PCHAS_0618000 | conserved Plasmodium protein, unknown function

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No Results
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  • Fasta :-

    >PCHAS_0618000 MISHFKKNISLKNYISTNSLKQKWIKGNLFFCSYSSSTNNCNLYGVRGKTALLNFHRIPD SVGSIKKIGIHSYNKNNNETKSSNNKERVNLFSEKDKKENSNKTDKKNEQGIIMYYPENS RFPYITVFTILGMIGISSFFKILIYNLKNCDNESDLISQVDKILNYLDNYFIIYNFEENK KNTEYKNGIFNIKYLTSQFFLNENTLQCAVQLFTFFLASCFLEKHYGSLIYIGLFLCGTL FSNITTTLFCDLIKNVESLKFINFALIHPSGSMAFICAFCSIFFKNCAIWKNIPISCSIF IVPFLFSSFYGLLSLYKINKYNLEEANKINNTNTYEDNSSIDKAKFDLENNMIKNVDNDD KKKTVQHVKEDTHKHRNDNFIPYKQNEALNILQNFLIAEKCDSIINKQKKEHVFLNRKIQ NLKKEALRNIDEINNKSEKIFFSLSSAFTDVFGIVLASTLYLFKILK
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0618000.fa Sequence name : PCHAS_0618000 Sequence length : 467 VALUES OF COMPUTED PARAMETERS Coef20 : 4.090 CoefTot : -3.604 ChDiff : 17 ZoneTo : 78 KR : 12 DE : 1 CleavSite : 49 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.188 1.994 0.433 0.789 MesoH : 0.862 1.204 0.041 0.484 MuHd_075 : 40.580 30.393 13.096 9.294 MuHd_095 : 31.903 22.214 11.267 6.816 MuHd_100 : 34.268 24.893 11.310 8.290 MuHd_105 : 39.990 28.461 11.501 9.477 Hmax_075 : 13.767 17.383 1.288 6.568 Hmax_095 : 10.800 10.200 2.449 4.580 Hmax_100 : 14.700 15.700 3.556 6.320 Hmax_105 : 16.700 20.000 4.288 8.080 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0523 0.9477 DFMC : 0.0531 0.9469 This protein is probably imported in chloroplast. f(Ser) = 0.1410 f(Arg) = 0.0256 CMi = 1.33172 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 467 PCHAS_0618000 MISHFKKNISLKNYISTNSLKQKWIKGNLFFCSYSSSTNNCNLYGVRGKTALLNFHRIPDSVGSIKKIGIHSYNKNNNET 80 KSSNNKERVNLFSEKDKKENSNKTDKKNEQGIIMYYPENSRFPYITVFTILGMIGISSFFKILIYNLKNCDNESDLISQV 160 DKILNYLDNYFIIYNFEENKKNTEYKNGIFNIKYLTSQFFLNENTLQCAVQLFTFFLASCFLEKHYGSLIYIGLFLCGTL 240 FSNITTTLFCDLIKNVESLKFINFALIHPSGSMAFICAFCSIFFKNCAIWKNIPISCSIFIVPFLFSSFYGLLSLYKINK 320 YNLEEANKINNTNTYEDNSSIDKAKFDLENNMIKNVDNDDKKKTVQHVKEDTHKHRNDNFIPYKQNEALNILQNFLIAEK 400 CDSIINKQKKEHVFLNRKIQNLKKEALRNIDEINNKSEKIFFSLSSAFTDVFGIVLASTLYLFKILK 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0618000 6 -MISHFK|KN 0.058 . PCHAS_0618000 7 MISHFKK|NI 0.169 . PCHAS_0618000 12 KKNISLK|NY 0.068 . PCHAS_0618000 21 ISTNSLK|QK 0.069 . PCHAS_0618000 23 TNSLKQK|WI 0.107 . PCHAS_0618000 26 LKQKWIK|GN 0.063 . PCHAS_0618000 47 CNLYGVR|GK 0.083 . PCHAS_0618000 49 LYGVRGK|TA 0.065 . PCHAS_0618000 57 ALLNFHR|IP 0.086 . PCHAS_0618000 66 DSVGSIK|KI 0.070 . PCHAS_0618000 67 SVGSIKK|IG 0.083 . PCHAS_0618000 75 GIHSYNK|NN 0.058 . PCHAS_0618000 81 KNNNETK|SS 0.110 . PCHAS_0618000 86 TKSSNNK|ER 0.062 . PCHAS_0618000 88 SSNNKER|VN 0.140 . PCHAS_0618000 95 VNLFSEK|DK 0.064 . PCHAS_0618000 97 LFSEKDK|KE 0.066 . PCHAS_0618000 98 FSEKDKK|EN 0.102 . PCHAS_0618000 103 KKENSNK|TD 0.074 . PCHAS_0618000 106 NSNKTDK|KN 0.087 . PCHAS_0618000 107 SNKTDKK|NE 0.115 . PCHAS_0618000 121 YYPENSR|FP 0.071 . PCHAS_0618000 141 GISSFFK|IL 0.078 . PCHAS_0618000 148 ILIYNLK|NC 0.059 . PCHAS_0618000 162 LISQVDK|IL 0.073 . PCHAS_0618000 180 YNFEENK|KN 0.061 . PCHAS_0618000 181 