PCHAS_0809200 | ATP-dependent protease ATPase subunit ClpY, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_0809200OTHER0.9975700.0000460.002384
No Results

  • Fasta :-

    >PCHAS_0809200 MKKLDAHKYIKLANFLNKKKQCAPFNFNYVKNKGQDKNIHNCQSSIKREALNSVEQNDNI STSSKFNEKLTTLNNATTTGCNNNNSFLSNQQKGRKHIFALSNKKYNKNDLVIKINYKTN EEMAKVHSIRSNKINNSNLEGTEFKLKKATMFMSPNAQGSSEISNHAPNNRSQRRDFEKY KSVQMNNSIDMVTNLDNTKKAQYCEYAASNNVSRNNSEEIPETERIINLTNREGNEIHCD EFENCAKVKITKENIININEIQEGKKKKYFGSEEGNNNEGEIGNDENKDNMKNEDNKNSM NNDESNKTNDKTTKKSNNKCLYPHEIVEYLNKYIIGQSEAKKVVANALRQRWRRTQLDED MKKDVIPKNILMIGPTGVGKTEIARRISMFIDAPFIKVEATKFTEVGFHGKDVDQIIKDL VEIAVKRQKNKMETEIKEQAEEAVNNIILYSLLGSGVKEEEKQIWKKYLKEGLLDDKIIN IDIPNYINNNNNMFTNDSVENAVKEALSNHQNIKSVKIIHQNMNKQNDKKTMTIKEAKQK LLQIEIDSSINQDAILKTAISSVEEEGIVFIDEIDKICSKSSSSYNGPDASAEGVQRDLL PLIEGCVINTKYGNINTNYILFIASGAFQRVKPNDMLNELQGRLPVHVNLSSLSIKDFIE ILTKTHNNLLKQNIALLKTEGIDLQFTDDAIESIANAAHDMNTYIENIGVRRLHTIIEKI MEEINYDVHKNANKTIVIDKEVVKKSLEGFIKQFDLKKYII
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0809200.fa Sequence name : PCHAS_0809200 Sequence length : 761 VALUES OF COMPUTED PARAMETERS Coef20 : 3.534 CoefTot : -2.502 ChDiff : 8 ZoneTo : 35 KR : 9 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.629 1.041 -0.100 0.462 MesoH : -0.875 0.219 -0.413 0.178 MuHd_075 : 25.258 16.057 8.762 5.777 MuHd_095 : 22.460 17.082 7.991 5.120 MuHd_100 : 19.512 19.750 7.460 4.958 MuHd_105 : 28.010 22.547 10.303 6.845 Hmax_075 : -2.567 4.667 -2.905 2.660 Hmax_095 : -2.100 3.600 -3.549 2.740 Hmax_100 : 3.500 8.000 -1.140 3.260 Hmax_105 : 3.400 9.500 0.364 3.070 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.6869 0.3131 DFMC : 0.7191 0.2809
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 761 PCHAS_0809200 MKKLDAHKYIKLANFLNKKKQCAPFNFNYVKNKGQDKNIHNCQSSIKREALNSVEQNDNISTSSKFNEKLTTLNNATTTG 80 CNNNNSFLSNQQKGRKHIFALSNKKYNKNDLVIKINYKTNEEMAKVHSIRSNKINNSNLEGTEFKLKKATMFMSPNAQGS 160 SEISNHAPNNRSQRRDFEKYKSVQMNNSIDMVTNLDNTKKAQYCEYAASNNVSRNNSEEIPETERIINLTNREGNEIHCD 240 EFENCAKVKITKENIININEIQEGKKKKYFGSEEGNNNEGEIGNDENKDNMKNEDNKNSMNNDESNKTNDKTTKKSNNKC 320 