PCHAS_0627400 | lysophospholipase, putative

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  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
PCHAS_0627400OTHER0.9999420.0000080.000051
No Results

  • Fasta :-

    >PCHAS_0627400 MEEIELNDGESRSTTVSKLDGDPKTGWLRNKKGLLLKTYAWIVQNPIGNVLLIHGFRAHT RLAFMRINLQMPNNNEDLVVDSDNYYIYKDSWIEKFNQNGYSVYALDLQGHGESQAWKNI KGDFSSFDDLVDDVIQYMNHIQDEIENDNKTDDESHNVLATKKKKLPMYVVGYSMGGNIV LRALQLLNKKKRSKNKAKNSNNYKKSKKMLCNSNNINETGNDMYDMNNSSDYGSDKSGPS TYTMASASSSDKHLGYYNLDKFNIKGCVSLSSMLKLNETRNAGNNSIKYLYLPVAGFLSL VAPNAKRPSGSGYKQFEYITNTYKYDKFRNPSGTKFKHVYELLKATVTVNCNINYMPKDI PVLFVHSTDDSVCCLEGTVSFHSKAKIEKKDIHIVEDMDHAVTAAPGNEEILNKIIDWIY DLRSNNEDKKENEI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0627400.fa Sequence name : PCHAS_0627400 Sequence length : 434 VALUES OF COMPUTED PARAMETERS Coef20 : 3.438 CoefTot : 0.000 ChDiff : 1 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.171 1.435 0.092 0.588 MesoH : -0.744 0.056 -0.471 0.124 MuHd_075 : 27.427 13.432 6.562 5.191 MuHd_095 : 9.280 10.507 4.325 2.316 MuHd_100 : 2.757 5.990 1.948 1.609 MuHd_105 : 14.869 5.400 3.412 2.651 Hmax_075 : -9.100 -2.800 -4.572 0.350 Hmax_095 : -4.725 1.100 -3.047 1.295 Hmax_100 : -8.800 -1.000 -3.618 0.840 Hmax_105 : -4.700 -0.233 -3.618 1.190 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9382 0.0618 DFMC : 0.9499 0.0501
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 434 PCHAS_0627400 MEEIELNDGESRSTTVSKLDGDPKTGWLRNKKGLLLKTYAWIVQNPIGNVLLIHGFRAHTRLAFMRINLQMPNNNEDLVV 80 DSDNYYIYKDSWIEKFNQNGYSVYALDLQGHGESQAWKNIKGDFSSFDDLVDDVIQYMNHIQDEIENDNKTDDESHNVLA 160 TKKKKLPMYVVGYSMGGNIVLRALQLLNKKKRSKNKAKNSNNYKKSKKMLCNSNNINETGNDMYDMNNSSDYGSDKSGPS 240 TYTMASASSSDKHLGYYNLDKFNIKGCVSLSSMLKLNETRNAGNNSIKYLYLPVAGFLSLVAPNAKRPSGSGYKQFEYIT 320 NTYKYDKFRNPSGTKFKHVYELLKATVTVNCNINYMPKDIPVLFVHSTDDSVCCLEGTVSFHSKAKIEKKDIHIVEDMDH 400 AVTAAPGNEEILNKIIDWIYDLRSNNEDKKENEI 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .................................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0627400 12 LNDGESR|ST 0.114 . PCHAS_0627400 18 RSTTVSK|LD 0.074 . PCHAS_0627400 24 KLDGDPK|TG 0.054 . PCHAS_0627400 29 PKTGWLR|NK 0.069 . PCHAS_0627400 31 TGWLRNK|KG 0.056 . PCHAS_0627400 32 GWLRNKK|GL 0.207 . PCHAS_0627400 37 KKGLLLK|TY 0.064 . PCHAS_0627400 57 LLIHGFR|AH 0.080 . PCHAS_0627400 61 GFRAHTR|LA 0.113 . PCHAS_0627400 66 TRLAFMR|IN 0.114 . PCHAS_0627400 89 DNYYIYK|DS 0.074 . PCHAS_0627400 95 KDSWIEK|FN 0.080 . PCHAS_0627400 118 GESQAWK|NI 0.082 . PCHAS_0627400 121 QAWKNIK|GD 0.076 . PCHAS_0627400 150 EIENDNK|TD 0.058 . PCHAS_0627400 162 HNVLATK|KK 0.057 . PCHAS_0627400 163 NVLATKK|KK 0.073 . PCHAS_0627400 164 VLATKKK|KL 0.110 . PCHAS_0627400 165 LATKKKK|LP 0.096 . PCHAS_0627400 182 GGNIVLR|AL 0.084 . PCHAS_0627400 189 ALQLLNK|KK 0.057 . PCHAS_0627400 190 LQLLNKK|KR 0.069 . PCHAS_0627400 191 QLLNKKK|RS 0.090 . PCHAS_0627400 192 LLNKKKR|SK 0.492 . PCHAS_0627400 194 NKKKRSK|NK 0.063 . PCHAS_0627400 196 KKRSKNK|AK 0.071 . PCHAS_0627400 198 RSKNKAK|NS 0.082 . PCHAS_0627400 204 KNSNNYK|KS 0.076 . PCHAS_0627400 205 NSNNYKK|SK 0.177 . PCHAS_0627400 207 NNYKKSK|KM 0.062 . PCHAS_0627400 208 NYKKSKK|ML 0.120 . PCHAS_0627400 236 SDYGSDK|SG 0.076 . PCHAS_0627400 252 SASSSDK|HL 0.086 . PCHAS_0627400 261 GYYNLDK|FN 0.075 . PCHAS_0627400 265 LDKFNIK|GC 0.060 . PCHAS_0627400 275 SLSSMLK|LN 0.066 . PCHAS_0627400 280 LKLNETR|NA 0.089 . PCHAS_0627400 288 AGNNSIK|YL 0.074 . PCHAS_0627400 306 LVAPNAK|RP 0.064 . PCHAS_0627400 307 VAPNAKR|PS 0.198 . PCHAS_0627400 314 PSGSGYK|QF 0.067 . PCHAS_0627400 324 YITNTYK|YD 0.058 . PCHAS_0627400 327 NTYKYDK|FR 0.067 . PCHAS_0627400 329 YKYDKFR|NP 0.100 . PCHAS_0627400 335 RNPSGTK|FK 0.064 . PCHAS_0627400 337 PSGTKFK|HV 0.106 . PCHAS_0627400 344 HVYELLK|AT 0.064 . PCHAS_0627400 358 NINYMPK|DI 0.080 . PCHAS_0627400 384 TVSFHSK|AK 0.092 . PCHAS_0627400 386 SFHSKAK|IE 0.073 . PCHAS_0627400 389 SKAKIEK|KD 0.071 . PCHAS_0627400 390 KAKIEKK|DI 0.266 . PCHAS_0627400 414 NEEILNK|II 0.073 . PCHAS_0627400 423 DWIYDLR|SN 0.088 . PCHAS_0627400 429 RSNNEDK|KE 0.070 . PCHAS_0627400 430 SNNEDKK|EN 0.122 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0627400 ATGGAAGAAATTGAATTGAATGATGGTGAATCAAGAAGTACTACAGTAAGTAAATTAGAT GGAGATCCTAAGACAGGTTGGTTACGTAATAAAAAGGGTTTACTTTTAAAAACATACGCG TGGATAGTTCAAAACCCTATAGGAAATGTATTGTTAATACATGGATTTCGAGCTCATACT CGATTAGCTTTTATGAGAATAAATTTACAAATGCCAAATAACAATGAAGACTTAGTAGTA GATAGTGATAATTACTATATTTATAAAGATAGTTGGATTGAAAAATTTAATCAAAATGGC TATTCAGTATATGCACTAGATTTGCAAGGACATGGAGAATCGCAAGCATGGAAAAATATA AAAGGCGATTTTAGTTCTTTTGATGATCTAGTTGATGATGTAATACAATATATGAATCAC ATTCAAGATGAAATCGAAAATGATAATAAAACAGATGATGAATCTCATAATGTATTGGCA ACTAAAAAAAAAAAACTTCCTATGTATGTTGTTGGATACTCGATGGGAGGAAATATTGTT TTAAGAGCACTACAATTATTAAATAAAAAAAAAAGAAGTAAAAATAAGGCGAAGAATTCA AATAACTATAAAAAATCAAAAAAAATGTTATGCAACTCTAATAATATTAATGAAACTGGT AATGATATGTATGATATGAATAATTCTAGTGATTATGGTTCAGATAAATCCGGTCCTAGT ACTTATACTATGGCAAGTGCTAGTTCTAGTGACAAACATCTAGGATACTATAATTTAGAT AAATTCAATATTAAAGGTTGTGTATCTTTATCTAGTATGCTTAAATTAAATGAAACACGA AATGCTGGAAATAATTCAATTAAGTATTTGTATTTACCTGTAGCAGGCTTCCTATCTCTT GTCGCGCCTAATGCAAAACGTCCGTCGGGTTCAGGTTATAAACAGTTTGAATATATTACT AATACATATAAATATGATAAATTTAGAAATCCTAGTGGAACAAAATTTAAACATGTATAT GAACTTCTAAAAGCAACGGTCACAGTGAACTGTAATATTAATTATATGCCAAAAGATATT CCTGTATTATTTGTGCATTCAACAGATGATAGTGTTTGTTGTTTGGAAGGGACGGTTTCA TTTCATAGTAAAGCGAAAATTGAAAAAAAAGATATACATATTGTTGAGGATATGGATCAT GCTGTAACGGCAGCACCAGGTAATGAAGAAATTTTAAACAAAATTATTGATTGGATTTAT GATTTAAGAAGTAATAACGAAGACAAAAAAGAAAATGAAATATAA
  • Download Fasta

