PCHAS_1032100 | rhomboid protease ROM8, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1032100OTHER0.9998120.0000070.000180
No Results

  • Fasta :-

    >PCHAS_1032100 MGIMEKGNSSSNAKTFLESEDKTKKIDGSKEYDDDDNNLKKASFSITSMNDNTNENKKDE NQNSGENEINNIKNYNTLPNSNGEIMPSNEENMLLSSNNTIILLKCVNNKSKVRNGSKNS SKSSYKKEKYKRSHTKKEKKFKVNSAGEDLLSDSRDYPSLKVNYKINKKTKKMAFPQMTM NDKNERISSSICTDNARFIKFLKEHGKNSHYKNRKRYNNIRIQQKKNVQKKDDNSKAINN YILDIHDRNMSSANIGSNNIHKSKTSLKYHTHDEQGDQAYLSELQIAENELTVKDKNRLK NYSNTIKEENKIIKQKAKIKAFLSRTRSFIFRKKTLRKRKEKIIIFLNHNDSPSENGKFN DHFYKTIHKDDLENLEEEKIYLDSNKGNTIKKIIYRIFPQFSIFSLILFVTFIQWVVFII LISVKSDFPLTPSNDSLKNFGSNFPYQIFKKAEVYRLFTALFLHSNFNHICANTYVQLTV GFLLEYLYGTYVVFLVYVFTGIYGIILSSPLTYCYSTTESSSSSSGIIGIFFSEIVMMTN FNVDTISISVHLFCFFLLLLFLKFSLNTISINIYSHFFGFIGGFLIGIILKRNQLKYFLK NNLLIQILSLIFLIVSLATAIYISTSVIQNCPYHI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1032100.fa Sequence name : PCHAS_1032100 Sequence length : 635 VALUES OF COMPUTED PARAMETERS Coef20 : 3.534 CoefTot : -0.250 ChDiff : 32 ZoneTo : 4 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.459 2.929 0.490 1.006 MesoH : 1.281 1.490 0.130 0.591 MuHd_075 : 14.858 9.653 4.151 4.324 MuHd_095 : 13.645 3.821 2.093 1.802 MuHd_100 : 3.695 7.802 2.287 1.579 MuHd_105 : 15.795 15.786 6.056 3.591 Hmax_075 : 7.400 6.000 0.234 3.700 Hmax_095 : 2.700 1.837 -2.569 2.048 Hmax_100 : 1.500 4.200 -1.213 1.740 Hmax_105 : 3.600 9.567 -0.946 3.080 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9371 0.0629 DFMC : 0.9610 0.0390
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 635 PCHAS_1032100 MGIMEKGNSSSNAKTFLESEDKTKKIDGSKEYDDDDNNLKKASFSITSMNDNTNENKKDENQNSGENEINNIKNYNTLPN 80 SNGEIMPSNEENMLLSSNNTIILLKCVNNKSKVRNGSKNSSKSSYKKEKYKRSHTKKEKKFKVNSAGEDLLSDSRDYPSL 160 KVNYKINKKTKKMAFPQMTMNDKNERISSSICTDNARFIKFLKEHGKNSHYKNRKRYNNIRIQQKKNVQKKDDNSKAINN 240 YILDIHDRNMSSANIGSNNIHKSKTSLKYHTHDEQGDQAYLSELQIAENELTVKDKNRLKNYSNTIKEENKIIKQKAKIK 320 AFLSRTRSFIFRKKTLRKRKEKIIIFLNHNDSPSENGKFNDHFYKTIHKDDLENLEEEKIYLDSNKGNTIKKIIYRIFPQ 400 FSIFSLILFVTFIQWVVFIILISVKSDFPLTPSNDSLKNFGSNFPYQIFKKAEVYRLFTALFLHSNFNHICANTYVQLTV 480 GFLLEYLYGTYVVFLVYVFTGIYGIILSSPLTYCYSTTESSSSSSGIIGIFFSEIVMMTNFNVDTISISVHLFCFFLLLL 560 FLKFSLNTISINIYSHFFGFIGGFLIGIILKRNQLKYFLKNNLLIQILSLIFLIVSLATAIYISTSVIQNCPYHI 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ........................................