PCHAS_1106200 | rhomboid protease ROM4, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1106200OTHER0.9999960.0000010.000003
No Results

  • Fasta :-

    >PCHAS_1106200 METNKPKKALNNSKKNESARESVDDATKRGAKSPPWINKANQIKKGNLGGDSKNNKDNLK KEIPENTTIPEKGVGTTPKNAPISTDNSRKNDIKNDGKSGAKNDGKSGAKNDSKNENANN SGDVKELKMDKDRLDEIRILVNNESELHTLPSGAVGRRAPLNPFSSPMLGKYRRKNANAK KKVKDPRLNNNPLVGRLVVCISTTAILFWVFFSELIYNYNTFNGRCISKVLYPIYTESVI SNREPFFVFLGYGACEYNLEESAFDRHFIGTQTSDNGWPKNKVEDNPDAHGYATWDSINN RVYNQLGGLNTNYIRNYGEIYRLFWSMYLHGGLMHIIFNVICQIQILWMIEPDWGFIRTL FLFFISGITGNLLSAVCDPCGVTIGSSGSLYGLIGALFAYYVEYWKTIPRPCCVIVFMML VVIFGIFIGMFGYTDNYAHIGGCLGGILYGFATITTVSSADKCTLGERMLTSPPFSWFLS NEAKQLIEEKAREKKIKGENYRKKQIANKVHKTDALHTIMSVMKNRINEEGRPSCKMKPR EWIVRITAASILIILWIVLFIYLLDESAYRSYTPMGQIKFSGVHSCFCCDVVKKIPLTQM EKLYWCFSSQDAFDYYCKE
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1106200.fa Sequence name : PCHAS_1106200 Sequence length : 619 VALUES OF COMPUTED PARAMETERS Coef20 : 3.523 CoefTot : -1.212 ChDiff : 20 ZoneTo : 16 KR : 5 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.941 3.259 0.748 1.040 MesoH : 1.186 1.383 0.194 0.577 MuHd_075 : 15.587 12.412 5.025 2.423 MuHd_095 : 12.437 9.636 4.936 3.901 MuHd_100 : 15.378 9.440 6.186 4.195 MuHd_105 : 22.270 11.015 8.082 4.717 Hmax_075 : -17.800 -4.900 -7.480 -2.240 Hmax_095 : -14.875 -5.075 -6.496 -0.595 Hmax_100 : -10.400 -4.500 -4.647 0.130 Hmax_105 : -7.000 -4.500 -4.193 0.090 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9942 0.0058 DFMC : 0.9931 0.0069
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 619 PCHAS_1106200 METNKPKKALNNSKKNESARESVDDATKRGAKSPPWINKANQIKKGNLGGDSKNNKDNLKKEIPENTTIPEKGVGTTPKN 80 APISTDNSRKNDIKNDGKSGAKNDGKSGAKNDSKNENANNSGDVKELKMDKDRLDEIRILVNNESELHTLPSGAVGRRAP 160 LNPFSSPMLGKYRRKNANAKKKVKDPRLNNNPLVGRLVVCISTTAILFWVFFSELIYNYNTFNGRCISKVLYPIYTESVI 240 SNREPFFVFLGYGACEYNLEESAFDRHFIGTQTSDNGWPKNKVEDNPDAHGYATWDSINNRVYNQLGGLNTNYIRNYGEI 320 YRLFWSMYLHGGLMHIIFNVICQIQILWMIEPDWGFIRTLFLFFISGITGNLLSAVCDPCGVTIGSSGSLYGLIGALFAY 400 YVEYWKTIPRPCCVIVFMMLVVIFGIFIGMFGYTDNYAHIGGCLGGILYGFATITTVSSADKCTLGERMLTSPPFSWFLS 480 NEAKQLIEEKAREKKIKGENYRKKQIANKVHKTDALHTIMSVMKNRINEEGRPSCKMKPREWIVRITAASILIILWIVLF 560 IYLLDESAYRSYTPMGQIKFSGVHSCFCCDVVKKIPLTQMEKLYWCFSSQDAFDYYCKE 640 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ........................................................... 