PCHAS_0412900 | DER1-like protein, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0020011      

  • Curated_GO_Components:  apicoplast      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:  ubiquitin-dependent ERAD pathway      

_IDPredictionOTHERSPmTPCS_Position
PCHAS_0412900SP0.0375770.9597700.002653CS pos: 23-24. CDA-KV. Pr: 0.8801
No Results

  • Fasta :-

    >PCHAS_0412900 MLIYRFLFFLSIIASVRYYYCDAKVCVNDISSQLLKNISFKNSVRNDGKTKGQNTCYNFR KEKKNILKKKIKKKYSLNNSKGYTQKKKKYNLYFLNSSKFTDIKENVKAWFNLDYIENHY AYSYIKSFARIPPITKIYLINTFILSVLIHLNKNVYKYILYDFDKIFKNGEIWRLVTPYF YIGNLYLQYILMFNYLNIYMSSVEIAHYKNPEDFLIFLTYGYISNIFFTIIASMYNENVM DLKKHIRKIRSLITAMPSTNNKDDNKFVQKETYNHLGYVFSTYILYYWSRINEGSLINCF DLFFIKAEYIPFFFVIQNILLYNEFSFFEVASILSSYTFFTYEKYLKSNFLRALFRGFLK FIRVYPMYNMYKEEYE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0412900.fa Sequence name : PCHAS_0412900 Sequence length : 376 VALUES OF COMPUTED PARAMETERS Coef20 : 4.831 CoefTot : 0.373 ChDiff : 24 ZoneTo : 21 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.800 1.753 0.265 0.749 MesoH : 0.156 0.701 -0.223 0.397 MuHd_075 : 8.706 14.744 3.670 3.768 MuHd_095 : 18.268 5.584 3.646 3.132 MuHd_100 : 6.725 12.974 2.295 1.642 MuHd_105 : 12.070 18.874 3.759 4.718 Hmax_075 : 18.200 21.350 4.043 6.673 Hmax_095 : 13.900 16.100 2.406 5.500 Hmax_100 : 9.500 18.100 2.428 4.900 Hmax_105 : 21.800 26.400 4.763 8.500 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.3179 0.6821 DFMC : 0.6198 0.3802
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 376 PCHAS_0412900 MLIYRFLFFLSIIASVRYYYCDAKVCVNDISSQLLKNISFKNSVRNDGKTKGQNTCYNFRKEKKNILKKKIKKKYSLNNS 80 KGYTQKKKKYNLYFLNSSKFTDIKENVKAWFNLDYIENHYAYSYIKSFARIPPITKIYLINTFILSVLIHLNKNVYKYIL 160 YDFDKIFKNGEIWRLVTPYFYIGNLYLQYILMFNYLNIYMSSVEIAHYKNPEDFLIFLTYGYISNIFFTIIASMYNENVM 240 DLKKHIRKIRSLITAMPSTNNKDDNKFVQKETYNHLGYVFSTYILYYWSRINEGSLINCFDLFFIKAEYIPFFFVIQNIL 320 LYNEFSFFEVASILSSYTFFTYEKYLKSNFLRALFRGFLKFIRVYPMYNMYKEEYE 400 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 .........P...................................................................... 320 ........................................................ 400 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0412900 5 --MLIYR|FL 0.078 . PCHAS_0412900 17 SIIASVR|YY 0.082 . PCHAS_0412900 24 YYYCDAK|VC 0.056 . PCHAS_0412900 36 ISSQLLK|NI 0.075 . PCHAS_0412900 41 LKNISFK|NS 0.067 . PCHAS_0412900 45 SFKNSVR|ND 0.108 . PCHAS_0412900 49 SVRNDGK|TK 0.074 . PCHAS_0412900 51 RNDGKTK|GQ 0.068 . PCHAS_0412900 60 NTCYNFR|KE 0.071 . PCHAS_0412900 61 TCYNFRK|EK 0.097 . PCHAS_0412900 63 YNFRKEK|KN 0.108 . PCHAS_0412900 64 NFRKEKK|NI 0.099 . PCHAS_0412900 68 EKKNILK|KK 0.064 . PCHAS_0412900 69 KKNILKK|KI 0.119 . PCHAS_0412900 70 KNILKKK|IK 0.112 . PCHAS_0412900 72 ILKKKIK|KK 0.066 . PCHAS_0412900 73 LKKKIKK|KY 0.096 . PCHAS_0412900 74 KKKIKKK|YS 0.121 . PCHAS_0412900 81 YSLNNSK|GY 0.065 . PCHAS_0412900 86 SKGYTQK|KK 0.065 . PCHAS_0412900 87 