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1032100 6 -MGIMEK|GN 0.063 . PCHAS_1032100 14 NSSSNAK|TF 0.073 . PCHAS_1032100 22 FLESEDK|TK 0.054 . PCHAS_1032100 24 ESEDKTK|KI 0.073 . PCHAS_1032100 25 SEDKTKK|ID 0.109 . PCHAS_1032100 30 KKIDGSK|EY 0.063 . PCHAS_1032100 40 DDDNNLK|KA 0.067 . PCHAS_1032100 41 DDNNLKK|AS 0.114 . PCHAS_1032100 57 DNTNENK|KD 0.063 . PCHAS_1032100 58 NTNENKK|DE 0.108 . PCHAS_1032100 73 NEINNIK|NY 0.058 . PCHAS_1032100 105 NTIILLK|CV 0.065 . PCHAS_1032100 110 LKCVNNK|SK 0.077 . PCHAS_1032100 112 CVNNKSK|VR 0.067 . PCHAS_1032100 114 NNKSKVR|NG 0.083 . PCHAS_1032100 118 KVRNGSK|NS 0.061 . PCHAS_1032100 122 GSKNSSK|SS 0.124 . PCHAS_1032100 126 SSKSSYK|KE 0.063 . PCHAS_1032100 127 SKSSYKK|EK 0.130 . PCHAS_1032100 129 SSYKKEK|YK 0.080 . PCHAS_1032100 131 YKKEKYK|RS 0.072 . PCHAS_1032100 132 KKEKYKR|SH 0.470 . PCHAS_1032100 136 YKRSHTK|KE 0.070 . PCHAS_1032100 137 KRSHTKK|EK 0.183 . PCHAS_1032100 139 SHTKKEK|KF 0.062 . PCHAS_1032100 140 HTKKEKK|FK 0.106 . PCHAS_1032100 142 KKEKKFK|VN 0.108 . PCHAS_1032100 155 DLLSDSR|DY 0.067 . PCHAS_1032100 161 RDYPSLK|VN 0.064 . PCHAS_1032100 165 SLKVNYK|IN 0.067 . PCHAS_1032100 168 VNYKINK|KT 0.061 . PCHAS_1032100 169 NYKINKK|TK 0.088 . PCHAS_1032100 171 KINKKTK|KM 0.076 . PCHAS_1032100 172 INKKTKK|MA 0.224 . PCHAS_1032100 183 QMTMNDK|NE 0.056 . PCHAS_1032100 186 MNDKNER|IS 0.089 . PCHAS_1032100 197 ICTDNAR|FI 0.090 . PCHAS_1032100 200 DNARFIK|FL 0.193 . PCHAS_1032100 203 RFIKFLK|EH 0.065 . PCHAS_1032100 207 FLKEHGK|NS 0.066 . PCHAS_1032100 212 GKNSHYK|NR 0.076 . PCHAS_1032100 214 NSHYKNR|KR 0.107 . PCHAS_1032100 215 SHYKNRK|RY 0.088 . PCHAS_1032100 216 HYKNRKR|YN 0.206 . PCHAS_1032100 221 KRYNNIR|IQ 0.114 . PCHAS_1032100 225 NIRIQQK|KN 0.065 . PCHAS_1032100 226 IRIQQKK|NV 0.216 . PCHAS_1032100 230 QKKNVQK|KD 0.069 . PCHAS_1032100 231 KKNVQKK|DD 0.169 . PCHAS_1032100 236 KKDDNSK|AI 0.068 . PCHAS_1032100 248 ILDIHDR|NM 0.094 . PCHAS_1032100 262 GSNNIHK|SK 0.085 . PCHAS_1032100 264 NNIHKSK|TS 0.065 . PCHAS_1032100 268 KSKTSLK|YH 0.073 . PCHAS_1032100 294 ENELTVK|DK 