PCHAS_0725000 | ubiquitin carboxyl-terminal hydrolase 13, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_0725000OTHER0.9996050.0002240.000171
No Results

  • Fasta :-

    >PCHAS_0725000 MADIKNIISLISSTIKEPTKEDVIYLGECSITGHKDIFEDGIFIDLISFESFSLKNLKVN CARTNNSATVDEHRFYLNIRKKKKVLENVEEKEIKNLNINAEGGFIDNKVYEYEYDYFVY DIKTGIYIKLSELDQTVINICNNIINHKNEIKKDNINKWVNEIKESKYSKDLIQLPNIKI KNENIECAVCKSKKNLWLNLSDGYIGCGRKIYNYGGGCLNNEEGAALKHFYETGKKYPLV VKIGTITKDGNADVFSYADDENDSVIDPYIATHLNNLGINIMNLEKTEITTLEKEIQENK NINFSSILDKGIEPICEQGKVGLINLGNTCYMNCALQVLLSIKGISLKYINNLDNFLSSL DRNNKTHDDLFLQYSKLCYMAYQEDYIKNKKKYVKQFKQECQNKNIKINYDSDVDEENSV SIDPSMFRNCVNRKGNNPFCNNSQQDIYEYLSYIINELIDNENKIFDRLSNCTTNIITET NKRKHGEIDNTEKNSNPYFPFDADTISNIDKSIFNYFTFEIEQTIQSEIGNKSVSSFQNI ILSLDIPIDSSVLKELETKQNEPDKTTGSENIKISLMDCLKNYIKKDNINDYYSEIENKK VHAQKDMKFKSFPPYLFIHLKRFYADENWCAKKINIPIEAHDKIDLEFMRAEKNANEDTN TNTNNTCNNENSDQNILEKYKDVVDSLLDLGFEQDKIIESIKKVKIKNVNNCISYIYGED SVELDTTQSSNKNTEINQNNLDSIISMGISKEVAMASLLINKNDLQKSIDYIFSNMDILT ENKCNAIINSNKCDDGLANYELVASIVHIGNNANSGHYICYIKDNSKWYVFNDNKVGLCN ENLGKDTAYIHLYKRI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0725000.fa Sequence name : PCHAS_0725000 Sequence length : 856 VALUES OF COMPUTED PARAMETERS Coef20 : 4.030 CoefTot : 0.001 ChDiff : -24 ZoneTo : 16 KR : 2 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.965 1.588 0.117 0.536 MesoH : -0.933 0.184 -0.459 0.164 MuHd_075 : 11.431 5.730 2.926 0.652 MuHd_095 : 21.143 22.499 8.452 6.934 MuHd_100 : 29.065 25.220 9.619 8.071 MuHd_105 : 30.612 24.486 9.109 8.065 Hmax_075 : 9.800 8.633 1.365 2.928 Hmax_095 : 7.600 18.200 2.433 6.220 Hmax_100 : 18.700 22.800 4.540 7.760 Hmax_105 : 17.412 19.338 3.900 6.746 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9833 0.0167 DFMC : 0.9866 0.0134
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 856 PCHAS_0725000 MADIKNIISLISSTIKEPTKEDVIYLGECSITGHKDIFEDGIFIDLISFESFSLKNLKVNCARTNNSATVDEHRFYLNIR 80 KKKKVLENVEEKEIKNLNINAEGGFIDNKVYEYEYDYFVYDIKTGIYIKLSELDQTVINICNNIINHKNEIKKDNINKWV 160 NEIKESKYSKDLIQLPNIKIKNENIECAVCKSKKNLWLNLSDGYIGCGRKIYNYGGGCLNNEEGAALKHFYETGKKYPLV 240 VKIGTITKDGNADVFSYADDENDSVIDPYIATHLNNLGINIMNLEKTEITTLEKEIQENKNINFSSILDKGIEPICEQGK 