640 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1106200 5 --METNK|PK 0.060 . PCHAS_1106200 7 METNKPK|KA 0.061 . PCHAS_1106200 8 ETNKPKK|AL 0.120 . PCHAS_1106200 14 KALNNSK|KN 0.072 . PCHAS_1106200 15 ALNNSKK|NE 0.140 . PCHAS_1106200 20 KKNESAR|ES 0.111 . PCHAS_1106200 28 SVDDATK|RG 0.057 . PCHAS_1106200 29 VDDATKR|GA 0.182 . PCHAS_1106200 32 ATKRGAK|SP 0.154 . PCHAS_1106200 39 SPPWINK|AN 0.073 . PCHAS_1106200 44 NKANQIK|KG 0.071 . PCHAS_1106200 45 KANQIKK|GN 0.112 . PCHAS_1106200 53 NLGGDSK|NN 0.061 . PCHAS_1106200 56 GDSKNNK|DN 0.088 . PCHAS_1106200 60 NNKDNLK|KE 0.064 . PCHAS_1106200 61 NKDNLKK|EI 0.094 . PCHAS_1106200 72 NTTIPEK|GV 0.082 . PCHAS_1106200 79 GVGTTPK|NA 0.078 . PCHAS_1106200 89 ISTDNSR|KN 0.095 . PCHAS_1106200 90 STDNSRK|ND 0.079 . PCHAS_1106200 94 SRKNDIK|ND 0.082 . PCHAS_1106200 98 DIKNDGK|SG 0.068 . PCHAS_1106200 102 DGKSGAK|ND 0.065 . PCHAS_1106200 106 GAKNDGK|SG 0.072 . PCHAS_1106200 110 DGKSGAK|ND 0.065 . PCHAS_1106200 114 GAKNDSK|NE 0.061 . PCHAS_1106200 125 NNSGDVK|EL 0.063 . PCHAS_1106200 128 GDVKELK|MD 0.069 . PCHAS_1106200 131 KELKMDK|DR 0.063 . PCHAS_1106200 133 LKMDKDR|LD 0.088 . PCHAS_1106200 138 DRLDEIR|IL 0.091 . PCHAS_1106200 157 PSGAVGR|RA 0.094 . PCHAS_1106200 158 SGAVGRR|AP 0.115 . PCHAS_1106200 171 SSPMLGK|YR 0.069 . PCHAS_1106200 173 PMLGKYR|RK 0.074 . PCHAS_1106200 174 MLGKYRR|KN 0.125 . PCHAS_1106200 175 LGKYRRK|NA 0.101 . PCHAS_1106200 180 RKNANAK|KK 0.067 . PCHAS_1106200 181 KNANAKK|KV 0.152 . PCHAS_1106200 182 NANAKKK|VK 0.142 . PCHAS_1106200 184 NAKKKVK|DP 0.068 . PCHAS_1106200 187 KKVKDPR|LN 0.098 . PCHAS_1106200 196 NNPLVGR|LV 0.092 . PCHAS_1106200 225 YNTFNGR|CI 0.110 . PCHAS_1106200 229 NGRCISK|VL 0.066 . PCHAS_1106200 243 ESVISNR|EP 0.082 . PCHAS_1106200 266 EESAFDR|HF 0.120 . PCHAS_1106200 280 SDNGWPK|NK 0.067 . PCHAS_1106200 282 NGWPKNK|VE 0.059 . PCHAS_1106200 