PCHAS_0931000 | apical membrane antigen 1, putative

  • Computed_GO_Component_IDs:  GO:0016020      

  • Computed_GO_Components:  membrane      

  • Computed_GO_Function_IDs:        

  • Computed_GO_Functions:        

  • Computed_GO_Process_IDs:  GO:0009405      

  • Computed_GO_Processes:  pathogenesis      

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

No Results
No Results

  • Fasta :-

    >PCHAS_0931000 MKEIYYIVILCSLYLINLGNCSEGTDNIISENGDVKFDLIPKENTERSHKLINPWEKFME KYDIEKVHGSGIRVDLGEDARVENQDYRIPSGKCPVMGKGITIQNSKVSFLTRVATGNQK VREGGLAFPQTDVNISPITIANLKLMYKDHKEILALNDMSLCAKHASFYVPGTNVNTAYR HPAVYDKSNQTCYILYVAAQENMGPRYCSNEEDNENQPFCFTPEKKDEYKNLSYLTKNLR EDWETSCPNKSIQNAKFGVWVDGYCSEYQKKEVRDSNSLSDCSKIVFDESASDQPKQYEK HLEDTAKIRRGIVDRNGKLIGEALLPIGSYRADQVKSKGKGYNWANYDKKEKKCYIFNKK PTCLINDKNFVATTALSSLEEASQESFPCDIYKKKIAEEIKVMNVNRNNNGNGTIQFPRI FISDDKESLKCPCEPTQLTQSSCNFFVCNCVEKRQFISENNEVEIKEEFKSEYESPINQR MLIIIILIATGAILASLLIFYFFKSNKPGDDYDKMGQADTYGKAQSRKDEMLDPEVSFWG EDKRASHTTPVLMEKPYY
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  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_0931000.fa Sequence name : PCHAS_0931000 Sequence length : 558 VALUES OF COMPUTED PARAMETERS Coef20 : 3.892 CoefTot : -0.623 ChDiff : -5 ZoneTo : 22 KR : 1 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.418 2.953 0.591 0.959 MesoH : -0.832 0.315 -0.415 0.180 MuHd_075 : 18.307 10.039 5.582 4.649 MuHd_095 : 21.873 16.667 8.025 4.001 MuHd_100 : 24.014 17.441 8.197 4.041 MuHd_105 : 19.626 12.794 7.304 2.923 Hmax_075 : 14.700 19.100 3.793 6.840 Hmax_095 : 17.600 23.200 5.341 6.480 Hmax_100 : 19.800 25.200 5.875 7.030 Hmax_105 : 15.700 22.000 5.490 6.379 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9983 0.0017 DFMC : 0.9986 0.0014
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 558 PCHAS_0931000 MKEIYYIVILCSLYLINLGNCSEGTDNIISENGDVKFDLIPKENTERSHKLINPWEKFMEKYDIEKVHGSGIRVDLGEDA 80 RVENQDYRIPSGKCPVMGKGITIQNSKVSFLTRVATGNQKVREGGLAFPQTDVNISPITIANLKLMYKDHKEILALNDMS 160 LCAKHASFYVPGTNVNTAYRHPAVYDKSNQTCYILYVAAQENMGPRYCSNEEDNENQPFCFTPEKKDEYKNLSYLTKNLR 240 EDWETSCPNKSIQNAKFGVWVDGYCSEYQKKEVRDSNSLSDCSKIVFDESASDQPKQYEKHLEDTAKIRRGIVDRNGKLI 320 GEALLPIGSYRADQVKSKGKGYNWANYDKKEKKCYIFNKKPTCLINDKNFVATTALSSLEEASQESFPCDIYKKKIAEEI 400 KVMNVNRNNNGNGTIQFPRIFISDDKESLKCPCEPTQLTQSSCNFFVCNCVEKRQFISENNEVEIKEEFKSEYESPINQR 480 MLIIIILIATGAILASLLIFYFFKSNKPGDDYDKMGQADTYGKAQSRKDEMLDPEVSFWGEDKRASHTTPVLMEKPYY 560 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 .............................................................................. 