PCHAS_0613800 | conserved protein, unknown function

  • Computed_GO_Component_IDs:        

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  • Computed_GO_Function_IDs:        

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  • Curated_GO_Component_IDs:        

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No Results
No Results

  • Fasta :-

    >PCHAS_0613800 MLAKKIFLQNFHYLRVVKNMPLKVMDRHIIDPRIFYSSDQSRKKVAVDKGGNGRSGNERN DNDGSSSSPIDETNLIDEEGKKRKNFSEFINMNENKEKGYFPNMVLKILSDKNSDEEKKR LINEYKECISKHFEVENEINLNSKKKKNNKLQFDDIFASLYLCYVEKIYDLNFLTNLSNS FDILYKFEKNSNDRHQSSRQDHIITKDNINYFSMIFYYFSFLNIKNDILYMNIRNYIINN EVEPIIIYKYLESLCFIKGLYDHNKTYEHISPIVEIIMEEFYNFNNYFLLNILHFLHTLN FIDKNVFSFLSKKLNKNIYSQNANYYDLCMLSRAYALYKNYNITFNKYLCNDIIANITKY EDKFQNEDTTIGENITLSKQNINDNSEQIDNSKDMVKKNISTDNNNETDVYIDEIKNIDR ANYCMFKNSLYNDGINFYSFFVNSKTENKEKYKKETIMDISFTPSNNSDNNFEKSKVSGN CTWNDLFNDDVEHKNKNINNEPFINIKNENMNDDKIVSMHNEYLKENILYEFSHTQLVNI FKNINEIFNKDIIKIDNTNISEDIDIYINNHDENRIVEYKKKLLFIDNYYIGHIFYIVDS LLSLNVHHTNKKDFINLENKVFNLIKNNENYIITNFDSNEIKSVLIFLSQTNKIYKESFI YCLTHRIADLYINNLCTAKTLAIYLHNLLHFTKHKVSKKNRFNHTIRNVIYNTYPWLNSN KNTHNVQTTNSINSEITNIYNSIKVKNYSLLQLLSIYICKNVYFMSLSTLTSILRSFSYL SFNDVNFYNVFIPLFMKHMDNLANVDILNITQAYNKRKIQNKYFYYLLSKVYQSKSTEKI KNLDPPIKLIG
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0613800.fa Sequence name : PCHAS_0613800 Sequence length : 851 VALUES OF COMPUTED PARAMETERS Coef20 : 4.185 CoefTot : -0.760 ChDiff : 5 ZoneTo : 25 KR : 5 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.029 1.253 0.059 0.564 MesoH : -0.096 0.568 -0.300 0.286 MuHd_075 : 43.155 29.509 12.236 10.172 MuHd_095 : 21.989 13.574 6.200 4.812 MuHd_100 : 30.667 19.020 9.537 7.175 MuHd_105 : 36.031 21.485 10.123 8.214 Hmax_075 : 15.050 17.383 1.143 6.533 Hmax_095 : 8.400 11.813 -1.183 3.798 Hmax_100 : 8.300 13.300 0.831 4.900 Hmax_105 : 3.237 8.000 -1.200 3.054 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0947 0.9053 DFMC : 0.1150 0.8850 This protein is probably imported in mitochondria. f(Ser) = 0.0000 f(Arg) = 0.0400 CMi = 0.00000 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 851 PCHAS_0613800 MLAKKIFLQNFHYLRVVKNMPLKVMDRHIIDPRIFYSSDQSRKKVAVDKGGNGRSGNERNDNDGSSSSPIDETNLIDEEG 80 KKRKNFSEFINMNENKEKGYFPNMVLKILSDKNSDEEKKRLINEYKECISKHFEVENEINLNSKKKKNNKLQFDDIFASL 160 YLCYVEKIYDLNFLTNLSNSFDILYKFEKNSNDRHQSSRQDHIITKDNINYFSMIFYYFSFLNIKNDILYMNIRNYIINN 240 EVEPIIIYKYLESLCFIKGLYDHNKTYEHISPIVEIIMEEFYNFNNYFLLNILHFLHTLNFIDKNVFSFLSKKLNKNIYS 320 QNANYYDLCMLSRAYALYKNYNITFNKYLCNDIIANITKYEDKFQNEDTTIGENITLSKQNINDNSEQIDNSKDMVKKNI 400 