PCHAS_0912300 | rhoptry neck protein 4, putative

  • Computed_GO_Component_IDs:        

  • Computed_GO_Components:        

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:  GO:1990225      

  • Curated_GO_Components:  rhoptry neck      

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

No Results
No Results

  • Fasta :-

    >PCHAS_0912300 MSGIRLFYVCIFIVLSTFIHTAKSFQDNDDFWGFSFFDKNGDNNAENEKVEEGSHQNMQH TDDAANTGNEQQNVVNGSEHHANNTEELKNHEEHGEDQYEHTSQQINNEIEDSNNNNNNN NSDNTPEHNPSNQTNNSDIQESNHNDMSHQNATTENEHNTEHVPTEDTPADQAPTEQAPT EHVPTEDTPADQAPTEQAPTDQAPTDQAPTDQAPTDQAPADQAPAEQAPTEQAPAEQAPT EQAPTEQAPADQAPTEHGHNGEDEGEHSAEGDQINKNNNSKDHSDTTSSSSSSLDSAQFS DTTSSSSSSSGYSNLRKPVFGSPSNPLKGFSHNVTSQSSSSMPLFNYGQNIKKHATEMFT DITDKGLDSISDPHKYHLLKKKYIYLSVAERAILEIIDASKKGLDAIRGLKDHELFHKIY KDAVIRSNLNTHSIARGFDVITLEECDKILSEMFKILTQLSYDNYPKFYKSMNINKSALN ASFPEIKMKILKKIGVTYSKLPPIFKDTNGNKCPVSDFIISITPRELTQRLAIMFSNWLS ANEYGSIENFENNVELNVLCSGASILVQQWKYYQNILGFEDNNDHAFLGLIDELLTIDKK YSKNEEHTESLEKMKKSKVFNYCTKLMRTSGNISTIPFNHENNKTPSSSIIGSLGNLVKA HISGYYAATAQRINSYFNYSDKKNKKKTLPKVISICTLLNLTDILFNCTDPHSTHTPNWN LLKLNVLNTKGKDILNHLNNLNYLLNSENEAIKEVCNPKNDTVDKTLQNLLVLISSQSHD VLAQEVEKKGLGTGYIKDEIKNINEYYYNKIAEGEDDVEKAIFDDL
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0912300.fa Sequence name : PCHAS_0912300 Sequence length : 826 VALUES OF COMPUTED PARAMETERS Coef20 : 4.697 CoefTot : -0.058 ChDiff : -50 ZoneTo : 26 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.006 2.188 0.381 0.746 MesoH : -0.532 0.092 -0.444 0.195 MuHd_075 : 15.909 12.137 2.807 3.678 MuHd_095 : 24.543 19.742 7.802 6.634 MuHd_100 : 20.673 13.832 6.425 5.361 MuHd_105 : 20.889 15.702 5.972 5.792 Hmax_075 : 16.800 19.017 2.591 7.860 Hmax_095 : 20.600 24.400 5.436 8.120 Hmax_100 : 20.200 22.200 4.536 7.880 Hmax_105 : 21.700 23.000 4.113 6.210 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.7474 0.2526 DFMC : 0.8427 0.1573
