PCHAS_0834700 | mitochondrial-processing peptidase subunit beta, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_0834700mTP0.1410480.0000110.858940CS pos: 24-25. RKY-ST. Pr: 0.8797
No Results

  • Fasta :-

    >PCHAS_0834700 MLGKKIRNTLGNQLKGCMAYSRKYSTSNLMEEIKNQPLSKITELPNKMKVATIKNNCEVP TIGLWISSGSKYENKANNGVAHFLEHMIFKGTNKRNRVQLEKEIENMGAHLNAYTAREQT GYYFKCFKDDVKWCIELLSDILTNSVFDEKLIEMEKHVILREMEEVEKSADEVIFDKLHM TAFRDHPLGYTILGPVENIKNMKKNDILNYIQKNYTSDRMVLCAVGDVEHDNIVKLVEQN FSNIKPQDEKGLILKQEFDKIKPFFCGSEIIIRDDDSGPNAHVAVAFEGVPWTSSDSITF MLMQCIIGTYKKNEEGIVPGKLSANRTINNISNKMTIGCADYFTSFNTCYNNTGLFGFYV QCDELAVEHAVGELMFGITSLSYSITDEEVELAKIHLKTQLISMFESSSTLAEEISRQIL VYGRPITLAEFITRLNEIDAEEVKRVAWKYLHDRDIAVAAMGALHGMPQYFDLRQKTYWL RY
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0834700.fa Sequence name : PCHAS_0834700 Sequence length : 482 VALUES OF COMPUTED PARAMETERS Coef20 : 3.674 CoefTot : -0.838 ChDiff : -8 ZoneTo : 30 KR : 6 DE : 0 CleavSite : 25 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.200 1.182 0.100 0.519 MesoH : -0.290 0.371 -0.304 0.252 MuHd_075 : 29.103 18.152 7.102 7.733 MuHd_095 : 36.321 28.787 12.167 8.040 MuHd_100 : 32.158 23.267 12.038 6.753 MuHd_105 : 30.113 19.535 11.284 6.496 Hmax_075 : 3.500 10.150 -1.048 3.477 Hmax_095 : 10.325 14.350 2.737 4.603 Hmax_100 : 6.500 14.500 2.992 4.620 Hmax_105 : 5.300 6.533 1.587 3.127 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0672 0.9328 DFMC : 0.1220 0.8780 This protein is probably imported in mitochondria. f(Ser) = 0.1000 f(Arg) = 0.0667 CMi = 0.61224 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 482 PCHAS_0834700 MLGKKIRNTLGNQLKGCMAYSRKYSTSNLMEEIKNQPLSKITELPNKMKVATIKNNCEVPTIGLWISSGSKYENKANNGV 80 AHFLEHMIFKGTNKRNRVQLEKEIENMGAHLNAYTAREQTGYYFKCFKDDVKWCIELLSDILTNSVFDEKLIEMEKHVIL 160 REMEEVEKSADEVIFDKLHMTAFRDHPLGYTILGPVENIKNMKKNDILNYIQKNYTSDRMVLCAVGDVEHDNIVKLVEQN 240 FSNIKPQDEKGLILKQEFDKIKPFFCGSEIIIRDDDSGPNAHVAVAFEGVPWTSSDSITFMLMQCIIGTYKKNEEGIVPG 320 KLSANRTINNISNKMTIGCADYFTSFNTCYNNTGLFGFYVQCDELAVEHAVGELMFGITSLSYSITDEEVELAKIHLKTQ 400 LISMFESSSTLAEEISRQILVYGRPITLAEFITRLNEIDAEEVKRVAWKYLHDRDIAVAAMGALHGMPQYFDLRQKTYWL 480 RY 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .. 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0834700 4 ---MLGK|KI 0.065 . PCHAS_0834700 5 --MLGKK|IR 0.082 . PCHAS_0834700 7 MLGKKIR|NT 0.103 . PCHAS_0834700 15 TLGNQLK|GC 0.069 . PCHAS_0834700 22 GCMAYSR|KY 0.109 . PCHAS_0834700 23 CMAYSRK|YS 0.111 . PCHAS_0834700 34 NLMEEIK|NQ 0.057 . PCHAS_0834700 40 KNQPLSK|IT 0.071 . PCHAS_0834700 47 ITELPNK|MK 0.060 . PCHAS_0834700 49 ELPNKMK|VA 0.074 . PCHAS_0834700 54 MKVATIK|NN 0.075 . PCHAS_0834700 71 WISSGSK|YE 0.067 . PCHAS_0834700 75 GSKYENK|AN 0.073 . PCHAS_0834700 90 LEHMIFK|GT 0.076 . PCHAS_0834700 94 IFKGTNK|RN 0.062 . PCHAS_0834700 95 FKGTNKR|NR 0.144 . PCHAS_0834700 97 GTNKRNR|VQ 0.097 . PCHAS_0834700 102 NRVQLEK|EI 0.077 . PCHAS_0834700 117 LNAYTAR|EQ 0.112 . PCHAS_0834700 125 