PCHAS_0819600 | eukaryotic translation initiation factor 3 subunit F, putative

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  • Fasta :-

    >PCHAS_0819600 MSMNRYNFKTMSSLLKNKTPQHFDIQPHTNIKCIVHPSVIFTILDSYLRRDEDQTHVIGT LMGSIIDTNLVEISDCFVDKHSLNEGGFLQIIKDHHETMYELKQKIRPRDQVVGWFCSGS ELSELSCAVHGWFKEHNSISKFYPHSPLNEPIHLLVDASLESGFLNIKAYVQLPINLVKE YFVHFHEIQIELLPCNVERADVAKITDKGTKGGDNNSKDKLLNHEIDENSLKKLLIMLKN CKSYVQDIVDKKRKGNVAIGRYLHKVFSNDPFVSIEKFDSINESILQDNLMISYLSNLAH LQFLIAEKLNASSMQ
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0819600.fa Sequence name : PCHAS_0819600 Sequence length : 315 VALUES OF COMPUTED PARAMETERS Coef20 : 4.192 CoefTot : -2.220 ChDiff : -4 ZoneTo : 44 KR : 5 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.124 1.365 0.063 0.544 MesoH : -0.491 0.207 -0.446 0.244 MuHd_075 : 17.642 21.824 7.896 5.336 MuHd_095 : 28.996 17.654 7.013 6.118 MuHd_100 : 24.593 17.419 8.058 5.214 MuHd_105 : 19.367 12.948 6.988 3.762 Hmax_075 : 1.200 20.650 0.828 4.865 Hmax_095 : 12.400 6.600 -0.778 1.566 Hmax_100 : 5.900 9.700 -0.604 3.540 Hmax_105 : 1.167 9.400 -1.500 1.418 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7725 0.2275 DFMC : 0.6780 0.3220
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 315 PCHAS_0819600 MSMNRYNFKTMSSLLKNKTPQHFDIQPHTNIKCIVHPSVIFTILDSYLRRDEDQTHVIGTLMGSIIDTNLVEISDCFVDK 80 HSLNEGGFLQIIKDHHETMYELKQKIRPRDQVVGWFCSGSELSELSCAVHGWFKEHNSISKFYPHSPLNEPIHLLVDASL 160 ESGFLNIKAYVQLPINLVKEYFVHFHEIQIELLPCNVERADVAKITDKGTKGGDNNSKDKLLNHEIDENSLKKLLIMLKN 240 CKSYVQDIVDKKRKGNVAIGRYLHKVFSNDPFVSIEKFDSINESILQDNLMISYLSNLAHLQFLIAEKLNASSMQ 320 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ........................................................................... 320 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0819600 5 --MSMNR|YN 0.096 . PCHAS_0819600 9 MNRYNFK|TM 0.073 . PCHAS_0819600 16 TMSSLLK|NK 0.073 . PCHAS_0819600 18 SSLLKNK|TP 0.059 . PCHAS_0819600 32 QPHTNIK|CI 0.062 . PCHAS_0819600 49 ILDSYLR|RD 0.078 . PCHAS_0819600 50 LDSYLRR|DE 0.236 . PCHAS_0819600 80 SDCFVDK|HS 0.072 . PCHAS_0819600 93 GFLQIIK|DH 0.063 . PCHAS_0819600 103 ETMYELK|QK 0.065 . PCHAS_0819600 105 MYELKQK|IR 0.060 . PCHAS_0819600 107 ELKQKIR|PR 0.119 . PCHAS_0819600 109 KQKIRPR|DQ 0.125 . PCHAS_0819600 134 AVHGWFK|EH 0.057 . PCHAS_0819600 141 EHNSISK|FY 0.068 . PCHAS_0819600 168 SGFLNIK|AY 0.058 . PCHAS_0819600 179 LPINLVK|EY 0.072 . PCHAS_0819600 199 LPCNVER|AD 0.115 . PCHAS_0819600 204 ERADVAK|IT 0.126 . PCHAS_0819600 208 VAKITDK|GT 0.071 . PCHAS_0819600 211 ITDKGTK|GG 0.060 . PCHAS_0819600 218 GGDNNSK|DK 0.060 . PCHAS_0819600 220 DNNSKDK|LL 0.074 . PCHAS_0819600 232 IDENSLK|KL 0.064 . PCHAS_0819600 233 DENSLKK|LL 0.087 . PCHAS_0819600 239 KLLIMLK|NC 0.056 . PCHAS_0819600 242 IMLKNCK|SY 0.072 . PCHAS_0819600 251 VQDIVDK|KR 0.055 . PCHAS_0819600 252 QDIVDKK|RK 0.094 . PCHAS_0819600 253 DIVDKKR|KG 0.145 . PCHAS_0819600 254 IVDKKRK|GN 0.103 . PCHAS_0819600 261 GNVAIGR|YL 0.146 . PCHAS_0819600 265 IGRYLHK|VF 0.065 . PCHAS_0819600 277 PFVSIEK|FD 0.064 . PCHAS_0819600 308 QFLIAEK|LN 0.057 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0819600 ATGAGTATGAACAGATATAATTTTAAAACAATGAGTAGCTTGCTGAAAAATAAAACACCT CAGCATTTTGATATACAACCACATACAAATATAAAATGTATTGTACATCCTTCTGTAATA TTTACAATATTAGATTCATACTTAAGAAGAGATGAAGATCAGACTCATGTGATTGGAACT TTGATGGGCTCCATCATTGACACTAATTTGGTTGAAATATCGGACTGCTTTGTCGACAAG CATTCCCTAAATGAAGGGGGCTTTTTGCAAATCATAAAGGACCACCACGAGACGATGTAT GAGCTTAAGCAAAAAATACGTCCAAGGGATCAAGTCGTCGGATGGTTTTGTTCGGGATCT GAATTATCGGAATTGTCATGTGCTGTTCATGGATGGTTTAAAGAACATAATTCGATTTCA AAATTTTATCCACATTCTCCATTGAATGAACCCATACATTTATTAGTTGATGCATCATTA GAAAGTGGATTCCTAAATATAAAAGCATATGTACAACTACCTATTAATTTAGTTAAAGAA TATTTTGTTCATTTTCATGAGATTCAAATTGAATTATTACCATGTAATGTTGAAAGAGCT GATGTTGCCAAAATAACTGACAAAGGAACAAAAGGTGGAGATAATAATAGTAAAGATAAA TTATTAAATCATGAAATTGATGAAAATTCATTAAAAAAATTATTAATTATGTTAAAAAAT TGTAAATCATATGTACAAGATATTGTTGATAAAAAAAGAAAAGGAAATGTAGCCATAGGA AGATATTTACATAAAGTTTTTTCAAATGATCCTTTTGTATCGATTGAAAAATTTGATTCT ATTAATGAAAGTATTTTACAAGATAATTTAATGATTTCTTATTTATCAAATCTAGCACAT TTACAATTTTTAATAGCAGAAAAATTAAATGCCTCTTCTATGCAATAA
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PCHAS_081960      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India