PCHAS_1100400 | lysophospholipase, putative

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  • Computed_GO_Function_IDs:        

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  • Curated_GO_Component_IDs:        

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_IDPredictionOTHERSPmTPCS_Position
PCHAS_1100400OTHER0.9998290.0000710.000101
No Results

  • Fasta :-

    >PCHAS_1100400 MEEIELNSDELKSNTLSKLDGDPKTSWFCNKKGLLLKTYRWLAKNAFGAVLLLHGFQSHT RLTFMKINIKMPNKNHGLVVDTDNYYIYKDSWIEKFNQSGYSVYALDLQGHGESQAWKNI RGDFSCYDDLVDDVMQYMNHIQDEISNDNKTNYESHNIVTTKKKKLPIYIVGYSLGGNIA LRILQLLNKEKRDNINAGESNNYKKCSIMLGNSTNMDEIDNGMCAINNSNDYSSDNSYPS TSSTANTIASYKDEGCYNYLDKLNIKGCVSLSGLIRVKSILDPGNKSFKYFYLPITQFLR RILPCVRFSGKSLYKYSEYDAIACKYDKFKNRNVVNFKYMAELMKATTALDCNINYMPSN IPLLFVHSNDDTVCSYEWAVSFYNRANVTDKKFHAVENMNHDTTTKPGNEEIVKEIIDWI CNLRANNEDE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1100400.fa Sequence name : PCHAS_1100400 Sequence length : 430 VALUES OF COMPUTED PARAMETERS Coef20 : 3.325 CoefTot : 0.000 ChDiff : -1 ZoneTo : 1 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.606 1.341 0.094 0.536 MesoH : -1.026 0.036 -0.439 0.108 MuHd_075 : 20.077 15.251 5.127 4.893 MuHd_095 : 24.870 14.728 7.132 3.598 MuHd_100 : 16.294 9.499 3.818 2.021 MuHd_105 : 12.958 3.493 2.163 1.178 Hmax_075 : -7.233 2.100 -4.183 1.528 Hmax_095 : 5.100 8.600 -0.845 2.510 Hmax_100 : -2.500 1.300 -3.456 0.670 Hmax_105 : -6.388 -1.167 -4.522 0.420 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9654 0.0346 DFMC : 0.9821 0.0179
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 430 PCHAS_1100400 MEEIELNSDELKSNTLSKLDGDPKTSWFCNKKGLLLKTYRWLAKNAFGAVLLLHGFQSHTRLTFMKINIKMPNKNHGLVV 80 DTDNYYIYKDSWIEKFNQSGYSVYALDLQGHGESQAWKNIRGDFSCYDDLVDDVMQYMNHIQDEISNDNKTNYESHNIVT 160 TKKKKLPIYIVGYSLGGNIALRILQLLNKEKRDNINAGESNNYKKCSIMLGNSTNMDEIDNGMCAINNSNDYSSDNSYPS 240 TSSTANTIASYKDEGCYNYLDKLNIKGCVSLSGLIRVKSILDPGNKSFKYFYLPITQFLRRILPCVRFSGKSLYKYSEYD 320 AIACKYDKFKNRNVVNFKYMAELMKATTALDCNINYMPSNIPLLFVHSNDDTVCSYEWAVSFYNRANVTDKKFHAVENMN 400 HDTTTKPGNEEIVKEIIDWICNLRANNEDE 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 .............................. 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1100400 12 LNSDELK|SN 0.082 . PCHAS_1100400 18 KSNTLSK|LD 0.079 . PCHAS_1100400 24 KLDGDPK|TS 0.057 . PCHAS_1100400 31 TSWFCNK|KG 0.058 . PCHAS_1100400 32 SWFCNKK|GL 0.084 . PCHAS_1100400 37 KKGLLLK|TY 0.059 . PCHAS_1100400 40 LLLKTYR|WL 0.088 . PCHAS_1100400 44 TYRWLAK|NA 0.084 . PCHAS_1100400 61 GFQSHTR|LT 0.096 . PCHAS_1100400 66 TRLTFMK|IN 0.076 . PCHAS_1100400 70 FMKINIK|MP 0.056 . PCHAS_1100400 74 NIKMPNK|NH 0.068 . PCHAS_1100400 89 DNYYIYK|DS 0.073 . PCHAS_1100400 95 KDSWIEK|FN 0.079 . PCHAS_1100400 118 GESQAWK|NI 0.075 . PCHAS_1100400 121 QAWKNIR|GD 0.101 . PCHAS_1100400 150 EISNDNK|TN 0.065 . PCHAS_1100400 162 HNIVTTK|KK 0.061 . PCHAS_1100400 163 NIVTTKK|KK 0.083 . PCHAS_1100400 164 IVTTKKK|KL 0.102 . PCHAS_1100400 165 VTTKKKK|LP 0.085 . PCHAS_1100400 182 GGNIALR|IL 0.078 . PCHAS_1100400 189 ILQLLNK|EK 0.063 . PCHAS_1100400 191 QLLNKEK|RD 0.059 . PCHAS_1100400 192 LLNKEKR|DN 0.309 . PCHAS_1100400 204 GESNNYK|KC 0.080 . PCHAS_1100400 205 ESNNYKK|CS 0.123 . PCHAS_1100400 252 NTIASYK|DE 0.068 . PCHAS_1100400 262 CYNYLDK|LN 0.068 . PCHAS_1100400 266 LDKLNIK|GC 0.056 . PCHAS_1100400 276 SLSGLIR|VK 0.101 . PCHAS_1100400 278 SGLIRVK|SI 0.075 . PCHAS_1100400 286 ILDPGNK|SF 0.059 . PCHAS_1100400 289 PGNKSFK|YF 0.071 . PCHAS_1100400 300 PITQFLR|RI 0.072 . PCHAS_1100400 301 ITQFLRR|IL 0.142 . PCHAS_1100400 307 RILPCVR|FS 0.097 . PCHAS_1100400 311 CVRFSGK|SL 0.084 . PCHAS_1100400 315 SGKSLYK|YS 0.063 . PCHAS_1100400 325 YDAIACK|YD 0.062 . PCHAS_1100400 328 IACKYDK|FK 0.065 . PCHAS_1100400 330 CKYDKFK|NR 0.066 . PCHAS_1100400 332 YDKFKNR|NV 0.129 . PCHAS_1100400 338 RNVVNFK|YM 0.067 . PCHAS_1100400 345 YMAELMK|AT 0.068 . PCHAS_1100400 385 AVSFYNR|AN 0.095 . PCHAS_1100400 391 RANVTDK|KF 0.093 . PCHAS_1100400 392 ANVTDKK|FH 0.099 . PCHAS_1100400 406 NHDTTTK|PG 0.059 . PCHAS_1100400 414 GNEEIVK|EI 0.068 . PCHAS_1100400 424 DWICNLR|AN 0.080 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1100400 ATGGAAGAAATCGAATTGAATAGTGATGAATTAAAAAGTAATACACTAAGTAAATTAGAT GGCGATCCTAAGACGAGTTGGTTCTGTAATAAAAAGGGTTTACTCTTAAAAACATATAGA TGGCTAGCTAAGAATGCTTTCGGAGCTGTATTGTTATTACATGGGTTCCAATCTCATACT CGATTAACTTTTATGAAAATAAATATAAAAATGCCAAATAAAAATCACGGTTTAGTAGTA GACACTGATAATTACTATATTTATAAAGATAGTTGGATTGAAAAGTTTAATCAAAGTGGT TATTCAGTATATGCCCTGGATTTGCAAGGACATGGTGAATCACAAGCATGGAAAAATATA AGAGGCGATTTTAGTTGTTATGATGATCTAGTTGATGATGTAATGCAATATATGAATCAC ATTCAAGATGAAATCTCAAATGATAATAAAACGAATTATGAATCTCATAATATAGTAACA ACTAAAAAAAAAAAGCTTCCAATATATATTGTTGGATATTCACTGGGAGGAAATATTGCT TTAAGAATATTACAATTATTAAATAAAGAAAAACGAGATAACATCAATGCTGGAGAGTCA AATAACTATAAAAAATGTAGCATTATGTTAGGAAATTCTACTAATATGGATGAAATTGAC AATGGCATGTGTGCTATAAATAATTCTAATGATTACAGTTCCGATAATTCTTATCCTAGT ACCTCTTCTACGGCAAATACTATTGCTAGTTATAAAGATGAAGGATGTTATAATTATTTA GATAAATTAAATATTAAAGGTTGTGTATCTTTATCTGGTCTGATAAGAGTAAAATCAATA TTGGATCCTGGAAACAAATCATTTAAGTATTTTTATTTACCTATAACACAATTCCTACGT CGTATCTTACCTTGTGTACGATTTTCGGGAAAATCATTATATAAATATTCCGAATATGAT GCTATTGCATGTAAATATGATAAATTTAAAAATAGAAATGTAGTAAATTTTAAATATATG GCTGAACTTATGAAAGCAACAACCGCATTGGATTGTAATATTAATTATATGCCAAGCAAT ATTCCTTTATTATTTGTACACTCAAATGATGATACTGTTTGTTCTTATGAATGGGCAGTT TCGTTTTATAATAGAGCAAATGTTACTGATAAAAAATTTCATGCTGTTGAGAATATGAAT CATGATACAACAACAAAGCCAGGAAATGAAGAAATTGTAAAAGAAATTATTGATTGGATT TGTAACTTAAGAGCGAATAATGAAGACGAATAA
  • Download Fasta