QTGYYFK|CF 0.065 . PCHAS_0834700 128 YYFKCFK|DD 0.059 . PCHAS_0834700 132 CFKDDVK|WC 0.061 . PCHAS_0834700 150 NSVFDEK|LI 0.067 . PCHAS_0834700 156 KLIEMEK|HV 0.070 . PCHAS_0834700 161 EKHVILR|EM 0.147 . PCHAS_0834700 168 EMEEVEK|SA 0.092 . PCHAS_0834700 177 DEVIFDK|LH 0.064 . PCHAS_0834700 184 LHMTAFR|DH 0.096 . PCHAS_0834700 200 GPVENIK|NM 0.058 . PCHAS_0834700 203 ENIKNMK|KN 0.065 . PCHAS_0834700 204 NIKNMKK|ND 0.077 . PCHAS_0834700 213 ILNYIQK|NY 0.066 . PCHAS_0834700 219 KNYTSDR|MV 0.145 . PCHAS_0834700 235 EHDNIVK|LV 0.074 . PCHAS_0834700 245 QNFSNIK|PQ 0.061 . PCHAS_0834700 250 IKPQDEK|GL 0.061 . PCHAS_0834700 255 EKGLILK|QE 0.064 . PCHAS_0834700 260 LKQEFDK|IK 0.059 . PCHAS_0834700 262 QEFDKIK|PF 0.068 . PCHAS_0834700 273 GSEIIIR|DD 0.117 . PCHAS_0834700 311 CIIGTYK|KN 0.064 . PCHAS_0834700 312 IIGTYKK|NE 0.112 . PCHAS_0834700 321 EGIVPGK|LS 0.055 . PCHAS_0834700 326 GKLSANR|TI 0.084 . PCHAS_0834700 334 INNISNK|MT 0.084 . PCHAS_0834700 394 EEVELAK|IH 0.056 . PCHAS_0834700 398 LAKIHLK|TQ 0.062 . PCHAS_0834700 417 LAEEISR|QI 0.081 . PCHAS_0834700 424 QILVYGR|PI 0.087 . PCHAS_0834700 434 LAEFITR|LN 0.082 . PCHAS_0834700 444 IDAEEVK|RV 0.067 . PCHAS_0834700 445 DAEEVKR|VA 0.249 . PCHAS_0834700 449 VKRVAWK|YL 0.083 . PCHAS_0834700 454 WKYLHDR|DI 0.140 . PCHAS_0834700 474 PQYFDLR|QK 0.077 . PCHAS_0834700 476 YFDLRQK|TY 0.054 . PCHAS_0834700 481 QKTYWLR|Y- 0.090 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0834700 ATGCTAGGAAAAAAAATTCGTAATACCTTGGGTAACCAACTCAAGGGATGCATGGCATAT TCTCGAAAGTATAGTACATCAAATTTGATGGAAGAAATAAAAAATCAGCCATTAAGTAAA ATTACAGAATTGCCAAATAAAATGAAAGTAGCAACCATAAAAAATAATTGTGAAGTTCCG ACTATCGGATTATGGATAAGTAGTGGAAGTAAATATGAAAATAAAGCAAATAATGGTGTA GCTCATTTTCTAGAGCATATGATTTTTAAAGGAACCAATAAAAGAAATAGAGTTCAATTA GAAAAAGAAATAGAAAATATGGGAGCACATTTAAATGCATATACAGCTAGAGAACAAACA GGATATTATTTTAAATGTTTTAAAGATGATGTAAAATGGTGTATTGAATTATTAAGTGAT ATATTAACAAATAGTGTATTTGATGAAAAACTAATAGAAATGGAAAAGCATGTTATTTTA AGAGAAATGGAAGAAGTTGAAAAATCAGCAGATGAAGTTATTTTTGATAAATTGCATATG ACTGCATTTAGAGATCATCCATTAGGATATACCATTTTAGGACCAGTAGAAAATATTAAA AATATGAAAAAAAATGATATATTAAATTATATTCAAAAAAATTATACATCAGATAGGATG GTTTTATGTGCTGTTGGAGATGTAGAACATGATAATATTGTCAAATTAGTAGAACAAAAT TTTTCGAATATTAAACCACAAGATGAAAAAGGACTTATTTTAAAACAAGAGTTTGATAAA ATAAAACCATTCTTTTGTGGATCAGAAATTATAATAAGAGATGATGATTCAGGACCTAAT GCTCATGTAGCTGTAGCTTTTGAAGGTGTCCCTTGGACTTCATCCGATTCAATCACATTT ATGTTAATGCAATGTATAATAGGAACATACAAAAAAAACGAAGAAGGTATTGTACCTGGA AAATTATCAGCAAATAGAACAATTAATAATATATCTAATAAAATGACAATAGGATGTGCT GACTATTTTACATCATTCAATACATGTTATAACAATACTGGCTTATTCGGTTTTTATGTA CAATGTGATGAACTAGCTGTTGAACATGCAGTTGGTGAGCTCATGTTTGGAATTACTTCT TTAAGTTATTCTATAACAGATGAAGAAGTCGAACTAGCCAAAATACATTTAAAAACGCAA CTTATTAGTATGTTTGAATCTTCATCTACTCTAGCAGAAGAAATATCCAGACAAATACTT GTATATGGTCGCCCAATTACCTTAGCAGAATTCATTACTAGATTAAATGAAATAGATGCT GAAGAAGTTAAAAGGGTTGCTTGGAAATATTTACATGATCGTGACATAGCAGTTGCTGCA ATGGGCGCTTTACATGGCATGCCTCAATATTTTGATCTCAGACAAAAAACATACTGGCTT CGATATTAG
  • Download Fasta