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 826 PCHAS_0912300 MSGIRLFYVCIFIVLSTFIHTAKSFQDNDDFWGFSFFDKNGDNNAENEKVEEGSHQNMQHTDDAANTGNEQQNVVNGSEH 80 HANNTEELKNHEEHGEDQYEHTSQQINNEIEDSNNNNNNNNSDNTPEHNPSNQTNNSDIQESNHNDMSHQNATTENEHNT 160 EHVPTEDTPADQAPTEQAPTEHVPTEDTPADQAPTEQAPTDQAPTDQAPTDQAPTDQAPADQAPAEQAPTEQAPAEQAPT 240 EQAPTEQAPADQAPTEHGHNGEDEGEHSAEGDQINKNNNSKDHSDTTSSSSSSLDSAQFSDTTSSSSSSSGYSNLRKPVF 320 GSPSNPLKGFSHNVTSQSSSSMPLFNYGQNIKKHATEMFTDITDKGLDSISDPHKYHLLKKKYIYLSVAERAILEIIDAS 400 KKGLDAIRGLKDHELFHKIYKDAVIRSNLNTHSIARGFDVITLEECDKILSEMFKILTQLSYDNYPKFYKSMNINKSALN 480 ASFPEIKMKILKKIGVTYSKLPPIFKDTNGNKCPVSDFIISITPRELTQRLAIMFSNWLSANEYGSIENFENNVELNVLC 560 SGASILVQQWKYYQNILGFEDNNDHAFLGLIDELLTIDKKYSKNEEHTESLEKMKKSKVFNYCTKLMRTSGNISTIPFNH 640 ENNKTPSSSIIGSLGNLVKAHISGYYAATAQRINSYFNYSDKKNKKKTLPKVISICTLLNLTDILFNCTDPHSTHTPNWN 720 LLKLNVLNTKGKDILNHLNNLNYLLNSENEAIKEVCNPKNDTVDKTLQNLLVLISSQSHDVLAQEVEKKGLGTGYIKDEI 800 KNINEYYYNKIAEGEDDVEKAIFDDL 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 ................................................................................ 800 .......................... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0912300 5 --MSGIR|LF 0.074 . PCHAS_0912300 23 TFIHTAK|SF 0.092 . PCHAS_0912300 39 GFSFFDK|NG 0.071 . PCHAS_0912300 49 NNAENEK|VE 0.061 . PCHAS_0912300 89 NNTEELK|NH 0.061 . PCHAS_0912300 276 EGDQINK|NN 0.056 . PCHAS_0912300 281 NKNNNSK|DH 0.086 . PCHAS_0912300 316 SGYSNLR|KP 0.070 . PCHAS_0912300 317 GYSNLRK|PV 0.143 . PCHAS_0912300 328 SPSNPLK|GF 0.101 . PCHAS_0912300 352 NYGQNIK|KH 0.058 . PCHAS_0912300 353 YGQNIKK|HA 0.126 . PCHAS_0912300 365 FTDITDK|GL 0.065 . PCHAS_0912300 375 SISDPHK|YH 0.066 . PCHAS_0912300 380 HKYHLLK|KK 0.068 . PCHAS_0912300 381 KYHLLKK|KY 0.086 . PCHAS_0912300 382 YHLLKKK|YI 0.112 . PCHAS_0912300 391 YLSVAER|AI 0.120 . PCHAS_0912300 401 EIIDASK|KG 0.061 . PCHAS_0912300 402 IIDASKK|GL 0.125 . PCHAS_0912300 408 KGLDAIR|GL 0.098 . PCHAS_0912300 411 DAIRGLK|DH 0.095 . PCHAS_0912300 418 DHELFHK|IY 0.063 . PCHAS_0912300 421 LFHKIYK|DA 0.071 . PCHAS_0912300 426 YKDAVIR|SN 0.091 . PCHAS_0912300 436 NTHSIAR|GF 0.120 . PCHAS_0912300 448 TLEECDK|IL 0.073 . PCHAS_0912300 455 ILSEMFK|IL 0.073 . PCHAS_0912300 467 SYDNYPK|FY 0.061 . PCHAS_0912300 470 NYPKFYK|SM 0.075 . PCHAS_0912300 476 KSMNINK|SA 0.084 . PCHAS_0912300 487 ASFPEIK|MK 0.061 . PCHAS_0912300 489 FPEIKMK|IL 0.092 . PCHAS_0912300 492 IKMKILK|KI 0.071 . PCHAS_0912300 493 KMKILKK|IG 0.081 . PCHAS_0912300 500 IGVTYSK|LP 0.054 . PCHAS_0912300 506 KLPPIFK|DT 