFYIPTNHISEISSVSNGFILEDKYNMNKSENSSLLSSFNKPQNFQWPKNGGRKLND DINNISSNNMDDDGDDDFKTALRLSMEEYIKNLPPPKSEELINEDFINVMIKLPNKKIQR KFGVSKTLADIFYWIEYESVNNQQIDSSLIFKNCYYLYQLFPRRKFCKYQNGSIELQVGN KVELVHDKSLKDMKFEKEETFMMQ

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PBANKA_1441600265 SALRLSMEEY0.998unspPBANKA_1441600369 SVHDKSLKDM0.997unsp

PBANKA_144160      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India