LYPHEIVEYLNKYIIGQSEAKKVVANALRQRWRRTQLDEDMKKDVIPKNILMIGPTGVGKTEIARRISMFIDAPFIKVEA 400 TKFTEVGFHGKDVDQIIKDLVEIAVKRQKNKMETEIKEQAEEAVNNIILYSLLGSGVKEEEKQIWKKYLKEGLLDDKIIN 480 IDIPNYINNNNNMFTNDSVENAVKEALSNHQNIKSVKIIHQNMNKQNDKKTMTIKEAKQKLLQIEIDSSINQDAILKTAI 560 SSVEEEGIVFIDEIDKICSKSSSSYNGPDASAEGVQRDLLPLIEGCVINTKYGNINTNYILFIASGAFQRVKPNDMLNEL 640 QGRLPVHVNLSSLSIKDFIEILTKTHNNLLKQNIALLKTEGIDLQFTDDAIESIANAAHDMNTYIENIGVRRLHTIIEKI 720 MEEINYDVHKNANKTIVIDKEVVKKSLEGFIKQFDLKKYII 800 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ......................................... 800 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0809200 2 -----MK|KL 0.071 . PCHAS_0809200 3 ----MKK|LD 0.083 . PCHAS_0809200 8 KKLDAHK|YI 0.063 . PCHAS_0809200 11 DAHKYIK|LA 0.062 . PCHAS_0809200 18 LANFLNK|KK 0.072 . PCHAS_0809200 19 ANFLNKK|KQ 0.078 . PCHAS_0809200 20 NFLNKKK|QC 0.084 . PCHAS_0809200 31 FNFNYVK|NK 0.071 . PCHAS_0809200 33 FNYVKNK|GQ 0.091 . PCHAS_0809200 37 KNKGQDK|NI 0.075 . PCHAS_0809200 47 NCQSSIK|RE 0.054 . PCHAS_0809200 48 CQSSIKR|EA 0.224 . PCHAS_0809200 65 NISTSSK|FN 0.083 . PCHAS_0809200 69 SSKFNEK|LT 0.062 . PCHAS_0809200 93 FLSNQQK|GR 0.079 . PCHAS_0809200 95 SNQQKGR|KH 0.110 . PCHAS_0809200 96 NQQKGRK|HI 0.090 . PCHAS_0809200 104 IFALSNK|KY 0.060 . PCHAS_0809200 105 FALSNKK|YN 0.079 . PCHAS_0809200 108 SNKKYNK|ND 0.062 . PCHAS_0809200 114 KNDLVIK|IN 0.062 . PCHAS_0809200 118 VIKINYK|TN 0.061 . PCHAS_0809200 125 TNEEMAK|VH 0.064 . PCHAS_0809200 130 AKVHSIR|SN 0.149 . PCHAS_0809200 133 HSIRSNK|IN 0.142 . PCHAS_0809200 145 LEGTEFK|LK 0.067 . PCHAS_0809200 147 GTEFKLK|KA 0.062 . PCHAS_0809200 148 TEFKLKK|AT 0.115 . PCHAS_0809200 171 NHAPNNR|SQ 0.112 . PCHAS_0809200 174 PNNRSQR|RD 0.320 . PCHAS_0809200 175 NNRSQRR|DF 0.305 . PCHAS_0809200 179 QRRDFEK|YK 0.102 . PCHAS_0809200 181 RDFEKYK|SV 0.109 . PCHAS_0809200 199 TNLDNTK|KA 0.067 . PCHAS_0809200 200 NLDNTKK|AQ 0.092 . PCHAS_0809200 214 ASNNVSR|NN 0.135 . PCHAS_0809200 225 EIPETER|II 0.067 . PCHAS_0809200 232 IINLTNR|EG 0.092 . PCHAS_0809200 247 EFENCAK|VK 0.064 . PCHAS_0809200 249 ENCAKVK|IT 0.074 . PCHAS_0809200 252 AKVKITK|EN 0.066 . PCHAS_0809200 