0.066 . PCHAS_0912300 512 KDTNGNK|CP 0.053 . PCHAS_0912300 525 IISITPR|EL 0.128 . PCHAS_0912300 530 PRELTQR|LA 0.091 . PCHAS_0912300 571 ILVQQWK|YY 0.082 . PCHAS_0912300 599 ELLTIDK|KY 0.064 . PCHAS_0912300 600 LLTIDKK|YS 0.113 . PCHAS_0912300 603 IDKKYSK|NE 0.063 . PCHAS_0912300 613 HTESLEK|MK 0.059 . PCHAS_0912300 615 ESLEKMK|KS 0.062 . PCHAS_0912300 616 SLEKMKK|SK 0.126 . PCHAS_0912300 618 EKMKKSK|VF 0.070 . PCHAS_0912300 625 VFNYCTK|LM 0.068 . PCHAS_0912300 628 YCTKLMR|TS 0.088 . PCHAS_0912300 644 FNHENNK|TP 0.067 . PCHAS_0912300 659 SLGNLVK|AH 0.065 . PCHAS_0912300 672 YAATAQR|IN 0.081 . PCHAS_0912300 682 YFNYSDK|KN 0.063 . PCHAS_0912300 683 FNYSDKK|NK 0.091 . PCHAS_0912300 685 YSDKKNK|KK 0.058 . PCHAS_0912300 686 SDKKNKK|KT 0.114 . PCHAS_0912300 687 DKKNKKK|TL 0.130 . PCHAS_0912300 691 KKKTLPK|VI 0.068 . PCHAS_0912300 723 PNWNLLK|LN 0.056 . PCHAS_0912300 730 LNVLNTK|GK 0.065 . PCHAS_0912300 732 VLNTKGK|DI 0.092 . PCHAS_0912300 753 SENEAIK|EV 0.072 . PCHAS_0912300 759 KEVCNPK|ND 0.059 . PCHAS_0912300 765 KNDTVDK|TL 0.066 . PCHAS_0912300 788 LAQEVEK|KG 0.056 . PCHAS_0912300 789 AQEVEKK|GL 0.146 . PCHAS_0912300 797 LGTGYIK|DE 0.062 . PCHAS_0912300 801 YIKDEIK|NI 0.061 . PCHAS_0912300 810 NEYYYNK|IA 0.072 . PCHAS_0912300 820 GEDDVEK|AI 0.070 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0912300 ATGTCTGGCATAAGGTTATTTTATGTATGCATTTTCATAGTGCTCTCTACATTTATTCAT ACCGCAAAATCATTTCAAGATAATGATGATTTTTGGGGATTTTCCTTTTTTGACAAAAAT GGCGATAATAACGCGGAAAATGAAAAAGTAGAAGAGGGCTCTCATCAAAATATGCAGCAC ACTGATGATGCTGCCAATACAGGAAATGAACAACAAAATGTAGTAAATGGTTCTGAGCAT CATGCAAATAATACTGAAGAATTAAAAAACCATGAAGAACATGGTGAAGATCAATATGAA CATACTTCTCAACAAATAAATAACGAAATCGAGGATAGCAATAATAACAATAACAATAAT AACAGTGACAATACTCCAGAGCATAATCCTTCGAACCAAACAAATAATTCAGATATTCAA GAATCAAATCATAATGACATGAGCCATCAAAATGCTACAACCGAGAATGAACACAACACT GAACATGTACCAACTGAAGATACACCAGCTGACCAAGCACCAACTGAGCAAGCACCAACT GAACATGTACCAACTGAAGATACACCAGCTGACCAAGCACCAACTGAACAAGCACCAACT GATCAAGCACCAACTGATCAAGCACCAACTGATCAAGCACCAACTGATCAAGCACCAGCT GATCAAGCACCAGCTGAACAAGCACCAACTGAACAAGCACCAGCTGAACAAGCACCAACT GAACAAGCACCAACTGAACAAGCACCAGCTGATCAAGCACCAACTGAACATGGACATAAT GGTGAAGATGAAGGTGAACACAGTGCGGAAGGAGACCAAATCAACAAAAACAATAATAGC