0.063 . PCHAS_1032100 296 ELTVKDK|NR 0.061 . PCHAS_1032100 298 TVKDKNR|LK 0.100 . PCHAS_1032100 300 KDKNRLK|NY 0.066 . PCHAS_1032100 307 NYSNTIK|EE 0.075 . PCHAS_1032100 311 TIKEENK|II 0.070 . PCHAS_1032100 314 EENKIIK|QK 0.071 . PCHAS_1032100 316 NKIIKQK|AK 0.081 . PCHAS_1032100 318 IIKQKAK|IK 0.066 . PCHAS_1032100 320 KQKAKIK|AF 0.066 . PCHAS_1032100 325 IKAFLSR|TR 0.110 . PCHAS_1032100 327 AFLSRTR|SF 0.097 . PCHAS_1032100 332 TRSFIFR|KK 0.100 . PCHAS_1032100 333 RSFIFRK|KT 0.089 . PCHAS_1032100 334 SFIFRKK|TL 0.089 . PCHAS_1032100 337 FRKKTLR|KR 0.082 . PCHAS_1032100 338 RKKTLRK|RK 0.097 . PCHAS_1032100 339 KKTLRKR|KE 0.127 . PCHAS_1032100 340 KTLRKRK|EK 0.242 . PCHAS_1032100 342 LRKRKEK|II 0.168 . PCHAS_1032100 358 SPSENGK|FN 0.097 . PCHAS_1032100 365 FNDHFYK|TI 0.070 . PCHAS_1032100 369 FYKTIHK|DD 0.061 . PCHAS_1032100 379 ENLEEEK|IY 0.057 . PCHAS_1032100 386 IYLDSNK|GN 0.066 . PCHAS_1032100 391 NKGNTIK|KI 0.065 . PCHAS_1032100 392 KGNTIKK|II 0.162 . PCHAS_1032100 396 IKKIIYR|IF 0.081 . PCHAS_1032100 425 IILISVK|SD 0.077 . PCHAS_1032100 438 PSNDSLK|NF 0.076 . PCHAS_1032100 450 FPYQIFK|KA 0.074 . PCHAS_1032100 451 PYQIFKK|AE 0.096 . PCHAS_1032100 456 KKAEVYR|LF 0.120 . PCHAS_1032100 563 LLLLFLK|FS 0.056 . PCHAS_1032100 591 LIGIILK|RN 0.054 . PCHAS_1032100 592 IGIILKR|NQ 0.122 . PCHAS_1032100 596 LKRNQLK|YF 0.071 . PCHAS_1032100 600 QLKYFLK|NN 0.060 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1032100 ATGGGCATAATGGAAAAAGGAAACTCTAGTTCAAATGCTAAGACATTTTTAGAATCAGAA GATAAAACCAAAAAAATTGATGGCAGTAAAGAATATGACGATGATGATAATAATTTAAAA AAAGCGAGTTTTTCAATAACAAGCATGAATGATAATACGAATGAAAATAAAAAGGATGAA AATCAAAATAGTGGAGAAAATGAAATAAATAATATTAAAAACTATAATACATTGCCAAAT TCTAATGGTGAAATCATGCCATCAAATGAAGAAAATATGCTATTAAGTAGTAATAATACA ATAATTTTGTTAAAATGTGTAAATAATAAAAGTAAAGTTAGAAATGGTTCTAAAAATAGC TCCAAAAGTAGCTATAAGAAAGAGAAATATAAAAGAAGTCATACAAAAAAAGAAAAAAAG TTTAAAGTAAATAGTGCCGGTGAAGATTTATTATCTGATTCTCGGGATTATCCTTCTTTA AAAGTGAATTATAAAATTAATAAAAAAACAAAGAAAATGGCATTTCCACAAATGACAATG AATGATAAGAATGAACGAATTTCTAGTAGTATATGTACAGATAATGCAAGATTTATAAAA TTTTTAAAAGAGCATGGAAAAAATTCTCATTACAAAAATCGTAAAAGATATAATAACATA CGAATACAACAAAAAAAAAATGTTCAAAAAAAAGATGATAATTCAAAAGCAATAAATAAT TATATATTAGATATTCATGATAGAAATATGTCTAGTGCAAATATAGGATCAAATAATATA