265 NEIQEGK|KK 0.057 . PCHAS_0809200 266 EIQEGKK|KK 0.078 . PCHAS_0809200 267 IQEGKKK|KY 0.124 . PCHAS_0809200 268 QEGKKKK|YF 0.236 . PCHAS_0809200 288 IGNDENK|DN 0.086 . PCHAS_0809200 292 ENKDNMK|NE 0.064 . PCHAS_0809200 297 MKNEDNK|NS 0.066 . PCHAS_0809200 307 NNDESNK|TN 0.061 . PCHAS_0809200 311 SNKTNDK|TT 0.061 . PCHAS_0809200 314 TNDKTTK|KS 0.064 . PCHAS_0809200 315 NDKTTKK|SN 0.144 . PCHAS_0809200 319 TKKSNNK|CL 0.073 . PCHAS_0809200 332 IVEYLNK|YI 0.066 . PCHAS_0809200 341 IGQSEAK|KV 0.075 . PCHAS_0809200 342 GQSEAKK|VV 0.180 . PCHAS_0809200 349 VVANALR|QR 0.069 . PCHAS_0809200 351 ANALRQR|WR 0.102 . PCHAS_0809200 353 ALRQRWR|RT 0.104 . PCHAS_0809200 354 LRQRWRR|TQ 0.469 . PCHAS_0809200 362 QLDEDMK|KD 0.053 . PCHAS_0809200 363 LDEDMKK|DV 0.166 . PCHAS_0809200 368 KKDVIPK|NI 0.074 . PCHAS_0809200 380 GPTGVGK|TE 0.062 . PCHAS_0809200 385 GKTEIAR|RI 0.095 . PCHAS_0809200 386 KTEIARR|IS 0.132 . PCHAS_0809200 397 IDAPFIK|VE 0.063 . PCHAS_0809200 402 IKVEATK|FT 0.103 . PCHAS_0809200 411 EVGFHGK|DV 0.148 . PCHAS_0809200 418 DVDQIIK|DL 0.057 . PCHAS_0809200 426 LVEIAVK|RQ 0.057 . PCHAS_0809200 427 VEIAVKR|QK 0.206 . PCHAS_0809200 429 IAVKRQK|NK 0.061 . PCHAS_0809200 431 VKRQKNK|ME 0.079 . PCHAS_0809200 437 KMETEIK|EQ 0.056 . PCHAS_0809200 458 LLGSGVK|EE 0.059 . PCHAS_0809200 462 GVKEEEK|QI 0.064 . PCHAS_0809200 466 EEKQIWK|KY 0.056 . PCHAS_0809200 467 EKQIWKK|YL 0.148 . PCHAS_0809200 470 IWKKYLK|EG 0.052 . PCHAS_0809200 477 EGLLDDK|II 0.060 . PCHAS_0809200 504 SVENAVK|EA 0.059 . PCHAS_0809200 514 SNHQNIK|SV 0.150 . PCHAS_0809200 517 QNIKSVK|II 0.083 . PCHAS_0809200 525 IHQNMNK|QN 0.077 . PCHAS_0809200 529 MNKQNDK|KT 0.070 . PCHAS_0809200 530 NKQNDKK|TM 0.110 . PCHAS_0809200 535 KKTMTIK|EA 0.084 . PCHAS_0809200 538 MTIKEAK|QK 0.062 . PCHAS_0809200 540 IKEAKQK|LL 0.077 . PCHAS_0809200 557 NQDAILK|TA 0.060 . PCHAS_0809200 576 FIDEIDK|IC 0.057 . PCHAS_0809200 580 IDKICSK|SS 0.071 . PCHAS_0809200 597 SAEGVQR|DL 0.110 . PCHAS_0809200 611 GCVINTK|YG 0.062 . PCHAS_0809200 630 ASGAFQR|VK 0.073 . PCHAS_0809200 632 GAFQRVK|PN 0.064 . PCHAS_0809200 643 LNELQGR|LP 0.076 . PCHAS_0809200 