STDNNNETDVYIDEIKNIDRANYCMFKNSLYNDGINFYSFFVNSKTENKEKYKKETIMDISFTPSNNSDNNFEKSKVSGN 480 CTWNDLFNDDVEHKNKNINNEPFINIKNENMNDDKIVSMHNEYLKENILYEFSHTQLVNIFKNINEIFNKDIIKIDNTNI 560 SEDIDIYINNHDENRIVEYKKKLLFIDNYYIGHIFYIVDSLLSLNVHHTNKKDFINLENKVFNLIKNNENYIITNFDSNE 640 IKSVLIFLSQTNKIYKESFIYCLTHRIADLYINNLCTAKTLAIYLHNLLHFTKHKVSKKNRFNHTIRNVIYNTYPWLNSN 720 KNTHNVQTTNSINSEITNIYNSIKVKNYSLLQLLSIYICKNVYFMSLSTLTSILRSFSYLSFNDVNFYNVFIPLFMKHMD 800 NLANVDILNITQAYNKRKIQNKYFYYLLSKVYQSKSTEKIKNLDPPIKLIG 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ................................................... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0613800 4 ---MLAK|KI 0.068 . PCHAS_0613800 5 --MLAKK|IF 0.102 . PCHAS_0613800 15 QNFHYLR|VV 0.088 . PCHAS_0613800 18 HYLRVVK|NM 0.088 . PCHAS_0613800 23 VKNMPLK|VM 0.065 . PCHAS_0613800 27 PLKVMDR|HI 0.090 . PCHAS_0613800 33 RHIIDPR|IF 0.084 . PCHAS_0613800 42 YSSDQSR|KK 0.116 . PCHAS_0613800 43 SSDQSRK|KV 0.098 . PCHAS_0613800 44 SDQSRKK|VA 0.135 . PCHAS_0613800 49 KKVAVDK|GG 0.065 . PCHAS_0613800 54 DKGGNGR|SG 0.100 . PCHAS_0613800 59 GRSGNER|ND 0.125 . PCHAS_0613800 81 LIDEEGK|KR 0.054 . PCHAS_0613800 82 IDEEGKK|RK 0.080 . PCHAS_0613800 83 DEEGKKR|KN 0.144 . PCHAS_0613800 84 EEGKKRK|NF 0.114 . PCHAS_0613800 96 INMNENK|EK 0.082 . PCHAS_0613800 98 MNENKEK|GY 0.081 . PCHAS_0613800 107 FPNMVLK|IL 0.086 . PCHAS_0613800 112 LKILSDK|NS 0.066 . PCHAS_0613800 118 KNSDEEK|KR 0.064 . PCHAS_0613800 119 NSDEEKK|RL 0.087 . PCHAS_0613800 120 SDEEKKR|LI 0.197 . PCHAS_0613800 126 RLINEYK|EC 0.067 . PCHAS_0613800 131 YKECISK|HF 0.063 . PCHAS_0613800 144 EINLNSK|KK 0.061 . PCHAS_0613800 145 INLNSKK|KK 0.090 . PCHAS_0613800 146 NLNSKKK|KN 0.135 . PCHAS_0613800 147 LNSKKKK|NN 0.196 . PCHAS_0613800 150 KKKKNNK|LQ 0.069 . PCHAS_0613800 167 YLCYVEK|IY 0.064 . PCHAS_0613800 186 SFDILYK|FE 0.060 . PCHAS_0613800 189 ILYKFEK|NS 0.064 . PCHAS_0613800 194 EKNSNDR|HQ 0.104 . PCHAS_0613800 199 DRHQSSR|QD 0.135 . PCHAS_0613800 206 QDHIITK|DN 0.081 . PCHAS_0613800 225 FSFLNIK|ND 0.055 . PCHAS_0613800 234 ILYMNIR|NY 0.086 . PCHAS_0613800 249 EPIIIYK|YL 0.070 . PCHAS_0613800 258 ESLCFIK|GL 0.072 . PCHAS_0613800 265 GLYDHNK|TY 0.084 . PCHAS_0613800 304 TLNFIDK|NV 0.083 . PCHAS_0613800 312 VFSFLSK|KL 0.068 . PCHAS_0613800 313 FSFLSKK|LN 0.085 . PCHAS_0613800 316 LSKKLNK|NI 0.068 . PCHAS_0613800 333 DLCMLSR|AY 0.074 . PCHAS_0613800 339 RAYALYK|NY 0.065 . PCHAS_0613800 347 YNITFNK|YL 0.066 . PCHAS_0613800 359 IIANITK|YE 0.072 . PCHAS_0613800 363 ITKYEDK|FQ 0.064 . PCHAS_0613800 379 ENITLSK|QN 0.060 . PCHAS_0613800 393 EQIDNSK|DM 0.065 . PCHAS_0613800 397 NSKDMVK|KN 0.060 . PCHAS_0613800 398 SKDMVKK|NI 0.136 . PCHAS_0613800 416 VYIDEIK|NI 0.065 . PCHAS_0613800 420 EIKNIDR|AN 0.084 . PCHAS_0613800 427 ANYCMFK|NS 0.056 . PCHAS_0613800 445 SFFVNSK|TE 0.056 . PCHAS_0613800 449 NSKTENK|EK 0.069 . PCHAS_0613800 451 KTENKEK|YK 0.073 . PCHAS_0613800 453 ENKEKYK|KE 0.065 . PCHAS_0613800 454 NKEKYKK|ET 0.092 . PCHAS_0613800 474 SDNNFEK|SK 0.101 . PCHAS_0613800 476 NNFEKSK|VS 0.068 . PCHAS_0613800 494 NDDVEHK|NK 0.059 . PCHAS_0613800 496 DVEHKNK|NI 0.067 . PCHAS_0613800 507 EPFINIK|NE 0.058 . PCHAS_0613800 515 ENMNDDK|IV 0.078 . PCHAS_0613800 525 MHNEYLK|EN 0.068 . PCHAS_0613800 542 QLVNIFK|NI 0.069 . PCHAS_0613800 550 INEIFNK|DI 0.091 . PCHAS_0613800 554 FNKDIIK|ID 0.061 . PCHAS_0613800 575 NNHDENR|IV 0.144 . PCHAS_0613800 580 NRIVEYK|KK 0.060 . PCHAS_0613800 581 RIVEYKK|KL 0.095 . PCHAS_0613800 582 IVEYKKK|LL 0.094 . PCHAS_0613800 611 NVHHTNK|KD 0.068 . PCHAS_0613800 612 VHHTNKK|DF 0.121 . PCHAS_0613800 620 FINLENK|VF 0.058 . PCHAS_0613800 626 KVFNLIK|NN 0.071 . PCHAS_0613800 642 FDSNEIK|SV 0.124 . PCHAS_0613800 653 FLSQTNK|IY 0.062 . PCHAS_0613800 656 QTNKIYK|ES 0.067 . PCHAS_0613800 666 IYCLTHR|IA 0.094 . PCHAS_0613800 679 NNLCTAK|TL 0.066 . PCHAS_0613800 693 NLLHFTK|HK 0.061 . PCHAS_0613800 695 LHFTKHK|VS 0.064 . PCHAS_0613800 698 TKHKVSK|KN 0.078 . PCHAS_0613800 699 KHKVSKK|NR 0.090 . PCHAS_0613800 701 KVSKKNR|FN 0.227 . PCHAS_0613800 707 RFNHTIR|NV 0.122 . PCHAS_0613800 721 PWLNSNK|NT 0.074 . PCHAS_0613800 744 NIYNSIK|VK 0.066 . PCHAS_0613800 746 YNSIKVK|NY 0.073 . PCHAS_0613800 760 LSIYICK|NV 0.068 . PCHAS_0613800 775 TLTSILR|SF 0.092 . PCHAS_0613800 797 FIPLFMK|HM 0.058 . PCHAS_0613800 816 ITQAYNK|RK 0.056 . PCHAS_0613800 817 TQAYNKR|KI 0.190 . PCHAS_0613800 818 QAYNKRK|IQ 0.102 . PCHAS_0613800 822 KRKIQNK|YF 0.080 . PCHAS_0613800 830 FYYLLSK|VY 0.053 . PCHAS_0613800 835 SKVYQSK|ST 0.110 . PCHAS_0613800 839 QSKSTEK|IK 0.059 . PCHAS_0613800 841 KSTEKIK|NL 0.072 . PCHAS_0613800 848 NLDPPIK|LI 0.074 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0613800 ATGCTGGCAAAAAAAATATTCCTTCAAAATTTTCATTATCTTCGTGTAGTGAAAAATATG CCGCTTAAGGTTATGGACCGGCATATTATAGACCCTCGAATTTTTTATTCTAGCGATCAG TCTCGAAAAAAGGTAGCAGTTGATAAAGGAGGGAATGGAAGAAGTGGAAACGAAAGGAAC GACAACGATGGTAGTAGTTCGAGCCCTATTGATGAAACAAATTTGATCGATGAAGAAGGA AAGAAAAGAAAAAATTTCAGCGAATTTATTAATATGAATGAAAATAAAGAAAAAGGATAT TTCCCAAATATGGTCTTAAAAATTCTAAGTGATAAAAATAGTGACGAAGAAAAAAAGCGT TTAATAAATGAATATAAAGAATGTATAAGTAAACATTTTGAAGTAGAGAATGAAATAAAT TTAAATTCGAAAAAAAAAAAAAATAATAAACTACAATTTGATGATATTTTTGCAAGTCTA