AAGGATCACAGTGATACAACTTCAAGCAGCAGTTCTAGTTTAGATAGTGCTCAATTTAGC GATACCACAAGTTCAAGCTCATCTAGTTCAGGGTACTCGAATTTAAGAAAACCGGTTTTT GGAAGTCCTTCAAATCCTCTTAAAGGATTTTCACATAATGTTACGTCACAAAGCTCCTCA AGCATGCCATTATTTAATTATGGGCAAAATATTAAAAAACATGCTACTGAAATGTTTACT GATATTACGGATAAAGGATTGGACAGTATTTCCGATCCTCATAAATATCATTTATTAAAA AAAAAATATATATATTTATCAGTAGCAGAAAGAGCAATACTCGAAATTATAGATGCTTCT AAAAAAGGATTAGATGCAATTCGTGGTTTGAAAGATCATGAATTGTTTCATAAAATATAT AAGGACGCTGTAATAAGATCAAATTTGAATACCCATTCTATTGCCAGAGGATTCGACGTG ATCACACTTGAAGAATGTGATAAAATATTATCAGAAATGTTTAAAATATTAACTCAATTG TCCTATGATAATTATCCGAAATTTTATAAATCTATGAATATTAATAAATCAGCATTAAAC GCATCGTTTCCAGAAATAAAAATGAAAATATTAAAAAAAATTGGTGTTACATATTCAAAA TTACCACCAATTTTTAAAGATACAAATGGAAATAAATGCCCAGTTAGTGATTTTATTATA AGTATAACACCAAGAGAATTAACACAACGACTTGCTATTATGTTTAGTAATTGGCTATCT GCTAATGAATATGGTTCTATAGAAAATTTTGAAAATAATGTCGAACTAAATGTTTTATGT TCAGGTGCATCCATATTAGTGCAACAATGGAAATATTATCAAAATATTTTAGGGTTTGAA GATAATAATGATCATGCCTTTTTAGGTTTAATCGATGAATTGTTAACAATAGACAAAAAA TATAGTAAAAATGAAGAACATACTGAATCTTTAGAAAAAATGAAAAAATCAAAAGTATTT AATTATTGTACTAAACTTATGAGAACAAGTGGAAACATTTCGACAATACCATTTAATCAT GAAAACAATAAAACTCCAAGTTCATCTATTATTGGTTCATTAGGAAATTTAGTTAAGGCA CACATAAGTGGATATTATGCAGCAACTGCTCAAAGAATTAACTCTTATTTTAATTATTCG GACAAGAAAAATAAAAAGAAAACACTGCCTAAAGTCATTTCAATTTGTACTCTCTTAAAT TTAACAGATATATTATTTAATTGTACAGATCCACATTCAACTCATACCCCAAATTGGAAC CTCTTGAAGCTAAATGTATTAAATACTAAAGGAAAAGATATTCTAAATCATCTTAATAAC CTAAACTACCTATTAAATAGCGAAAACGAAGCAATTAAAGAAGTGTGTAATCCTAAAAAT GACACAGTTGATAAAACCTTGCAAAATTTGTTAGTTTTAATTTCATCACAATCACACGAT GTATTAGCACAAGAAGTAGAAAAGAAAGGTCTCGGTACTGGTTATATTAAGGATGAAATA AAAAATATAAATGAATATTACTACAATAAGATTGCCGAAGGAGAAGATGATGTTGAGAAA GCCATTTTTGATGATTTATGA
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  • Fasta :-

    No Results
    No Results
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No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_0912300307 STSSSSSSSG0.992unspPCHAS_0912300307 STSSSSSSSG0.992unspPCHAS_0912300307 STSSSSSSSG0.992unspPCHAS_0912300308 SSSSSSSSGY0.991unspPCHAS_0912300369 SKGLDSISDP0.994unspPCHAS_0912300528 TPRELTQRLA0.993unspPCHAS_091230024 SHTAKSFQDN0.995unspPCHAS_0912300292 SSSSSSSLDS0.997unsp

PCHAS_091230      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India