656 LSSLSIK|DF 0.107 . PCHAS_0809200 664 FIEILTK|TH 0.057 . PCHAS_0809200 671 THNNLLK|QN 0.090 . PCHAS_0809200 678 QNIALLK|TE 0.064 . PCHAS_0809200 711 IENIGVR|RL 0.095 . PCHAS_0809200 712 ENIGVRR|LH 0.135 . PCHAS_0809200 719 LHTIIEK|IM 0.061 . PCHAS_0809200 730 INYDVHK|NA 0.079 . PCHAS_0809200 734 VHKNANK|TI 0.058 . PCHAS_0809200 740 KTIVIDK|EV 0.069 . PCHAS_0809200 744 IDKEVVK|KS 0.060 . PCHAS_0809200 745 DKEVVKK|SL 0.228 . PCHAS_0809200 752 SLEGFIK|QF 0.066 . PCHAS_0809200 757 IKQFDLK|KY 0.067 . PCHAS_0809200 758 KQFDLKK|YI 0.112 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0809200 ATGAAAAAGCTTGATGCTCACAAATATATTAAGCTAGCTAATTTTTTAAATAAAAAAAAA CAATGTGCCCCCTTTAATTTTAACTATGTGAAAAATAAAGGACAAGATAAAAATATTCAT AATTGTCAAAGCTCAATCAAAAGAGAGGCACTAAATAGTGTAGAACAAAATGATAATATA AGTACTAGTAGCAAATTTAATGAAAAATTAACAACGCTTAACAATGCCACTACAACGGGA TGTAATAATAATAATTCTTTCCTTTCAAATCAACAAAAAGGAAGAAAGCATATTTTTGCA TTGTCAAACAAAAAATACAACAAGAATGATTTGGTGATAAAAATAAATTATAAAACTAAT GAAGAGATGGCAAAGGTGCATTCAATACGATCTAACAAAATAAATAATTCTAATTTAGAA GGAACTGAATTTAAATTGAAAAAGGCTACTATGTTTATGAGTCCCAATGCTCAAGGTAGT TCAGAAATTTCCAATCATGCACCAAACAATCGATCACAAAGACGTGATTTCGAAAAATAC AAGTCAGTGCAGATGAATAATAGCATTGACATGGTCACCAATTTAGATAATACAAAAAAG GCACAATATTGTGAATATGCTGCAAGCAATAATGTAAGCAGAAACAATTCAGAAGAAATT CCTGAAACGGAAAGAATAATAAATTTAACAAACAGAGAAGGGAACGAAATACATTGTGAC GAATTTGAAAACTGCGCTAAAGTTAAAATTACAAAAGAAAATATTATAAATATAAATGAA ATACAAGAGGGGAAAAAAAAAAAATATTTTGGGTCTGAAGAAGGAAATAACAATGAAGGT GAAATAGGAAATGATGAAAATAAAGATAATATGAAAAATGAAGATAATAAAAATAGTATG AACAATGATGAAAGTAATAAAACAAATGATAAGACAACAAAAAAAAGTAACAATAAATGT TTATATCCACATGAAATTGTAGAATATTTAAATAAATATATAATAGGTCAATCAGAAGCA AAAAAAGTTGTAGCAAATGCATTAAGACAAAGATGGAGAAGAACACAACTTGATGAAGAT ATGAAAAAAGATGTAATTCCAAAAAATATATTAATGATTGGACCAACAGGTGTAGGTAAA ACTGAAATAGCTAGACGTATATCTATGTTTATAGATGCACCATTTATTAAAGTAGAAGCA ACAAAATTTACAGAAGTTGGATTTCATGGAAAAGATGTAGATCAAATTATTAAAGATTTA GTTGAAATTGCCGTCAAAAGACAAAAAAATAAAATGGAAACAGAAATAAAAGAACAAGCA GAAGAAGCTGTTAATAATATTATATTATATTCCCTTTTAGGTAGTGGTGTAAAAGAGGAA GAAAAACAAATATGGAAAAAATATTTGAAGGAAGGATTATTAGATGATAAAATTATTAAT ATCGATATACCAAATTATATAAATAATAATAATAATATGTTTACTAATGATTCAGTTGAA