TACTTATGTTATGTAGAGAAAATATATGATTTAAACTTTTTAACAAACTTAAGTAACAGT TTTGATATATTATATAAATTTGAAAAAAATTCAAATGATAGACATCAATCAAGTAGACAA GACCATATAATAACCAAAGATAATATAAATTATTTTTCAATGATTTTTTATTATTTTTCT TTTTTAAATATTAAAAATGATATATTATATATGAATATAAGAAATTATATTATTAATAAT GAGGTTGAGCCAATAATAATTTATAAATATTTAGAAAGTCTTTGTTTTATAAAAGGTTTA TATGATCATAATAAAACATATGAACATATTAGTCCAATAGTTGAAATAATAATGGAAGAA TTTTACAATTTTAATAATTATTTTTTATTAAATATTTTACATTTTTTGCACACATTAAAT TTTATAGATAAAAATGTATTTTCTTTTTTATCAAAAAAGTTAAATAAAAATATTTATAGC CAAAACGCAAATTATTATGACTTGTGCATGTTATCTAGAGCATATGCCCTATATAAAAAT TATAACATCACATTTAATAAATATTTATGTAATGATATAATAGCTAATATAACTAAATAT GAAGATAAATTTCAAAATGAAGATACAACAATAGGAGAGAATATAACATTGTCTAAACAA AACATAAATGATAATTCAGAACAAATAGATAACTCAAAAGATATGGTTAAAAAAAATATA TCTACTGATAATAATAATGAAACGGATGTATATATAGATGAAATAAAAAATATTGATAGA GCAAACTATTGTATGTTTAAAAATAGTTTATATAACGATGGAATAAACTTTTATTCATTT TTTGTAAATTCGAAAACTGAAAATAAAGAAAAGTATAAAAAAGAAACTATTATGGATATT AGTTTTACACCATCCAACAACAGTGATAACAATTTTGAAAAGTCAAAAGTTAGTGGCAAT TGTACTTGGAACGACTTATTTAATGATGATGTGGAACATAAAAATAAAAACATAAATAAC GAACCATTTATTAATATTAAAAATGAAAATATGAATGATGATAAAATAGTTAGCATGCAC AATGAATATTTAAAGGAAAATATATTATATGAATTTAGTCATACTCAGCTTGTAAATATT TTTAAAAACATTAACGAAATATTTAATAAAGATATAATAAAAATTGATAATACTAATATT AGTGAAGATATAGACATATATATTAATAATCATGATGAAAATAGAATAGTGGAATATAAA AAAAAATTACTTTTTATTGATAATTATTATATTGGGCATATTTTTTATATAGTTGATTCA TTACTATCATTAAATGTACATCATACTAATAAAAAGGATTTTATAAATTTAGAAAATAAA GTTTTTAATTTAATAAAAAATAATGAAAATTATATTATTACTAATTTTGATAGTAATGAA ATAAAAAGCGTTTTAATATTTTTATCACAAACAAATAAAATTTATAAAGAATCTTTTATT TATTGTCTTACACACAGAATAGCAGACTTATATATTAATAATCTTTGTACTGCAAAAACG CTAGCTATCTATTTACATAATTTATTACATTTTACAAAACATAAAGTTTCAAAAAAAAAC AGATTTAATCATACTATAAGAAATGTTATATATAATACGTATCCATGGTTGAATAGCAAT AAAAACACACACAATGTACAAACAACAAATAGTATAAATAGCGAAATAACAAATATTTAT AACAGCATTAAAGTAAAAAATTATTCGCTTTTACAATTATTATCAATATATATTTGTAAA AATGTTTATTTTATGAGCTTATCAACTTTAACTTCTATACTAAGATCCTTTTCTTATCTC TCATTCAATGACGTCAATTTCTATAACGTTTTTATTCCTTTGTTTATGAAACATATGGAC AATCTAGCCAATGTAGACATTTTAAACATAACACAGGCATATAACAAGCGAAAAATTCAA AATAAATATTTTTATTATTTGCTATCAAAAGTATATCAAAGTAAAAGTACAGAAAAAATA AAAAATCTTGACCCACCAATTAAATTAATTGGCTAG
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  • Fasta :-

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IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_0613800198 SRHQSSRQDH0.991unspPCHAS_0613800198 SRHQSSRQDH0.991unspPCHAS_0613800198 SRHQSSRQDH0.991unspPCHAS_0613800697 SKHKVSKKNR0.996unspPCHAS_061380068 SGSSSSPIDE0.997unspPCHAS_0613800114 SSDKNSDEEK0.995unsp

PCHAS_061380      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India