301 WDSINNR|VY 0.102 . PCHAS_1106200 315 LNTNYIR|NY 0.094 . PCHAS_1106200 322 NYGEIYR|LF 0.072 . PCHAS_1106200 358 PDWGFIR|TL 0.081 . PCHAS_1106200 406 YYVEYWK|TI 0.054 . PCHAS_1106200 410 YWKTIPR|PC 0.099 . PCHAS_1106200 462 TVSSADK|CT 0.073 . PCHAS_1106200 468 KCTLGER|ML 0.070 . PCHAS_1106200 484 FLSNEAK|QL 0.080 . PCHAS_1106200 490 KQLIEEK|AR 0.069 . PCHAS_1106200 492 LIEEKAR|EK 0.096 . PCHAS_1106200 494 EEKAREK|KI 0.059 . PCHAS_1106200 495 EKAREKK|IK 0.411 . PCHAS_1106200 497 AREKKIK|GE 0.090 . PCHAS_1106200 502 IKGENYR|KK 0.095 . PCHAS_1106200 503 KGENYRK|KQ 0.071 . PCHAS_1106200 504 GENYRKK|QI 0.172 . PCHAS_1106200 509 KKQIANK|VH 0.058 . PCHAS_1106200 512 IANKVHK|TD 0.066 . PCHAS_1106200 524 TIMSVMK|NR 0.067 . PCHAS_1106200 526 MSVMKNR|IN 0.163 . PCHAS_1106200 532 RINEEGR|PS 0.113 . PCHAS_1106200 536 EGRPSCK|MK 0.060 . PCHAS_1106200 538 RPSCKMK|PR 0.126 . PCHAS_1106200 540 SCKMKPR|EW 0.123 . PCHAS_1106200 545 PREWIVR|IT 0.106 . PCHAS_1106200 570 LDESAYR|SY 0.118 . PCHAS_1106200 579 TPMGQIK|FS 0.084 . PCHAS_1106200 593 FCCDVVK|KI 0.059 . PCHAS_1106200 594 CCDVVKK|IP 0.084 . PCHAS_1106200 602 PLTQMEK|LY 0.052 . PCHAS_1106200 618 AFDYYCK|E- 0.058 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1106200 ATGGAAACAAATAAACCGAAAAAGGCTTTAAATAATAGTAAGAAGAATGAATCTGCGCGT GAATCAGTAGATGATGCCACTAAGAGGGGTGCCAAATCACCTCCATGGATAAACAAAGCA AACCAAATAAAAAAAGGTAATCTAGGTGGGGATTCAAAAAATAATAAAGATAATTTGAAA AAGGAAATTCCAGAGAATACGACAATCCCTGAAAAAGGAGTTGGCACGACTCCGAAAAAT GCTCCCATCAGTACTGATAATAGCCGTAAAAATGATATCAAAAATGATGGCAAAAGTGGT GCCAAAAATGATGGCAAAAGCGGTGCCAAAAATGATTCTAAAAATGAGAATGCTAATAAT TCTGGAGATGTAAAGGAATTGAAAATGGATAAAGATCGGTTGGACGAAATCAGAATATTA GTTAACAACGAAAGCGAATTACATACTTTGCCATCTGGGGCTGTTGGGAGGAGAGCCCCC TTAAATCCATTTTCTTCACCAATGCTTGGGAAATATAGAAGAAAAAATGCGAATGCAAAA AAAAAAGTTAAAGATCCAAGATTAAATAATAATCCATTAGTTGGAAGATTAGTAGTATGT ATATCAACTACAGCAATTTTATTTTGGGTGTTTTTTTCCGAATTGATATATAATTATAAC ACATTTAATGGTAGATGTATATCTAAAGTTTTATACCCGATATATACAGAAAGTGTAATA TCAAACAGAGAACCATTTTTTGTGTTTTTAGGATATGGTGCATGTGAATATAATTTAGAA GAATCCGCTTTCGATAGACATTTTATAGGAACACAAACATCTGATAATGGATGGCCAAAA