  • Fasta :-

    MEEIELNDGESRSTTVSKLDGDPKTGWLRNKKGLLLKTYAWIVQNPIGNVLLIHGFRAHT RLAFMRINLQMPNNNEDLVVDSDNYYIYKDSWIEKFNQNGYSVYALDLQGHGESQAWKNI KGDFSSFDDLVDDVIQYMNHIQDEIENDNKTDDESHNVLATKKKKLPMYVVGYSMGGNIV LRALQLLNKKKRSKNKAKNSNNYKKSKKMLCNSNNINETGNDMYDMNNSSDYGSDKSGPS TYTMASASSSDKHLGYYNLDKFNIKGCVSLSSMLKLNETRNAGNNSIKYLYLPVAGFLSL VAPNAKRPSGSGYKQFEYITNTYKYDKFRNPSGTKFKHVYELLKATVTVNCNINYMPKDI PVLFVHSTDDSVCCLEGTVSFHSKAKIEKKDIHIVEDMDHAVTAAPGNEEILNKIIDWIY DLRSNNEDKKENEI

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_0627400234 SSDYGSDKSG0.995unspPCHAS_0627400234 SSDYGSDKSG0.995unspPCHAS_0627400234 SSDYGSDKSG0.995unspPCHAS_0627400248 SMASASSSDK0.992unspPCHAS_062740017 SSTTVSKLDG0.996unspPCHAS_0627400125 SKGDFSSFDD0.992unsp

PCHAS_130010      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India