320 VGLINLGNTCYMNCALQVLLSIKGISLKYINNLDNFLSSLDRNNKTHDDLFLQYSKLCYMAYQEDYIKNKKKYVKQFKQE 400 CQNKNIKINYDSDVDEENSVSIDPSMFRNCVNRKGNNPFCNNSQQDIYEYLSYIINELIDNENKIFDRLSNCTTNIITET 480 NKRKHGEIDNTEKNSNPYFPFDADTISNIDKSIFNYFTFEIEQTIQSEIGNKSVSSFQNIILSLDIPIDSSVLKELETKQ 560 NEPDKTTGSENIKISLMDCLKNYIKKDNINDYYSEIENKKVHAQKDMKFKSFPPYLFIHLKRFYADENWCAKKINIPIEA 640 HDKIDLEFMRAEKNANEDTNTNTNNTCNNENSDQNILEKYKDVVDSLLDLGFEQDKIIESIKKVKIKNVNNCISYIYGED 720 SVELDTTQSSNKNTEINQNNLDSIISMGISKEVAMASLLINKNDLQKSIDYIFSNMDILTENKCNAIINSNKCDDGLANY 800 ELVASIVHIGNNANSGHYICYIKDNSKWYVFNDNKVGLCNENLGKDTAYIHLYKRI 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 ........................................................ 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0725000 5 --MADIK|NI 0.061 . PCHAS_0725000 16 LISSTIK|EP 0.066 . PCHAS_0725000 20 TIKEPTK|ED 0.063 . PCHAS_0725000 35 CSITGHK|DI 0.065 . PCHAS_0725000 55 FESFSLK|NL 0.063 . PCHAS_0725000 58 FSLKNLK|VN 0.059 . PCHAS_0725000 63 LKVNCAR|TN 0.092 . PCHAS_0725000 74 ATVDEHR|FY 0.088 . PCHAS_0725000 80 RFYLNIR|KK 0.095 . PCHAS_0725000 81 FYLNIRK|KK 0.067 . PCHAS_0725000 82 YLNIRKK|KK 0.086 . PCHAS_0725000 83 LNIRKKK|KV 0.456 . PCHAS_0725000 84 NIRKKKK|VL 0.163 . PCHAS_0725000 92 LENVEEK|EI 0.062 . PCHAS_0725000 95 VEEKEIK|NL 0.064 . PCHAS_0725000 109 GGFIDNK|VY 0.063 . PCHAS_0725000 123 YFVYDIK|TG 0.056 . PCHAS_0725000 129 KTGIYIK|LS 0.059 . PCHAS_0725000 148 NNIINHK|NE 0.059 . PCHAS_0725000 152 NHKNEIK|KD 0.060 . PCHAS_0725000 153 HKNEIKK|DN 0.144 . PCHAS_0725000 158 KKDNINK|WV 0.091 . PCHAS_0725000 164 KWVNEIK|ES 0.062 . PCHAS_0725000 167 NEIKESK|YS 0.063 . PCHAS_0725000 170 KESKYSK|DL 0.096 . PCHAS_0725000 179 IQLPNIK|IK 0.057 . PCHAS_0725000 181 LPNIKIK|NE 0.071 . PCHAS_0725000 191 IECAVCK|SK 0.077 . PCHAS_0725000 193 CAVCKSK|KN 0.058 . PCHAS_0725000 194 AVCKSKK|NL 0.103 . PCHAS_0725000 209 GYIGCGR|KI 0.090 . PCHAS_0725000 210 YIGCGRK|IY 0.078 . PCHAS_0725000 228 EEGAALK|HF 0.060 . PCHAS_0725000 235 HFYETGK|KY 0.061 . PCHAS_0725000 236 FYETGKK|YP 0.071 . PCHAS_0725000 242 KYPLVVK|IG 0.057 . PCHAS_0725000 248 KIGTITK|DG 0.066 . PCHAS_0725000 286 NIMNLEK|TE 0.057 . PCHAS_0725000 294 EITTLEK|EI 0.055 . PCHAS_0725000 300 KEIQENK|NI 0.055 . PCHAS_0725000 310 FSSILDK|GI 0.107 . PCHAS_0725000 320 PICEQGK|VG 0.059 . PCHAS_0725000 343 QVLLSIK|GI 0.064 . PCHAS_0725000 348 IKGISLK|YI 0.070 . PCHAS_0725000 362 FLSSLDR|NN 0.092 . PCHAS_0725000 365 SLDRNNK|TH 0.121 . PCHAS_0725000 376 LFLQYSK|LC 0.053 . PCHAS_0725000 388 YQEDYIK|NK 0.060 . PCHAS_0725000 390 EDYIKNK|KK 0.066 . PCHAS_0725000 391 DYIKNKK|KY 0.095 . PCHAS_0725000 392 YIKNKKK|YV 0.208 . PCHAS_0725000 395 NKKKYVK|QF 0.070 . PCHAS_0725000 398 KYVKQFK|QE 0.068 . PCHAS_0725000 404 KQECQNK|NI 0.068 . PCHAS_0725000 407 CQNKNIK|IN 0.068 . PCHAS_0725000 428 IDPSMFR|NC 0.066 . PCHAS_0725000 433 FRNCVNR|KG 0.091 . PCHAS_0725000 434 RNCVNRK|GN 0.090 . PCHAS_0725000 464 LIDNENK|IF 0.056 . PCHAS_0725000 468 ENKIFDR|LS 0.077 . PCHAS_0725000 482 IITETNK|RK 0.060 . PCHAS_0725000 483 ITETNKR|KH 0.178 . PCHAS_0725000 484 TETNKRK|HG 0.091 . PCHAS_0725000 493 EIDNTEK|NS 0.061 . PCHAS_0725000 511 TISNIDK|SI 0.124 . PCHAS_0725000 532 QSEIGNK|SV 0.113 . PCHAS_0725000 554 IDSSVLK|EL 0.090 . PCHAS_0725000 559 LKELETK|QN 0.069 . PCHAS_0725000 565 KQNEPDK|TT 0.079 . PCHAS_0725000 573 TGSENIK|IS 0.057 . PCHAS_0725000 581 SLMDCLK|NY 0.060 . PCHAS_0725000 585 CLKNYIK|KD 0.055 . PCHAS_0725000 586 LKNYIKK|DN 0.129 . PCHAS_0725000 599 YSEIENK|KV 0.092 . PCHAS_0725000 600 SEIENKK|VH 0.085 . PCHAS_0725000 605 KKVHAQK|DM 0.072 . PCHAS_0725000 608 HAQKDMK|FK 0.066 . PCHAS_0725000 610 QKDMKFK|SF 0.111 . PCHAS_0725000 621 YLFIHLK|RF 0.069 . PCHAS_0725000 622 LFIHLKR|FY 0.252 . PCHAS_0725000 632 DENWCAK|KI 0.068 . PCHAS_0725000 633 ENWCAKK|IN 0.122 . PCHAS_0725000 643 PIEAHDK|ID 0.058 . PCHAS_0725000 650 IDLEFMR|AE 0.083 . PCHAS_0725000 653 EFMRAEK|NA 0.111 . PCHAS_0725000 679 DQNILEK|YK 0.071 . PCHAS_0725000 681 NILEKYK|DV 0.091 . PCHAS_0725000 696 LGFEQDK|II 0.067 . PCHAS_0725000 702 KIIESIK|KV 0.071 . PCHAS_0725000 703 IIESIKK|VK 0.084 . PCHAS_0725000 705 ESIKKVK|IK 0.066 . PCHAS_0725000 707 IKKVKIK|NV 0.105 . PCHAS_0725000 732 TTQSSNK|NT 0.078 . PCHAS_0725000 751 ISMGISK|EV 0.067 . PCHAS_0725000 762 ASLLINK|ND 0.052 . PCHAS_0725000 767 NKNDLQK|SI 0.108 . PCHAS_0725000 783 DILTENK|CN 0.056 . PCHAS_0725000 792 AIINSNK|CD 0.064 . PCHAS_0725000 823 HYICYIK|DN 0.068 . PCHAS_0725000 827 YIKDNSK|WY 0.055 . PCHAS_0725000 835 YVFNDNK|VG 0.052 . PCHAS_0725000 845 CNENLGK|DT 0.067 . PCHAS_0725000 854 AYIHLYK|RI 0.065 . PCHAS_0725000 855 YIHLYKR|I- 0.168 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0725000 ATGGCTGATATTAAAAACATCATATCTCTAATTTCTAGTACTATAAAAGAACCAACCAAA GAAGATGTAATTTATTTAGGAGAATGTAGTATAACCGGCCATAAGGACATATTTGAAGAC GGGATTTTCATCGATTTGATATCCTTCGAAAGTTTTAGTTTAAAAAATTTGAAAGTGAAT TGTGCTCGGACAAATAACTCAGCGACAGTAGATGAACATAGATTTTATTTAAATATAAGA AAGAAAAAGAAAGTGCTAGAAAATGTTGAAGAAAAGGAAATAAAAAACTTAAACATTAAT GCAGAAGGTGGATTTATTGATAATAAAGTTTATGAATACGAATATGATTATTTTGTTTAT GATATAAAAACAGGTATATATATAAAGCTAAGTGAATTAGATCAAACTGTAATAAATATA TGTAATAATATAATAAACCATAAAAATGAAATTAAAAAAGATAATATAAATAAATGGGTT AATGAAATAAAAGAAAGTAAATATTCAAAAGATTTAATACAATTACCTAATATAAAAATA AAAAATGAAAATATTGAATGTGCAGTATGTAAATCAAAAAAAAATTTATGGTTAAATTTA TCTGATGGATATATTGGTTGTGGTAGAAAGATTTATAACTATGGAGGTGGATGTTTAAAC AATGAAGAAGGTGCTGCTTTAAAACATTTTTATGAAACAGGAAAAAAATATCCTTTAGTT GTTAAAATAGGAACTATAACCAAAGACGGAAATGCTGATGTTTTCTCATATGCTGATGAT GAAAATGATAGTGTAATAGATCCATATATTGCTACTCATTTGAATAATCTAGGTATAAAT ATAATGAATTTAGAAAAAACTGAAATTACTACATTAGAAAAAGAAATACAAGAAAATAAA AATATTAATTTCTCATCAATATTGGATAAAGGAATAGAACCTATTTGTGAACAAGGAAAA GTCGGATTGATAAATTTAGGCAATACATGTTATATGAATTGTGCACTACAAGTTTTGTTA TCCATAAAAGGTATAAGTTTAAAATATATAAATAATCTAGATAATTTTTTATCAAGCTTA GATAGAAATAATAAAACACATGATGATCTATTCTTACAATATTCTAAACTTTGTTATATG GCTTATCAAGAAGATTACATTAAAAACAAAAAAAAATATGTTAAACAATTTAAACAAGAA TGTCAAAATAAAAATATTAAAATTAATTATGATAGTGATGTTGATGAAGAAAATTCTGTT AGTATTGATCCAAGTATGTTTAGAAACTGTGTTAACAGAAAGGGAAACAACCCTTTTTGT AATAATAGCCAACAAGATATATATGAATATCTATCTTACATAATAAATGAATTGATAGAT AATGAAAATAAAATATTCGATAGATTATCAAACTGTACCACAAACATAATTACAGAAACA AATAAAAGAAAACATGGAGAAATCGATAATACTGAAAAAAATTCAAACCCTTATTTTCCT TTTGATGCAGACACTATTTCAAATATAGATAAGTCTATTTTTAATTATTTCACTTTTGAA ATCGAACAAACAATACAAAGTGAAATCGGAAATAAAAGTGTGAGCTCTTTTCAAAATATC ATATTGTCTTTAGATATACCAATCGATAGTTCAGTGTTAAAAGAATTGGAAACAAAACAA AATGAACCTGATAAAACTACAGGGTCAGAAAATATTAAAATTTCTTTAATGGATTGCTTA