PCHAS_0504200 | autophagy-related protein 8, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:0020011      GO:0031410      

  • Curated_GO_Components:  apicoplast      cytoplasmic vesicle      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PCHAS_0504200OTHER0.9982290.0003300.001441
No Results

  • Fasta :-

    >PCHAS_0504200 MPSLKEEVPFESRVAETHKIRAKYPNRIPVVCEKAHRSNLPEIEKKKFLVPMNMLVGEFK FVLHQHINQSAYGSNMKLFREKTIYLFVNNIIPKTGLLMQELYEMYKDEDGYLYLEYSCE SCFG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0504200.fa Sequence name : PCHAS_0504200 Sequence length : 124 VALUES OF COMPUTED PARAMETERS Coef20 : 3.440 CoefTot : -0.132 ChDiff : 1 ZoneTo : 5 KR : 1 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.676 1.182 -0.103 0.509 MesoH : -1.045 -0.024 -0.602 0.145 MuHd_075 : 19.381 15.429 5.556 3.450 MuHd_095 : 11.592 11.212 3.666 3.750 MuHd_100 : 17.755 15.128 3.889 4.877 MuHd_105 : 20.352 16.984 3.969 5.219 Hmax_075 : 2.683 8.283 -1.644 3.080 Hmax_095 : -5.400 3.900 -3.256 1.800 Hmax_100 : -0.200 4.200 -3.003 2.140 Hmax_105 : 3.150 6.767 -1.019 2.835 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9221 0.0779 DFMC : 0.9330 0.0670
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 124 PCHAS_0504200 MPSLKEEVPFESRVAETHKIRAKYPNRIPVVCEKAHRSNLPEIEKKKFLVPMNMLVGEFKFVLHQHINQSAYGSNMKLFR 80 EKTIYLFVNNIIPKTGLLMQELYEMYKDEDGYLYLEYSCESCFG 160 ................................................................................ 80 ............................................ 160 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0504200 5 --MPSLK|EE 0.058 . PCHAS_0504200 13 EVPFESR|VA 0.078 . PCHAS_0504200 19 RVAETHK|IR 0.062 . PCHAS_0504200 21 AETHKIR|AK 0.092 . PCHAS_0504200 23 THKIRAK|YP 0.074 . PCHAS_0504200 27 RAKYPNR|IP 0.084 . PCHAS_0504200 34 IPVVCEK|AH 0.068 . PCHAS_0504200 37 VCEKAHR|SN 0.102 . PCHAS_0504200 45 NLPEIEK|KK 0.057 . PCHAS_0504200 46 LPEIEKK|KF 0.093 . PCHAS_0504200 47 PEIEKKK|FL 0.117 . PCHAS_0504200 60 MLVGEFK|FV 0.082 . PCHAS_0504200 77 AYGSNMK|LF 0.058 . PCHAS_0504200 80 SNMKLFR|EK 0.113 . PCHAS_0504200 82 MKLFREK|TI 0.066 . PCHAS_0504200 94 VNNIIPK|TG 0.059 . PCHAS_0504200 107 ELYEMYK|DE 0.069 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0504200 ATGCCATCATTAAAAGAAGAAGTCCCCTTTGAAAGTAGAGTTGCAGAGACTCATAAAATT CGAGCGAAATACCCAAACAGAATTCCAGTGGTATGTGAAAAAGCACATAGATCAAATTTA CCCGAAATTGAAAAAAAGAAATTTCTTGTACCTATGAATATGTTAGTAGGTGAATTTAAA TTTGTTTTACATCAACATATAAATCAAAGTGCGTATGGAAGTAATATGAAATTGTTTAGA GAAAAAACTATATATTTATTTGTCAATAATATTATTCCCAAAACAGGATTGTTAATGCAA GAATTGTATGAAATGTATAAAGACGAAGACGGATATTTATATCTTGAGTACAGTTGTGAA AGTTGTTTTGGATAA
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  • Fasta :-

    MPSLKEEVPFESRVAETHKIRAKYPNRIPVVCEKAHRSNLPEIEKKKFLVPMNMLVGEFK FVLHQHINQSAYGSNMKLFREKTIYLFVNNIIPKTGLLMQELYEMYKDEDGYLYLEYSCE SCFG

  • title: Atg7 interaction site
  • coordinates: R27,K45,F48,G57,E58,K60,F61,V62,H64,Q65,H66,E81,T83,I84,Y85,F87,N90,I91,K94,T95,G96
No Results
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No Results

PCHAS_050420      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India