560 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_0931000 2 -----MK|EI 0.067 . PCHAS_0931000 36 SENGDVK|FD 0.060 . PCHAS_0931000 42 KFDLIPK|EN 0.053 . PCHAS_0931000 47 PKENTER|SH 0.106 . PCHAS_0931000 50 NTERSHK|LI 0.150 . PCHAS_0931000 57 LINPWEK|FM 0.079 . PCHAS_0931000 61 WEKFMEK|YD 0.071 . PCHAS_0931000 66 EKYDIEK|VH 0.064 . PCHAS_0931000 73 VHGSGIR|VD 0.069 . PCHAS_0931000 81 DLGEDAR|VE 0.072 . PCHAS_0931000 88 VENQDYR|IP 0.099 . PCHAS_0931000 93 YRIPSGK|CP 0.069 . PCHAS_0931000 99 KCPVMGK|GI 0.073 . PCHAS_0931000 107 ITIQNSK|VS 0.054 . PCHAS_0931000 113 KVSFLTR|VA 0.126 . PCHAS_0931000 120 VATGNQK|VR 0.058 . PCHAS_0931000 122 TGNQKVR|EG 0.140 . PCHAS_0931000 144 ITIANLK|LM 0.055 . PCHAS_0931000 148 NLKLMYK|DH 0.066 . PCHAS_0931000 151 LMYKDHK|EI 0.068 . PCHAS_0931000 164 DMSLCAK|HA 0.089 . PCHAS_0931000 180 NVNTAYR|HP 0.080 . PCHAS_0931000 187 HPAVYDK|SN 0.091 . PCHAS_0931000 206 QENMGPR|YC 0.151 . PCHAS_0931000 225 FCFTPEK|KD 0.059 . PCHAS_0931000 226 CFTPEKK|DE 0.110 . PCHAS_0931000 230 EKKDEYK|NL 0.070 . PCHAS_0931000 237 NLSYLTK|NL 0.073 . PCHAS_0931000 240 YLTKNLR|ED 0.062 . PCHAS_0931000 250 ETSCPNK|SI 0.105 . PCHAS_0931000 256 KSIQNAK|FG 0.074 . PCHAS_0931000 270 YCSEYQK|KE 0.055 . PCHAS_0931000 271 CSEYQKK|EV 0.169 . PCHAS_0931000 274 YQKKEVR|DS 0.090 . PCHAS_0931000 284 SLSDCSK|IV 0.090 . PCHAS_0931000 296 SASDQPK|QY 0.100 . PCHAS_0931000 300 QPKQYEK|HL 0.071 . PCHAS_0931000 307 HLEDTAK|IR 0.073 . PCHAS_0931000 309 EDTAKIR|RG 0.080 . PCHAS_0931000 310 DTAKIRR|GI 0.138 . PCHAS_0931000 315 RRGIVDR|NG 0.097 . PCHAS_0931000 318 IVDRNGK|LI 0.137 . PCHAS_0931000 331 LPIGSYR|AD 0.097 . PCHAS_0931000 336 YRADQVK|SK 0.157 . PCHAS_0931000 338 ADQVKSK|GK 0.083 . PCHAS_0931000 340 QVKSKGK|GY 0.073 . PCHAS_0931000 349 NWANYDK|KE 0.056 . PCHAS_0931000 350 WANYDKK|EK 0.112 . PCHAS_0931000 352 NYDKKEK|KC 0.057 . PCHAS_0931000 353 YDKKEKK|CY 0.097 . PCHAS_0931000 359 KCYIFNK|KP 0.067 . PCHAS_0931000 360 CYIFNKK|PT 0.089 . PCHAS_0931000 368 TCLINDK|NF 0.054 . PCHAS_0931000 393 FPCDIYK|KK 0.073 . PCHAS_0931000 394 PCDIYKK|KI 0.103 . PCHAS_0931000 395 CDIYKKK|IA 0.164 . PCHAS_0931000 401 KIAEEIK|VM 0.061 . PCHAS_0931000 407 KVMNVNR|NN 0.107 . PCHAS_0931000 419 GTIQFPR|IF 0.085 . PCHAS_0931000 426 IFISDDK|ES 0.054 . PCHAS_0931000 430 DDKESLK|CP 0.056 . PCHAS_0931000 453 VCNCVEK|RQ 0.070 . PCHAS_0931000 454 CNCVEKR|QF 0.172 . PCHAS_0931000 466 NNEVEIK|EE 0.065 . PCHAS_0931000 470 EIKEEFK|SE 0.072 . PCHAS_0931000 480 ESPINQR|ML 0.097 . PCHAS_0931000 504 LIFYFFK|SN 0.087 . PCHAS_0931000 507 YFFKSNK|PG 0.068 . PCHAS_0931000 514 PGDDYDK|MG 0.057 . PCHAS_0931000 523 QADTYGK|AQ 0.070 . PCHAS_0931000 527 YGKAQSR|KD 0.083 . PCHAS_0931000 528 GKAQSRK|DE 0.098 . PCHAS_0931000 543 SFWGEDK|RA 0.071 . PCHAS_0931000 544 FWGEDKR|AS 0.191 . PCHAS_0931000 555 TPVLMEK|PY 0.069 . ____________________________^_________________