AATGCTGTAAAAGAAGCATTAAGTAATCATCAAAATATTAAAAGTGTAAAAATAATACAT CAAAATATGAACAAACAAAATGATAAAAAAACAATGACAATTAAAGAAGCAAAACAAAAA TTATTACAAATAGAAATTGATTCATCTATTAATCAAGATGCAATTCTTAAAACAGCTATA AGTTCAGTTGAAGAAGAAGGAATAGTATTTATTGATGAAATTGATAAGATATGTTCTAAG TCTTCGTCATCTTATAATGGTCCAGATGCAAGTGCGGAAGGAGTTCAACGAGATTTATTA CCATTGATTGAAGGATGTGTTATAAATACAAAATATGGAAACATAAATACAAATTATATT TTATTTATTGCATCGGGAGCTTTCCAAAGAGTCAAACCAAATGATATGCTAAATGAATTA CAAGGAAGATTACCTGTACATGTAAATTTATCAAGCTTGTCTATAAAAGATTTTATTGAA ATATTAACGAAAACCCATAATAATTTATTAAAACAAAATATCGCTTTACTAAAAACGGAA GGTATTGATCTTCAATTTACAGATGACGCAATTGAATCTATTGCAAACGCTGCACATGAT ATGAATACCTACATCGAAAATATTGGTGTTCGTCGATTGCATACAATTATTGAAAAAATT ATGGAAGAAATTAATTATGACGTCCATAAAAATGCTAACAAGACAATAGTCATTGATAAA GAGGTTGTTAAGAAATCTCTCGAAGGATTTATCAAGCAGTTTGACTTGAAGAAGTACATC ATTTAG
  • Download Fasta

  • Fasta :-

    MKKLDAHKYIKLANFLNKKKQCAPFNFNYVKNKGQDKNIHNCQSSIKREALNSVEQNDNI STSSKFNEKLTTLNNATTTGCNNNNSFLSNQQKGRKHIFALSNKKYNKNDLVIKINYKTN EEMAKVHSIRSNKINNSNLEGTEFKLKKATMFMSPNAQGSSEISNHAPNNRSQRRDFEKY KSVQMNNSIDMVTNLDNTKKAQYCEYAASNNVSRNNSEEIPETERIINLTNREGNEIHCD EFENCAKVKITKENIININEIQEGKKKKYFGSEEGNNNEGEIGNDENKDNMKNEDNKNSM NNDESNKTNDKTTKKSNNKCLYPHEIVEYLNKYIIGQSEAKKVVANALRQRWRRTQLDED MKKDVIPKNILMIGPTGVGKTEIARRISMFIDAPFIKVEATKFTEVGFHGKDVDQIIKDL VEIAVKRQKNKMETEIKEQAEEAVNNIILYSLLGSGVKEEEKQIWKKYLKEGLLDDKIIN IDIPNYINNNNNMFTNDSVENAVKEALSNHQNIKSVKIIHQNMNKQNDKKTMTIKEAKQK LLQIEIDSSINQDAILKTAISSVEEEGIVFIDEIDKICSKSSSSYNGPDASAEGVQRDLL PLIEGCVINTKYGNINTNYILFIASGAFQRVKPNDMLNELQGRLPVHVNLSSLSIKDFIE ILTKTHNNLLKQNIALLKTEGIDLQFTDDAIESIANAAHDMNTYIENIGVRRLHTIIEKI MEEINYDVHKNANKTIVIDKEVVKKSLEGFIKQFDLKKYII

  • title: ATP binding site
  • coordinates: P375,T376,G377,V378,G379,K380,T381,E382
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_0809200562 STAISSVEEE0.993unspPCHAS_0809200562 STAISSVEEE0.993unspPCHAS_0809200562 STAISSVEEE0.993unspPCHAS_0809200584 SKSSSSYNGP0.99unspPCHAS_0809200654 SLSSLSIKDF0.995unspPCHAS_080920063 SNISTSSKFN0.992unspPCHAS_0809200217 SSRNNSEEIP0.991unsp

PCHAS_080920      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India