PCHAS_0928200 | 26S protease regulatory subunit 6A, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_0928200OTHER0.9999920.0000020.000006
No Results

  • Fasta :-

    >PCHAS_0928200 MNVENIFENEQVNVEEIEVLSNPEIRTRISLIDTEIKILKNEHTRLKNEYKNIQEKIKDN VEKIHLNKMLPYLVANVVESLDLQDDEDEQEPKDEYDLYDNPNSTNNTIYGNKSKSTPEE GFRDIDDEKRGKCMVIKTSTRQTIFLPVPGLIEASELKPGDLVGVNKDSYLIIDKLPPEY DNRVKAMEVIEKPTEDYSDIGGLDKQIEDLVEAIVLPMLHKEKFEKIGIKPPKGVLMHGP PGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEKAPAIIFIDEL DAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDETVKVIAATNRPDTLDPALLRSGRL DRKIELPHPNEESRARILQIHSRKMNVHKDVNFEELARSTDDFNGAQLKAVCVEAGMIAL RRGATEIDHEDFIEGITSVLSKKKSTLNYFT
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0928200.fa Sequence name : PCHAS_0928200 Sequence length : 451 VALUES OF COMPUTED PARAMETERS Coef20 : 3.138 CoefTot : -0.134 ChDiff : -20 ZoneTo : 3 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.829 1.012 -0.103 0.465 MesoH : -0.580 0.277 -0.410 0.197 MuHd_075 : 20.448 15.151 5.456 4.392 MuHd_095 : 13.820 12.112 4.438 3.340 MuHd_100 : 20.350 17.478 6.874 4.745 MuHd_105 : 23.188 18.964 7.812 5.159 Hmax_075 : -1.050 6.475 -2.641 2.949 Hmax_095 : -5.337 8.487 -2.678 3.447 Hmax_100 : 2.100 13.200 -0.619 4.720 Hmax_105 : 2.100 13.200 -0.619 4.680 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9728 0.0272 DFMC : 0.9643 0.0357
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 451 PCHAS_0928200 MNVENIFENEQVNVEEIEVLSNPEIRTRISLIDTEIKILKNEHTRLKNEYKNIQEKIKDNVEKIHLNKMLPYLVANVVES 80 LDLQDDEDEQEPKDEYDLYDNPNSTNNTIYGNKSKSTPEEGFRDIDDEKRGKCMVIKTSTRQTIFLPVPGLIEASELKPG 160 DLVGVNKDSYLIIDKLPPEYDNRVKAMEVIEKPTEDYSDIGGLDKQIEDLVEAIVLPMLHKEKFEKIGIKPPKGVLMHGP 240 PGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEKAPAIIFIDELDAIGTKRFDSELSGDREVQR 320 TMLELLNQLDGFSTDETVKVIAATNRPDTLDPALLRSGRLDRKIELPHPNEESRARILQIHSRKMNVHKDVNFEELARST 400 DDFNGAQLKAVCVEAGMIALRRGATEIDHEDFIEGITSVLSKKKSTLNYFT 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0928200 26 LSNPEIR|TR 0.102 . PCHAS_0928200 28 NPEIRTR|IS 0.076 . PCHAS_0928200 37 LIDTEIK|IL 0.057 . PCHAS_0928200 40 TEIKILK|NE 0.064 . PCHAS_0928200 45 LKNEHTR|LK 0.092 . PCHAS_0928200 47 NEHTRLK|NE 0.061 . PCHAS_0928200 51 RLKNEYK|NI 0.077 . PCHAS_0928200 56 YKNIQEK|IK 0.082 . PCHAS_0928200 58 NIQEKIK|DN 0.078 . PCHAS_0928200 63 IKDNVEK|IH 0.063 . PCHAS_0928200 68 EKIHLNK|ML 0.062 . PCHAS_0928200 93 EDEQEPK|DE 0.068 . PCHAS_0928200 113 NTIYGNK|SK 0.086 . PCHAS_0928200 115 IYGNKSK|ST 0.089 . PCHAS_0928200 123 TPEEGFR|DI 0.153 . PCHAS_0928200 129 RDIDDEK|RG 0.053 . PCHAS_0928200 130 DIDDEKR|GK 0.176 . PCHAS_0928200 132 DDEKRGK|CM 0.059 . PCHAS_0928200 137 GKCMVIK|TS 0.070 . PCHAS_0928200 141 VIKTSTR|QT 0.078 . PCHAS_0928200 158 IEASELK|PG 0.062 . PCHAS_0928200 167 DLVGVNK|DS 0.072 . PCHAS_0928200 175 SYLIIDK|LP 0.051 . PCHAS_0928200 183 PPEYDNR|VK 