  • Fasta :-

    >PCHAS_0931000 ATGAAAGAAATATATTATATTGTAATTTTGTGCTCTCTTTATCTAATAAACTTGGGTAAT TGTTCCGAAGGTACAGATAATATTATTTCAGAAAATGGTGACGTTAAATTTGATTTAATT CCAAAGGAAAATACTGAAAGAAGTCATAAACTAATTAATCCATGGGAAAAGTTCATGGAA AAATATGATATAGAAAAGGTGCATGGTTCTGGTATAAGAGTCGACTTAGGTGAAGATGCA CGTGTGGAAAATCAAGATTATAGAATACCTTCAGGTAAATGTCCAGTTATGGGAAAAGGT ATAACTATTCAAAATTCTAAGGTTTCATTTTTAACACGAGTAGCTACTGGTAATCAGAAA GTAAGAGAAGGAGGATTAGCATTTCCTCAAACAGATGTAAACATTTCTCCTATAACAATT GCCAATCTCAAACTAATGTATAAAGACCATAAAGAAATATTAGCATTAAATGATATGTCA TTGTGTGCAAAACATGCCTCATTTTATGTTCCAGGTACAAATGTCAATACAGCATATAGG CATCCCGCTGTTTATGACAAAAGTAATCAAACTTGTTACATTTTGTATGTAGCAGCACAA GAAAATATGGGTCCAAGATATTGTAGCAATGAGGAAGACAATGAGAATCAACCATTTTGT TTTACACCAGAAAAAAAAGACGAATATAAAAATTTATCCTATTTAACTAAAAATTTGCGT GAAGATTGGGAAACCAGTTGCCCTAATAAAAGTATACAAAATGCTAAATTTGGAGTTTGG GTTGATGGTTATTGCTCAGAATATCAAAAGAAAGAAGTTCGTGACAGCAATTCCTTATCA GACTGTAGTAAAATTGTTTTTGACGAAAGTGCTTCTGATCAACCTAAACAATATGAAAAA CATCTAGAGGATACTGCCAAAATTCGACGAGGAATTGTAGATAGGAATGGTAAACTTATA GGTGAAGCTTTATTACCAATAGGGTCATATAGAGCAGATCAAGTTAAAAGTAAAGGAAAG GGATATAACTGGGCAAATTATGATAAAAAAGAAAAAAAATGTTACATTTTCAATAAAAAA CCAACATGTTTAATTAATGATAAGAATTTTGTCGCAACAACGGCTTTATCAAGTTTAGAA GAAGCTTCCCAAGAAAGTTTCCCTTGTGATATATATAAAAAGAAAATCGCCGAAGAAATT AAAGTCATGAACGTGAACCGAAACAATAATGGAAATGGTACCATTCAATTTCCTAGGATA TTTATTTCAGATGACAAAGAGAGTTTAAAGTGTCCATGTGAACCTACACAATTGACTCAA AGCAGTTGTAATTTTTTTGTATGTAATTGTGTAGAGAAAAGACAATTTATATCTGAGAAT AATGAGGTTGAAATAAAAGAAGAGTTTAAAAGTGAATATGAAAGTCCAATAAATCAGAGA ATGTTAATTATTATAATTTTGATTGCTACTGGAGCTATATTAGCCTCTCTATTAATATTT TATTTCTTTAAGAGTAACAAACCAGGTGACGATTATGATAAAATGGGACAAGCAGATACC TATGGTAAAGCCCAAAGCAGAAAAGATGAAATGCTAGACCCAGAAGTGTCATTTTGGGGT GAAGATAAAAGAGCATCACACACAACACCAGTTTTGATGGAAAAACCATACTATTAA
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  • Fasta :-

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_0931000290 SVFDESASDQ0.996unspPCHAS_0931000290 SVFDESASDQ0.996unspPCHAS_0931000290 SVFDESASDQ0.996unspPCHAS_0931000378 STALSSLEEA0.996unspPCHAS_0931000428 SDDKESLKCP0.993unspPCHAS_0931000471 SEEFKSEYES0.995unspPCHAS_0931000475 SSEYESPINQ0.997unspPCHAS_0931000526 SGKAQSRKDE0.997unspPCHAS_0931000546 SDKRASHTTP0.991unspPCHAS_093100091 SYRIPSGKCP0.995unspPCHAS_0931000276 SEVRDSNSLS0.993unsp

PCHAS_093100      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India