AAAAATTATATAAAAAAAGATAACATAAATGATTATTATTCAGAAATAGAGAATAAAAAA GTACATGCACAAAAAGATATGAAATTTAAATCTTTCCCACCATATCTTTTTATTCATCTT AAACGATTTTATGCTGATGAAAATTGGTGTGCTAAAAAAATTAACATACCTATTGAAGCG CATGATAAAATAGATTTAGAATTTATGAGAGCTGAGAAAAATGCAAATGAGGATACAAAT ACAAATACTAATAACACATGTAACAATGAAAACAGTGACCAAAATATTCTTGAAAAGTAT AAAGATGTTGTTGATTCTTTATTAGATTTAGGATTTGAACAAGATAAAATAATTGAATCA ATTAAAAAAGTAAAAATAAAAAATGTAAATAATTGTATATCTTATATATATGGTGAAGAT TCCGTCGAATTAGATACTACACAATCAAGTAATAAAAATACTGAAATTAATCAAAATAAT TTAGATTCTATTATTTCGATGGGAATAAGTAAAGAAGTAGCTATGGCTTCTCTTTTAATA AATAAAAATGACCTCCAAAAATCAATTGATTATATTTTTTCAAATATGGATATCCTCACA GAGAATAAATGCAATGCGATTATAAACAGCAACAAATGTGATGATGGTTTAGCAAACTAC GAATTGGTAGCATCAATTGTACACATAGGAAATAATGCAAATTCAGGTCACTACATATGC TATATCAAGGATAATTCAAAGTGGTACGTATTTAATGATAATAAGGTCGGCTTGTGCAAT GAAAATTTGGGAAAGGATACAGCCTACATTCATTTATACAAAAGAATATAA
  • Download Fasta

  • Fasta :-

    MADIKNIISLISSTIKEPTKEDVIYLGECSITGHKDIFEDGIFIDLISFESFSLKNLKVN CARTNNSATVDEHRFYLNIRKKKKVLENVEEKEIKNLNINAEGGFIDNKVYEYEYDYFVY DIKTGIYIKLSELDQTVINICNNIINHKNEIKKDNINKWVNEIKESKYSKDLIQLPNIKI KNENIECAVCKSKKNLWLNLSDGYIGCGRKIYNYGGGCLNNEEGAALKHFYETGKKYPLV VKIGTITKDGNADVFSYADDENDSVIDPYIATHLNNLGINIMNLEKTEITTLEKEIQENK NINFSSILDKGIEPICEQGKVGLINLGNTCYMNCALQVLLSIKGISLKYINNLDNFLSSL DRNNKTHDDLFLQYSKLCYMAYQEDYIKNKKKYVKQFKQECQNKNIKINYDSDVDEENSV SIDPSMFRNCVNRKGNNPFCNNSQQDIYEYLSYIINELIDNENKIFDRLSNCTTNIITET NKRKHGEIDNTEKNSNPYFPFDADTISNIDKSIFNYFTFEIEQTIQSEIGNKSVSSFQNI ILSLDIPIDSSVLKELETKQNEPDKTTGSENIKISLMDCLKNYIKKDNINDYYSEIENKK VHAQKDMKFKSFPPYLFIHLKRFYADENWCAKKINIPIEAHDKIDLEFMRAEKNANEDTN TNTNNTCNNENSDQNILEKYKDVVDSLLDLGFEQDKIIESIKKVKIKNVNNCISYIYGED SVELDTTQSSNKNTEINQNNLDSIISMGISKEVAMASLLINKNDLQKSIDYIFSNMDILT ENKCNAIINSNKCDDGLANYELVASIVHIGNNANSGHYICYIKDNSKWYVFNDNKVGLCN ENLGKDTAYIHLYKRI

  • title: Active Site
  • coordinates: N325,C330,H817,D833
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_0725000594 SNDYYSEIEN0.995unspPCHAS_0725000594 SNDYYSEIEN0.995unspPCHAS_0725000594 SNDYYSEIEN0.995unspPCHAS_0725000730 STTQSSNKNT0.995unspPCHAS_0725000264 SDENDSVIDP0.996unspPCHAS_0725000412 SINYDSDVDE0.993unsp

PCHAS_072500      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India