  • Fasta :-

    MLGKKIRNTLGNQLKGCMAYSRKYSTSNLMEEIKNQPLSKITELPNKMKVATIKNNCEVP TIGLWISSGSKYENKANNGVAHFLEHMIFKGTNKRNRVQLEKEIENMGAHLNAYTAREQT GYYFKCFKDDVKWCIELLSDILTNSVFDEKLIEMEKHVILREMEEVEKSADEVIFDKLHM TAFRDHPLGYTILGPVENIKNMKKNDILNYIQKNYTSDRMVLCAVGDVEHDNIVKLVEQN FSNIKPQDEKGLILKQEFDKIKPFFCGSEIIIRDDDSGPNAHVAVAFEGVPWTSSDSITF MLMQCIIGTYKKNEEGIVPGKLSANRTINNISNKMTIGCADYFTSFNTCYNNTGLFGFYV QCDELAVEHAVGELMFGITSLSYSITDEEVELAKIHLKTQLISMFESSSTLAEEISRQIL VYGRPITLAEFITRLNEIDAEEVKRVAWKYLHDRDIAVAAMGALHGMPQYFDLRQKTYWL RY

    No Results
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No Results
IDSitePeptideScoreMethod
PCHAS_0834700384 SSLSYSITDE0.997unsp

PCHAS_083470      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India