0.071 . PCHAS_0928200 185 EYDNRVK|AM 0.069 . PCHAS_0928200 192 AMEVIEK|PT 0.070 . PCHAS_0928200 205 DIGGLDK|QI 0.070 . PCHAS_0928200 221 VLPMLHK|EK 0.060 . PCHAS_0928200 223 PMLHKEK|FE 0.066 . PCHAS_0928200 226 HKEKFEK|IG 0.065 . PCHAS_0928200 230 FEKIGIK|PP 0.070 . PCHAS_0928200 233 IGIKPPK|GV 0.100 . PCHAS_0928200 245 GPPGTGK|TL 0.059 . PCHAS_0928200 250 GKTLLAR|AC 0.090 . PCHAS_0928200 262 TNATFLK|LA 0.118 . PCHAS_0928200 278 FIGDGAK|MV 0.085 . PCHAS_0928200 281 DGAKMVR|DA 0.122 . PCHAS_0928200 288 DAFNLAK|EK 0.067 . PCHAS_0928200 290 FNLAKEK|AP 0.061 . PCHAS_0928200 306 LDAIGTK|RF 0.062 . PCHAS_0928200 307 DAIGTKR|FD 0.174 . PCHAS_0928200 316 SELSGDR|EV 0.080 . PCHAS_0928200 320 GDREVQR|TM 0.096 . PCHAS_0928200 339 STDETVK|VI 0.057 . PCHAS_0928200 346 VIAATNR|PD 0.077 . PCHAS_0928200 356 LDPALLR|SG 0.086 . PCHAS_0928200 359 ALLRSGR|LD 0.220 . PCHAS_0928200 362 RSGRLDR|KI 0.247 . PCHAS_0928200 363 SGRLDRK|IE 0.071 . PCHAS_0928200 374 HPNEESR|AR 0.108 . PCHAS_0928200 376 NEESRAR|IL 0.090 . PCHAS_0928200 383 ILQIHSR|KM 0.090 . PCHAS_0928200 384 LQIHSRK|MN 0.092 . PCHAS_0928200 389 RKMNVHK|DV 0.132 . PCHAS_0928200 398 NFEELAR|ST 0.126 . PCHAS_0928200 409 FNGAQLK|AV 0.088 . PCHAS_0928200 421 AGMIALR|RG 0.095 . PCHAS_0928200 422 GMIALRR|GA 0.209 . PCHAS_0928200 442 ITSVLSK|KK 0.071 . PCHAS_0928200 443 TSVLSKK|KS 0.096 . PCHAS_0928200 444 SVLSKKK|ST 0.150 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0928200 ATGAACGTAGAAAATATTTTTGAAAATGAGCAGGTAAATGTAGAAGAAATAGAAGTATTA TCAAATCCCGAAATAAGAACCCGAATTAGTTTAATAGATACTGAAATAAAAATATTAAAA AATGAACATACAAGATTAAAAAATGAATATAAAAATATACAAGAAAAAATAAAAGATAAT GTTGAAAAAATACATTTAAATAAAATGCTTCCATATCTAGTTGCTAATGTGGTTGAATCT TTAGACTTACAAGATGATGAAGATGAACAAGAACCCAAAGATGAATATGATTTATATGAT AATCCTAATAGTACAAATAATACTATATATGGAAATAAATCAAAAAGTACACCTGAAGAG GGTTTTCGTGACATTGATGATGAGAAAAGAGGGAAGTGTATGGTAATTAAAACTTCAACA AGGCAAACTATATTTTTACCTGTACCTGGTCTTATTGAAGCATCTGAATTAAAGCCTGGA GATTTAGTTGGAGTAAATAAAGATAGTTATTTAATTATTGATAAATTACCTCCTGAGTAT GATAATAGAGTTAAAGCTATGGAAGTTATAGAAAAACCTACCGAAGATTATTCAGATATT GGTGGGTTAGATAAACAAATTGAAGACTTAGTAGAAGCCATTGTTTTACCTATGTTACAT AAAGAAAAATTTGAAAAAATCGGAATAAAACCTCCTAAGGGAGTATTAATGCATGGACCA CCAGGTACAGGAAAAACTTTATTAGCAAGAGCTTGTGCATCACAAACAAATGCAACTTTT TTAAAATTAGCTGGCCCACAATTAGTTCAAATGTTTATTGGTGATGGCGCAAAAATGGTA AGAGATGCTTTTAATCTAGCTAAAGAAAAAGCACCAGCTATTATTTTTATCGATGAATTA GATGCTATTGGAACAAAAAGATTTGATAGTGAATTATCAGGTGATAGAGAAGTACAAAGA ACTATGCTTGAACTTCTAAATCAATTAGATGGTTTTAGTACTGATGAAACAGTTAAAGTT ATTGCAGCTACTAATAGGCCAGATACATTAGATCCTGCTTTATTAAGATCAGGAAGATTA GATAGAAAAATAGAATTACCACACCCAAATGAAGAATCAAGAGCTAGAATTTTACAAATA CATTCAAGAAAAATGAATGTACATAAAGATGTTAATTTTGAAGAATTGGCTAGATCTACT GACGATTTTAATGGTGCACAATTAAAAGCCGTTTGTGTTGAAGCAGGAATGATAGCTTTA AGAAGAGGTGCAACTGAAATAGATCATGAAGACTTTATTGAAGGTATTACTTCAGTTTTA TCAAAAAAGAAAAGCACACTTAACTATTTTACCTAA
  • Download Fasta

