PCHAS_0406600 | ATP-dependent Clp protease proteolytic subunit, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:  GO:0006508      

  • Computed_GO_Processes:  proteolysis      

  • Curated_GO_Component_IDs:  GO:0020011      

  • Curated_GO_Components:  apicoplast      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PCHAS_0406600SP0.0726920.9264870.000821CS pos: 20-21. IET-KQ. Pr: 0.7410
No Results

  • Fasta :-

    >PCHAS_0406600 MIYLILFILLISIKNNTIETKQNLKNPNILTFINFTNTSSLETPKKRIKEKFHTQNHKWN SLTNDGILSKNIEGLNNGKNISKNLNETTTNTNNDVTKVDQGAESKIRQNVMEKMLEKIM KKKKYKKLEKLLCCNNSIKAMKKNIKLYFFKKRIIYLTDEINKKTSDELIKQLLYLDNIN HNDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSFP NCRIMIHQPLGNAFGHPHDIEIQTKEILYLKKLLYYYLSKFTNKSEETIEKHSDRDYYMN ALEAKEYGIVDEVVETKLPHPYFPDLTKS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0406600.fa Sequence name : PCHAS_0406600 Sequence length : 329 VALUES OF COMPUTED PARAMETERS Coef20 : 4.456 CoefTot : -0.885 ChDiff : 17 ZoneTo : 41 KR : 3 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.971 1.841 0.343 0.655 MesoH : -0.534 0.345 -0.379 0.247 MuHd_075 : 18.748 17.027 5.619 5.395 MuHd_095 : 20.221 13.743 6.147 3.029 MuHd_100 : 23.486 17.489 7.183 4.228 MuHd_105 : 21.788 17.533 6.689 4.492 Hmax_075 : 15.400 6.800 1.047 3.000 Hmax_095 : 6.900 6.400 -0.056 2.540 Hmax_100 : 9.100 11.000 0.686 3.820 Hmax_105 : 1.137 8.100 0.073 1.950 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8782 0.1218 DFMC : 0.8120 0.1880
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 329 PCHAS_0406600 MIYLILFILLISIKNNTIETKQNLKNPNILTFINFTNTSSLETPKKRIKEKFHTQNHKWNSLTNDGILSKNIEGLNNGKN 80 ISKNLNETTTNTNNDVTKVDQGAESKIRQNVMEKMLEKIMKKKKYKKLEKLLCCNNSIKAMKKNIKLYFFKKRIIYLTDE 160 INKKTSDELIKQLLYLDNINHNDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSFP 240 NCRIMIHQPLGNAFGHPHDIEIQTKEILYLKKLLYYYLSKFTNKSEETIEKHSDRDYYMNALEAKEYGIVDEVVETKLPH 320 PYFPDLTKS 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ......... 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0406600 14 ILLISIK|NN 0.063 . PCHAS_0406600 21 NNTIETK|QN 0.064 . PCHAS_0406600 25 ETKQNLK|NP 0.052 . PCHAS_0406600 45 SSLETPK|KR 0.064 . PCHAS_0406600 46 SLETPKK|RI 0.149 . PCHAS_0406600 47 LETPKKR|IK 0.219 . PCHAS_0406600 49 TPKKRIK|EK 0.074 . PCHAS_0406600 51 KKRIKEK|FH 0.094 . PCHAS_0406600 58 FHTQNHK|WN 0.067 . PCHAS_0406600 70 NDGILSK|NI 0.066 . PCHAS_0406600 79 EGLNNGK|NI 0.067 . PCHAS_0406600 83 NGKNISK|NL 0.061 . PCHAS_0406600 98 TNNDVTK|VD 0.080 . PCHAS_0406600 106 DQGAESK|IR 0.059 . PCHAS_0406600 108 GAESKIR|QN 0.087 . PCHAS_0406600 114 RQNVMEK|ML 0.082 . PCHAS_0406600 118 MEKMLEK|IM 0.057 . PCHAS_0406600 121 MLEKIMK|KK 0.064 . PCHAS_0406600 122 LEKIMKK|KK 0.097 . PCHAS_0406600 123 EKIMKKK|KY 0.124 . PCHAS_0406600 124 KIMKKKK|YK 0.105 . PCHAS_0406600 126 MKKKKYK|KL 0.091 . PCHAS_0406600 127 