  • Fasta :-

    MEEIELNSDELKSNTLSKLDGDPKTSWFCNKKGLLLKTYRWLAKNAFGAVLLLHGFQSHT RLTFMKINIKMPNKNHGLVVDTDNYYIYKDSWIEKFNQSGYSVYALDLQGHGESQAWKNI RGDFSCYDDLVDDVMQYMNHIQDEISNDNKTNYESHNIVTTKKKKLPIYIVGYSLGGNIA LRILQLLNKEKRDNINAGESNNYKKCSIMLGNSTNMDEIDNGMCAINNSNDYSSDNSYPS TSSTANTIASYKDEGCYNYLDKLNIKGCVSLSGLIRVKSILDPGNKSFKYFYLPITQFLR RILPCVRFSGKSLYKYSEYDAIACKYDKFKNRNVVNFKYMAELMKATTALDCNINYMPSN IPLLFVHSNDDTVCSYEWAVSFYNRANVTDKKFHAVENMNHDTTTKPGNEEIVKEIIDWI CNLRANNEDE

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_1100400240 SNSYPSTSST0.99unspPCHAS_1100400240 SNSYPSTSST0.99unspPCHAS_1100400240 SNSYPSTSST0.99unspPCHAS_1100400250 SNTIASYKDE0.996unspPCHAS_1100400309 SCVRFSGKSL0.994unspPCHAS_110040017 SSNTLSKLDG0.99unspPCHAS_1100400125 SRGDFSCYDD0.993unsp

PCHAS_110040      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India