KGYTQKK|KK 0.088 . PCHAS_0412900 88 GYTQKKK|KY 0.095 . PCHAS_0412900 89 YTQKKKK|YN 0.123 . PCHAS_0412900 99 YFLNSSK|FT 0.075 . PCHAS_0412900 104 SKFTDIK|EN 0.062 . PCHAS_0412900 108 DIKENVK|AW 0.058 . PCHAS_0412900 126 YAYSYIK|SF 0.077 . PCHAS_0412900 130 YIKSFAR|IP 0.075 . PCHAS_0412900 136 RIPPITK|IY 0.054 . PCHAS_0412900 153 VLIHLNK|NV 0.071 . PCHAS_0412900 157 LNKNVYK|YI 0.076 . PCHAS_0412900 165 ILYDFDK|IF 0.070 . PCHAS_0412900 168 DFDKIFK|NG 0.056 . PCHAS_0412900 174 KNGEIWR|LV 0.136 . PCHAS_0412900 209 VEIAHYK|NP 0.069 . PCHAS_0412900 243 ENVMDLK|KH 0.062 . PCHAS_0412900 244 NVMDLKK|HI 0.111 . PCHAS_0412900 247 DLKKHIR|KI 0.102 . PCHAS_0412900 248 LKKHIRK|IR 0.092 . PCHAS_0412900 250 KHIRKIR|SL 0.605 *ProP* PCHAS_0412900 262 MPSTNNK|DD 0.081 . PCHAS_0412900 266 NNKDDNK|FV 0.087 . PCHAS_0412900 270 DNKFVQK|ET 0.072 . PCHAS_0412900 290 ILYYWSR|IN 0.106 . PCHAS_0412900 306 FDLFFIK|AE 0.056 . PCHAS_0412900 344 TFFTYEK|YL 0.059 . PCHAS_0412900 347 TYEKYLK|SN 0.062 . PCHAS_0412900 352 LKSNFLR|AL 0.151 . PCHAS_0412900 356 FLRALFR|GF 0.102 . PCHAS_0412900 360 LFRGFLK|FI 0.069 . PCHAS_0412900 363 GFLKFIR|VY 0.070 . PCHAS_0412900 372 PMYNMYK|EE 0.061 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0412900 ATGCTTATATACAGATTTTTATTTTTCTTAAGCATAATTGCTAGTGTGAGGTACTATTAT TGTGACGCTAAAGTTTGTGTAAATGATATTTCAAGTCAGTTGTTAAAAAATATTTCGTTT AAAAATAGTGTAAGAAATGATGGCAAGACCAAAGGGCAAAATACATGCTATAATTTTAGG AAGGAGAAAAAAAACATATTGAAAAAAAAAATTAAAAAAAAATATTCATTGAATAATTCT AAAGGATATACACAAAAAAAAAAAAAATATAATTTATATTTTTTAAATTCATCCAAATTT ACTGATATAAAAGAAAATGTTAAAGCATGGTTTAATTTGGACTATATAGAAAATCATTAT GCTTATTCCTATATAAAATCTTTTGCTCGAATCCCCCCTATTACAAAAATATATTTGATA AACACCTTTATATTAAGTGTTTTAATTCATTTAAATAAAAATGTTTATAAATATATTTTA TATGATTTTGATAAAATTTTTAAAAACGGGGAAATATGGAGATTAGTAACACCCTATTTT TATATAGGAAATTTATATTTACAATATATTTTAATGTTTAATTATTTAAATATATATATG TCATCCGTTGAAATAGCACATTATAAAAACCCAGAAGATTTTTTAATTTTTCTTACATAT GGGTATATATCAAATATTTTTTTTACTATAATTGCCAGTATGTACAATGAAAATGTTATG GACTTGAAAAAGCATATACGCAAAATAAGAAGTTTAATTACTGCTATGCCTTCTACGAAT AATAAAGACGATAACAAATTTGTACAAAAAGAAACATATAATCATTTAGGTTATGTTTTT TCAACATACATATTATATTATTGGAGCCGAATAAATGAAGGTTCTTTAATTAATTGTTTT GATTTATTTTTTATTAAAGCAGAGTATATCCCTTTTTTTTTTGTTATACAAAATATTTTA TTATATAACGAGTTTTCCTTTTTCGAAGTTGCTTCCATATTATCAAGTTATACTTTTTTT ACATATGAAAAATATTTAAAATCAAATTTTTTAAGGGCTTTATTCAGAGGCTTCCTTAAA TTTATTCGAGTCTATCCTATGTACAATATGTACAAAGAGGAGTATGAGTAA
  • Download Fasta

  • Fasta :-

    MLIYRFLFFLSIIASVRYYYCDAKVCVNDISSQLLKNISFKNSVRNDGKTKGQNTCYNFR KEKKNILKKKIKKKYSLNNSKGYTQKKKKYNLYFLNSSKFTDIKENVKAWFNLDYIENHY AYSYIKSFARIPPITKIYLINTFILSVLIHLNKNVYKYILYDFDKIFKNGEIWRLVTPYF YIGNLYLQYILMFNYLNIYMSSVEIAHYKNPEDFLIFLTYGYISNIFFTIIASMYNENVM DLKKHIRKIRSLITAMPSTNNKDDNKFVQKETYNHLGYVFSTYILYYWSRINEGSLINCF DLFFIKAEYIPFFFVIQNILLYNEFSFFEVASILSSYTFFTYEKYLKSNFLRALFRGFLK FIRVYPMYNMYKEEYE

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PCHAS_041290      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India