AATAAAGTAGAAGATAATCCAGATGCTCATGGATATGCTACATGGGACTCAATAAATAAT CGTGTATATAATCAATTAGGAGGATTGAATACAAATTATATTAGAAATTATGGAGAGATA TATCGTTTATTTTGGTCTATGTATTTACATGGTGGTTTAATGCATATAATATTTAATGTT ATATGTCAAATTCAGATATTATGGATGATTGAACCAGATTGGGGTTTTATAAGAACATTA TTTTTATTTTTTATATCTGGTATAACAGGTAATTTGTTATCAGCTGTTTGTGATCCTTGT GGTGTTACAATTGGATCATCAGGTTCTTTATATGGATTAATAGGTGCACTATTTGCTTAT TATGTAGAATATTGGAAGACTATACCTCGACCTTGTTGTGTGATTGTATTTATGATGCTA GTTGTTATATTTGGTATATTTATTGGTATGTTTGGATATACAGATAATTATGCGCATATT GGTGGCTGTTTAGGAGGTATTCTTTATGGCTTTGCTACAATCACTACAGTATCATCAGCT GATAAATGTACATTAGGTGAACGTATGTTAACATCCCCACCTTTTTCATGGTTTTTATCA AATGAAGCAAAACAATTAATTGAAGAAAAGGCTCGAGAAAAAAAAATTAAGGGGGAAAAT TATCGTAAAAAACAAATAGCTAATAAAGTTCATAAAACAGATGCATTACATACTATTATG TCTGTTATGAAAAATAGAATAAATGAAGAAGGAAGACCATCATGTAAAATGAAACCAAGA GAATGGATTGTACGTATCACAGCTGCATCTATTTTAATTATATTATGGATTGTCTTATTT ATATATTTATTAGATGAAAGTGCTTATCGATCTTATACACCAATGGGACAAATTAAATTT AGTGGGGTTCATTCTTGTTTTTGTTGTGATGTAGTTAAAAAAATTCCTTTAACACAAATG GAAAAATTATATTGGTGCTTTAGCAGTCAGGATGCATTTGATTATTATTGCAAGGAATGA
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  • Fasta :-

    METNKPKKALNNSKKNESARESVDDATKRGAKSPPWINKANQIKKGNLGGDSKNNKDNLK KEIPENTTIPEKGVGTTPKNAPISTDNSRKNDIKNDGKSGAKNDGKSGAKNDSKNENANN SGDVKELKMDKDRLDEIRILVNNESELHTLPSGAVGRRAPLNPFSSPMLGKYRRKNANAK KKVKDPRLNNNPLVGRLVVCISTTAILFWVFFSELIYNYNTFNGRCISKVLYPIYTESVI SNREPFFVFLGYGACEYNLEESAFDRHFIGTQTSDNGWPKNKVEDNPDAHGYATWDSINN RVYNQLGGLNTNYIRNYGEIYRLFWSMYLHGGLMHIIFNVICQIQILWMIEPDWGFIRTL FLFFISGITGNLLSAVCDPCGVTIGSSGSLYGLIGALFAYYVEYWKTIPRPCCVIVFMML VVIFGIFIGMFGYTDNYAHIGGCLGGILYGFATITTVSSADKCTLGERMLTSPPFSWFLS NEAKQLIEEKAREKKIKGENYRKKQIANKVHKTDALHTIMSVMKNRINEEGRPSCKMKPR EWIVRITAASILIILWIVLFIYLLDESAYRSYTPMGQIKFSGVHSCFCCDVVKKIPLTQM EKLYWCFSSQDAFDYYCKE

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_110620088 SSTDNSRKND0.994unspPCHAS_110620088 SSTDNSRKND0.994unspPCHAS_110620088 SSTDNSRKND0.994unspPCHAS_1106200241 SESVISNREP0.996unspPCHAS_1106200534 SEGRPSCKMK0.995unspPCHAS_110620018 SKKNESARES0.997unspPCHAS_110620022 SSARESVDDA0.998unsp

PCHAS_110620      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India