NFEENKK|NT 0.093 . PCHAS_0618000 186 KKNTEYK|NG 0.075 . PCHAS_0618000 193 NGIFNIK|YL 0.068 . PCHAS_0618000 224 ASCFLEK|HY 0.069 . PCHAS_0618000 254 LFCDLIK|NV 0.069 . PCHAS_0618000 260 KNVESLK|FI 0.072 . PCHAS_0618000 285 FCSIFFK|NC 0.062 . PCHAS_0618000 291 KNCAIWK|NI 0.066 . PCHAS_0618000 317 GLLSLYK|IN 0.057 . PCHAS_0618000 320 SLYKINK|YN 0.063 . PCHAS_0618000 328 NLEEANK|IN 0.057 . PCHAS_0618000 343 DNSSIDK|AK 0.073 . PCHAS_0618000 345 SSIDKAK|FD 0.078 . PCHAS_0618000 354 LENNMIK|NV 0.075 . PCHAS_0618000 361 NVDNDDK|KK 0.057 . PCHAS_0618000 362 VDNDDKK|KT 0.099 . PCHAS_0618000 363 DNDDKKK|TV 0.136 . PCHAS_0618000 369 KTVQHVK|ED 0.062 . PCHAS_0618000 374 VKEDTHK|HR 0.063 . PCHAS_0618000 376 EDTHKHR|ND 0.086 . PCHAS_0618000 384 DNFIPYK|QN 0.067 . PCHAS_0618000 400 NFLIAEK|CD 0.058 . PCHAS_0618000 407 CDSIINK|QK 0.071 . PCHAS_0618000 409 SIINKQK|KE 0.069 . PCHAS_0618000 410 IINKQKK|EH 0.093 . PCHAS_0618000 417 EHVFLNR|KI 0.081 . PCHAS_0618000 418 HVFLNRK|IQ 0.062 . PCHAS_0618000 423 RKIQNLK|KE 0.053 . PCHAS_0618000 424 KIQNLKK|EA 0.109 . PCHAS_0618000 428 LKKEALR|NI 0.102 . PCHAS_0618000 436 IDEINNK|SE 0.066 . PCHAS_0618000 439 INNKSEK|IF 0.066 . PCHAS_0618000 464 STLYLFK|IL 0.058 . PCHAS_0618000 467 YLFKILK|-- 0.060 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0618000 ATGATAAGTCACTTCAAAAAAAACATCTCGTTGAAAAATTATATATCTACAAATAGTTTG AAGCAAAAATGGATTAAGGGGAATTTGTTTTTTTGTTCATATAGTTCTTCGACAAATAAT TGTAATTTATATGGAGTGAGGGGAAAAACAGCATTATTAAATTTCCATAGGATACCAGAT TCTGTGGGTAGTATCAAGAAAATTGGGATACACAGTTATAATAAAAATAATAATGAAACT AAGAGCAGTAATAATAAAGAGCGTGTAAATTTATTTAGTGAAAAAGACAAAAAAGAGAAC TCTAATAAAACTGATAAGAAAAATGAACAGGGCATTATTATGTATTATCCAGAAAACTCA AGATTTCCATATATAACGGTTTTTACGATTTTAGGAATGATAGGAATTTCATCTTTCTTC AAAATTTTAATTTATAACTTAAAGAATTGTGATAATGAAAGCGATTTAATATCACAAGTA GATAAAATATTAAACTATTTGGATAACTACTTTATTATATATAATTTTGAAGAAAATAAA AAAAATACAGAATATAAAAATGGCATATTTAATATAAAATATTTAACATCACAATTTTTT TTAAATGAAAATACACTTCAATGCGCAGTTCAATTATTTACGTTTTTTCTAGCTTCCTGC TTCCTTGAAAAGCATTATGGATCTTTAATATATATTGGATTATTTTTATGTGGTACCTTG TTTTCAAACATTACCACTACCTTATTTTGTGATCTTATTAAGAATGTAGAATCATTAAAG TTTATTAACTTTGCCCTTATACACCCATCTGGATCGATGGCCTTTATATGTGCATTTTGT TCCATTTTTTTCAAAAATTGTGCTATATGGAAAAATATACCAATCAGCTGTTCTATATTC ATCGTACCATTTTTATTCTCAAGCTTTTATGGGCTCTTATCATTGTATAAAATTAATAAG TATAATTTAGAAGAAGCAAATAAGATAAATAACACAAACACATATGAAGACAATAGTTCG ATTGACAAAGCAAAATTTGATTTAGAAAATAATATGATTAAAAATGTTGATAACGATGAT AAAAAAAAGACTGTGCAGCATGTAAAGGAAGATACACATAAACATAGAAATGATAATTTC ATTCCTTATAAACAAAATGAAGCTCTAAATATATTACAAAATTTTTTAATAGCTGAGAAA TGTGATTCAATAATAAATAAACAGAAAAAAGAACATGTTTTTTTAAATAGAAAAATCCAA AACTTAAAAAAAGAAGCATTAAGAAATATTGATGAAATAAATAATAAATCTGAAAAAATA TTTTTTAGTCTCTCTTCTGCATTTACAGATGTATTTGGTATTGTCTTAGCATCAACACTT TATTTATTCAAAATTTTGAAATGA
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  • Fasta :-

    No Results
    No Results
No Results
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IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_061800093 SVNLFSEKDK0.997unspPCHAS_0618000339 SYEDNSSIDK0.995unsp

PCHAS_061800      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India