PCHAS_0417900 | signal peptidase complex subunit 3, putative

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  • Fasta :-

    >PCHAS_0417900 MDTLLNRINIIFYSMALCLVTLCLFNYGSSFYLFDENNIVTNVKVKSVKRLVYNKYINGD EAVLSLDLSYDMTKAFNWNLKQLFVYVLVTYETPEKAENEVIVQDYIINNPDDAIRADKN FITKYSLKDYYNGLRSNLINVQVCYKYMPIIGISRTYHGAKTSYMMPDEYFDTMPAKYPL YYPDK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0417900.fa Sequence name : PCHAS_0417900 Sequence length : 185 VALUES OF COMPUTED PARAMETERS Coef20 : 4.680 CoefTot : 0.105 ChDiff : -1 ZoneTo : 34 KR : 1 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.924 2.241 0.470 0.705 MesoH : -0.652 0.440 -0.385 0.220 MuHd_075 : 20.777 11.222 5.401 3.524 MuHd_095 : 23.589 19.115 5.953 5.720 MuHd_100 : 24.270 20.949 7.590 5.531 MuHd_105 : 22.909 21.349 7.873 4.861 Hmax_075 : 14.900 20.300 5.522 7.940 Hmax_095 : 20.500 23.100 4.018 7.490 Hmax_100 : 22.300 25.100 5.557 7.940 Hmax_105 : 5.337 13.800 2.126 3.300 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9334 0.0666 DFMC : 0.9086 0.0914
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 185 PCHAS_0417900 MDTLLNRINIIFYSMALCLVTLCLFNYGSSFYLFDENNIVTNVKVKSVKRLVYNKYINGDEAVLSLDLSYDMTKAFNWNL 80 KQLFVYVLVTYETPEKAENEVIVQDYIINNPDDAIRADKNFITKYSLKDYYNGLRSNLINVQVCYKYMPIIGISRTYHGA 160 KTSYMMPDEYFDTMPAKYPLYYPDK 240 ................................................................................ 80 ................................................................................ 160 ......................... 240 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0417900 7 MDTLLNR|IN 0.075 . PCHAS_0417900 44 NIVTNVK|VK 0.061 . PCHAS_0417900 46 VTNVKVK|SV 0.115 . PCHAS_0417900 49 VKVKSVK|RL 0.059 . PCHAS_0417900 50 KVKSVKR|LV 0.212 . PCHAS_0417900 55 KRLVYNK|YI 0.077 . PCHAS_0417900 74 LSYDMTK|AF 0.072 . PCHAS_0417900 81 AFNWNLK|QL 0.070 . PCHAS_0417900 96 TYETPEK|AE 0.063 . PCHAS_0417900 116 NPDDAIR|AD 0.075 . PCHAS_0417900 119 DAIRADK|NF 0.111 . PCHAS_0417900 124 DKNFITK|YS 0.064 . PCHAS_0417900 128 ITKYSLK|DY 0.083 . PCHAS_0417900 135 DYYNGLR|SN 0.085 . PCHAS_0417900 146 NVQVCYK|YM 0.065 . PCHAS_0417900 155 PIIGISR|TY 0.082 . PCHAS_0417900 161 RTYHGAK|TS 0.068 . PCHAS_0417900 177 FDTMPAK|YP 0.063 . PCHAS_0417900 185 PLYYPDK|-- 0.067 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0417900 ATGGATACCCTTCTAAATAGAATAAATATAATTTTTTATTCGATGGCATTATGTTTAGTT ACCCTATGTCTTTTTAATTATGGATCATCATTTTATTTATTTGATGAAAATAATATAGTA ACTAATGTAAAAGTGAAAAGTGTAAAAAGATTAGTTTATAATAAATATATAAATGGTGAT GAAGCAGTTTTATCTTTAGATTTATCATATGATATGACAAAAGCATTTAATTGGAATTTA AAACAGTTATTTGTATATGTTTTAGTAACATATGAAACTCCTGAAAAGGCAGAAAATGAA GTTATTGTACAAGACTATATTATAAATAACCCCGATGATGCAATAAGAGCAGATAAAAAT TTTATTACAAAATATTCCCTTAAAGATTATTATAATGGATTAAGAAGTAATTTAATAAAT GTACAAGTATGTTATAAATATATGCCGATAATCGGAATATCACGAACTTATCACGGGGCC AAAACGTCGTATATGATGCCTGATGAGTATTTTGACACTATGCCAGCTAAATATCCATTA TATTACCCTGACAAATAG
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_041790047 SVKVKSVKRL0.994unspPCHAS_0417900126 SITKYSLKDY0.993unsp

PCHAS_041790      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India