  • Fasta :-

    MNVENIFENEQVNVEEIEVLSNPEIRTRISLIDTEIKILKNEHTRLKNEYKNIQEKIKDN VEKIHLNKMLPYLVANVVESLDLQDDEDEQEPKDEYDLYDNPNSTNNTIYGNKSKSTPEE GFRDIDDEKRGKCMVIKTSTRQTIFLPVPGLIEASELKPGDLVGVNKDSYLIIDKLPPEY DNRVKAMEVIEKPTEDYSDIGGLDKQIEDLVEAIVLPMLHKEKFEKIGIKPPKGVLMHGP PGTGKTLLARACASQTNATFLKLAGPQLVQMFIGDGAKMVRDAFNLAKEKAPAIIFIDEL DAIGTKRFDSELSGDREVQRTMLELLNQLDGFSTDETVKVIAATNRPDTLDPALLRSGRL DRKIELPHPNEESRARILQIHSRKMNVHKDVNFEELARSTDDFNGAQLKAVCVEAGMIAL RRGATEIDHEDFIEGITSVLSKKKSTLNYFT

  • title: ATP binding site
  • coordinates: P240,P241,G242,T243,G244,K245,T246,L247,D298,N345
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_0928200310 SKRFDSELSG0.994unspPCHAS_0928200310 SKRFDSELSG0.994unspPCHAS_0928200310 SKRFDSELSG0.994unspPCHAS_0928200441 STSVLSKKKS0.995unspPCHAS_092820030 SRTRISLIDT0.998unspPCHAS_0928200116 SNKSKSTPEE0.995unsp

PCHAS_092820      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India