CATAAATCTAAAACATCGTTAAAATATCATACACATGATGAGCAAGGTGACCAAGCTTAT TTAAGTGAATTACAAATTGCAGAAAACGAACTAACAGTAAAAGATAAAAATCGTTTAAAA AATTATTCAAATACAATTAAAGAAGAAAATAAAATTATAAAACAAAAAGCTAAAATTAAA GCATTCTTGTCTCGAACTCGATCCTTTATATTTCGAAAAAAAACATTAAGAAAAAGAAAA GAAAAAATTATAATATTTTTAAATCATAATGATTCACCATCTGAAAATGGAAAATTTAAT GATCATTTTTATAAAACTATACATAAGGACGATTTAGAAAATTTAGAAGAAGAAAAAATA TATCTTGATAGTAATAAAGGAAATACTATCAAAAAAATTATATATAGAATATTTCCACAA TTTTCCATATTTAGTTTAATCTTATTTGTTACATTTATTCAATGGGTAGTATTTATTATA CTCATATCCGTAAAATCTGATTTTCCTTTAACACCATCAAATGATTCGTTAAAGAATTTT GGCAGTAATTTCCCTTATCAAATTTTTAAAAAGGCAGAAGTTTATCGCCTTTTTACAGCT TTGTTTTTGCATTCAAATTTCAACCACATTTGTGCCAACACATATGTCCAGTTAACTGTC GGATTCTTATTAGAATATTTGTATGGAACATATGTCGTTTTTTTAGTTTACGTATTCACA GGCATATATGGAATAATATTATCATCTCCTTTAACATATTGTTACTCAACTACAGAAAGC AGTAGTAGTTCATCGGGAATTATTGGAATATTTTTTTCAGAAATTGTAATGATGACTAAT TTTAATGTAGACACAATTAGTATTAGTGTTCATTTATTTTGTTTTTTCCTTCTTCTTTTA TTTCTTAAATTCTCATTGAACACTATCAGTATTAATATTTATAGCCATTTTTTTGGTTTC ATTGGAGGATTTCTGATAGGAATTATTTTAAAGCGTAATCAATTGAAATACTTTTTAAAG AATAATTTATTAATTCAAATATTATCCCTTATTTTTCTCATTGTAAGTTTAGCAACTGCT ATTTATATTTCAACATCTGTCATACAGAATTGCCCATATCACATTTAA
  • Download Fasta

  • Fasta :-

    MGIMEKGNSSSNAKTFLESEDKTKKIDGSKEYDDDDNNLKKASFSITSMNDNTNENKKDE NQNSGENEINNIKNYNTLPNSNGEIMPSNEENMLLSSNNTIILLKCVNNKSKVRNGSKNS SKSSYKKEKYKRSHTKKEKKFKVNSAGEDLLSDSRDYPSLKVNYKINKKTKKMAFPQMTM NDKNERISSSICTDNARFIKFLKEHGKNSHYKNRKRYNNIRIQQKKNVQKKDDNSKAINN YILDIHDRNMSSANIGSNNIHKSKTSLKYHTHDEQGDQAYLSELQIAENELTVKDKNRLK NYSNTIKEENKIIKQKAKIKAFLSRTRSFIFRKKTLRKRKEKIIIFLNHNDSPSENGKFN DHFYKTIHKDDLENLEEEKIYLDSNKGNTIKKIIYRIFPQFSIFSLILFVTFIQWVVFII LISVKSDFPLTPSNDSLKNFGSNFPYQIFKKAEVYRLFTALFLHSNFNHICANTYVQLTV GFLLEYLYGTYVVFLVYVFTGIYGIILSSPLTYCYSTTESSSSSSGIIGIFFSEIVMMTN FNVDTISISVHLFCFFLLLLFLKFSLNTISINIYSHFFGFIGGFLIGIILKRNQLKYFLK NNLLIQILSLIFLIVSLATAIYISTSVIQNCPYHI

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_1032100352 SNHNDSPSEN0.995unspPCHAS_1032100352 SNHNDSPSEN0.995unspPCHAS_1032100352 SNHNDSPSEN0.995unspPCHAS_1032100436 SPSNDSLKNF0.991unspPCHAS_1032100123 SNSSKSSYKK0.992unspPCHAS_1032100124 SSSKSSYKKE0.995unsp

PCHAS_103210      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India