PBANKA_1445100 | ATP-dependent protease subunit ClpQ, putative

_IDPredictionOTHERSPmTPCS_Position
PBANKA_1445100mTP0.3841510.0002090.615640CS pos: 24-25. RSY-FS. Pr: 0.4606
No Results

  • Fasta :-

    >PBANKA_1445100 MFFKSLSNIIKPRKQITTAIQRSYFSDNGKIVIPRHGTTILCVRKNNEVCLIGDGMVSQG TMIVKGNAKKIRRLKDNILMGFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWRT DRYLRHLEAVLIVADKDTLLEVTGNGDVLEPSGNVLGTGSGGPYAIAAARALYDIENLSA KDIAYKAMNIAADMCCHTNHNFICETL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PBANKA_1445100.fa Sequence name : PBANKA_1445100 Sequence length : 207 VALUES OF COMPUTED PARAMETERS Coef20 : 4.462 CoefTot : -1.678 ChDiff : 4 ZoneTo : 47 KR : 9 DE : 1 CleavSite : 37 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.147 1.300 0.135 0.534 MesoH : -0.728 0.288 -0.366 0.218 MuHd_075 : 41.064 21.672 12.526 8.906 MuHd_095 : 27.881 18.611 8.044 7.441 MuHd_100 : 29.689 26.687 10.679 8.350 MuHd_105 : 33.191 31.699 13.024 9.065 Hmax_075 : 14.583 11.550 5.012 4.538 Hmax_095 : 12.513 5.425 2.224 2.817 Hmax_100 : 6.500 16.600 1.675 4.150 Hmax_105 : 12.833 20.183 2.639 5.203 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0953 0.9047 DFMC : 0.0880 0.9120 This protein is probably imported in mitochondria. f(Ser) = 0.0851 f(Arg) = 0.0851 CMi = 0.44994 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 207 PBANKA_1445100 MFFKSLSNIIKPRKQITTAIQRSYFSDNGKIVIPRHGTTILCVRKNNEVCLIGDGMVSQGTMIVKGNAKKIRRLKDNILM 80 GFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWRTDRYLRHLEAVLIVADKDTLLEVTGNGDVLEPSGNVLGTGS 160 GGPYAIAAARALYDIENLSAKDIAYKAMNIAADMCCHTNHNFICETL 240 ................................................................................ 80 ................................................................................ 160 ............................................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PBANKA_1445100 4 ---MFFK|SL 0.100 . PBANKA_1445100 11 SLSNIIK|PR 0.077 . PBANKA_1445100 13 SNIIKPR|KQ 0.101 . PBANKA_1445100 14 NIIKPRK|QI 0.099 . PBANKA_1445100 22 ITTAIQR|SY 0.087 . PBANKA_1445100 30 YFSDNGK|IV 0.084 . PBANKA_1445100 35 GKIVIPR|HG 0.114 . PBANKA_1445100 44 TTILCVR|KN 0.077 . PBANKA_1445100 45 TILCVRK|NN 0.087 . PBANKA_1445100 65 QGTMIVK|GN 0.066 . PBANKA_1445100 69 IVKGNAK|KI 0.065 . PBANKA_1445100 70 VKGNAKK|IR 0.080 . PBANKA_1445100 72 GNAKKIR|RL 0.152 . PBANKA_1445100 73 NAKKIRR|LK 0.171 . PBANKA_1445100 75 KKIRRLK|DN 0.167 . PBANKA_1445100 95 CFTLLDK|FE 0.058 . PBANKA_1445100 99 LDKFETK|ID 0.060 . PBANKA_1445100 109 YPNQLLR|SC 0.099 . PBANKA_1445100 116 SCVELAK|LW 0.062 . PBANKA_1445100 119 ELAKLWR|TD 0.085 . PBANKA_1445100 122 KLWRTDR|YL 0.320 . PBANKA_1445100 125 RTDRYLR|HL 0.285 . PBANKA_1445100 136 VLIVADK|DT 0.066 . PBANKA_1445100 170 YAIAAAR|AL 0.129 . PBANKA_1445100 181 IENLSAK|DI 0.088 . PBANKA_1445100 186 AKDIAYK|AM 0.067 . ____________________________^_________________

  • Fasta :-

    >PBANKA_1445100 ATGTTTTTTAAATCCCTTTCAAATATAATTAAACCACGAAAACAAATAACCACAGCAATT CAAAGAAGCTACTTTTCCGATAATGGAAAGATTGTAATACCGCGGCATGGAACTACGATA TTGTGCGTACGCAAAAACAATGAAGTGTGTTTAATCGGTGATGGAATGGTTTCCCAAGGA ACAATGATAGTTAAAGGAAACGCAAAAAAAATAAGAAGGCTAAAAGATAACATTTTAATG GGTTTCGCAGGTGCTACAGCAGATTGTTTTACCTTATTAGACAAATTTGAAACAAAAATT GATGAATATCCAAATCAACTTCTGAGAAGCTGTGTTGAACTAGCCAAATTGTGGAGAACT GATAGATATTTACGACATTTGGAAGCAGTATTAATAGTGGCTGACAAGGACACTTTATTG GAGGTAACCGGAAATGGTGACGTTTTAGAACCATCTGGAAATGTTTTAGGCACAGGATCG GGGGGCCCATATGCAATAGCCGCCGCACGGGCTTTATACGATATCGAAAATTTATCTGCT AAGGACATTGCTTATAAAGCTATGAATATTGCAGCTGATATGTGCTGTCACACGAATCAT AACTTTATATGTGAAACATTGTAG
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  • Fasta :-

    MFFKSLSNIIKPRKQITTAIQRSYFSDNGKIVIPRHGTTILCVRKNNEVCLIGDGMVSQG TMIVKGNAKKIRRLKDNILMGFAGATADCFTLLDKFETKIDEYPNQLLRSCVELAKLWRT DRYLRHLEAVLIVADKDTLLEVTGNGDVLEPSGNVLGTGSGGPYAIAAARALYDIENLSA KDIAYKAMNIAADMCCHTNHNFICETL

  • title: active site
  • coordinates: T38,D54,M56,K70,S160
No Results
No Results
IDSitePeptideScoreMethod
PBANKA_1445100179 SIENLSAKDI0.996unsp

PBANKA_144510      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India