KKKKYKK|LE 0.072 . PCHAS_0406600 130 KYKKLEK|LL 0.058 . PCHAS_0406600 139 CCNNSIK|AM 0.066 . PCHAS_0406600 142 NSIKAMK|KN 0.065 . PCHAS_0406600 143 SIKAMKK|NI 0.100 . PCHAS_0406600 146 AMKKNIK|LY 0.062 . PCHAS_0406600 151 IKLYFFK|KR 0.066 . PCHAS_0406600 152 KLYFFKK|RI 0.102 . PCHAS_0406600 153 LYFFKKR|II 0.163 . PCHAS_0406600 163 LTDEINK|KT 0.064 . PCHAS_0406600 164 TDEINKK|TS 0.104 . PCHAS_0406600 171 TSDELIK|QL 0.059 . PCHAS_0406600 185 INHNDIK|IY 0.070 . PCHAS_0406600 209 DIFNYIK|SD 0.072 . PCHAS_0406600 232 VILASGK|KG 0.056 . PCHAS_0406600 233 ILASGKK|GK 0.116 . PCHAS_0406600 235 ASGKKGK|RK 0.066 . PCHAS_0406600 236 SGKKGKR|KS 0.148 . PCHAS_0406600 237 GKKGKRK|SF 0.159 . PCHAS_0406600 243 KSFPNCR|IM 0.087 . PCHAS_0406600 265 DIEIQTK|EI 0.059 . PCHAS_0406600 271 KEILYLK|KL 0.053 . PCHAS_0406600 272 EILYLKK|LL 0.089 . PCHAS_0406600 280 LYYYLSK|FT 0.080 . PCHAS_0406600 284 LSKFTNK|SE 0.115 . PCHAS_0406600 291 SEETIEK|HS 0.064 . PCHAS_0406600 295 IEKHSDR|DY 0.118 . PCHAS_0406600 305 MNALEAK|EY 0.088 . PCHAS_0406600 317 DEVVETK|LP 0.064 . PCHAS_0406600 328 YFPDLTK|S- 0.075 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0406600 ATGATATATTTAATATTGTTTATACTTTTGATCTCAATAAAAAATAATACAATTGAAACA AAACAAAACTTAAAGAACCCAAACATTTTAACGTTCATAAATTTTACAAATACAAGTTCA TTAGAAACCCCAAAAAAAAGAATAAAAGAAAAGTTTCATACTCAAAATCATAAATGGAAT TCATTAACAAATGATGGCATATTAAGTAAAAATATAGAAGGTCTAAATAATGGAAAAAAT ATTTCCAAAAATTTAAACGAGACAACCACTAATACAAACAATGATGTTACAAAAGTAGAT CAAGGAGCCGAAAGTAAGATCAGACAAAATGTGATGGAAAAAATGTTAGAAAAAATAATG AAAAAAAAAAAATATAAAAAATTGGAAAAGCTATTATGTTGTAACAACAGTATTAAAGCT ATGAAAAAAAATATAAAGTTATATTTTTTTAAAAAAAGAATAATATATTTAACAGATGAA ATAAATAAAAAAACATCCGATGAACTTATTAAGCAATTATTATATTTAGATAATATAAAT CATAATGATATAAAGATATATATTAATTCTCCTGGTGGTTCAATAAATGAGGGCTTAGCA ATTTTAGATATTTTTAATTATATCAAATCAGATATACAAACAATTTCATTTGGTTTAGTA GCCTCAATGGCTTCAGTAATTTTAGCTAGTGGTAAAAAAGGAAAAAGAAAGTCATTCCCA AATTGCAGAATTATGATACATCAACCACTTGGAAATGCATTTGGTCATCCTCATGATATT GAAATACAAACAAAAGAAATACTTTATCTTAAAAAACTATTATATTACTATTTATCAAAA TTTACAAATAAAAGCGAAGAAACAATTGAAAAACATTCAGACAGAGATTATTATATGAAT GCTTTGGAAGCAAAAGAATATGGAATTGTTGATGAAGTTGTTGAAACAAAATTGCCTCAT CCTTATTTTCCTGATCTAACCAAGAGTTGA
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  • Fasta :-

    MIYLILFILLISIKNNTIETKQNLKNPNILTFINFTNTSSLETPKKRIKEKFHTQNHKWN SLTNDGILSKNIEGLNNGKNISKNLNETTTNTNNDVTKVDQGAESKIRQNVMEKMLEKIM KKKKYKKLEKLLCCNNSIKAMKKNIKLYFFKKRIIYLTDEINKKTSDELIKQLLYLDNIN HNDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSFP NCRIMIHQPLGNAFGHPHDIEIQTKEILYLKKLLYYYLSKFTNKSEETIEKHSDRDYYMN ALEAKEYGIVDEVVETKLPHPYFPDLTKS

  • title: active site residues
  • coordinates: S222,H247,D296
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_0406600166 SNKKTSDELI0.994unspPCHAS_0406600293 SIEKHSDRDY0.998unsp

PCHAS_040660      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India