PCHAS_1106600 | PIMMS2 protein, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1106600OTHER0.8791590.1157540.005087
No Results

  • Fasta :-

    >PCHAS_1106600 MVLLNGKRKYIAVVAIFYSFIILLVKEKFPYICTQKKSHTINNRILYEYLNNFVSKDIFR REDITLNNLNFVQTNLKYDKDVEIKENNDAQNADDNIFQRMYKFVLNFFYENKKDSTNKY MKYGKYEHFNKINDIFEFMRNNGLPINITSVCLIDTGLDIKDEIINHFLNNDISTYNSDT FHSVNINYKNADSFNFEINTENRDEDDYPEYESTFLENHNGDGSYEANSTSQGDPLKWGE KKYKKGMDLQRSGIHVETCKAFDNSKESKNGSNIIPIIKCLEYCKTKNVKIIHIDYNINE KNEELIEIIEDLKNSEIFLLLPSKGLLNEKSYEDNSVAYPSSFFENSENVFFIGSLNYLD VFSYDVNIASNSQAQKNEYLKYRKDNVFLFDSINGSLKKGNDHDISYYEVRYSSAFFINI LTTILNVYPNISINELRNMLSYSIIPEETDELKSQDIFEGNFEINKFIHGLLNGETNSSE YVRKSKDVPSKEFTNKEFVSEDQEDDIVEAEVEVEAEAEVEAEAEVEAEVEAEAEVEAEV EAEVEAEADSSADADYDKDGLDEDPINETDELDEPNEDSYEDNQSEKLLEDENYEFEEDP SKDLHSVKENDIYVLENENPFNSSFMQISYDDKVRPKYVDNLDEGNYRPQYEMNRYPIIS GDSLRGRQNMNNIQMVNDDIHYSENANNIEELYDNNFEGYRGNNLNQEYNKNYDNNKNVN SEFGGLNNWRRNNEGSYLNDSEEVHHPFEWMDMQAGDIYRDKKNRLKENNYDNNETEIRR RRKRGRGGENKRGRSMKNRNMRKTKKLGRDVKNRRYINRRTKRQIDKENKYNNSALKRQE MKSYNNSQKAPKIIPRRYSR
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1106600.fa Sequence name : PCHAS_1106600 Sequence length : 860 VALUES OF COMPUTED PARAMETERS Coef20 : 4.419 CoefTot : -1.452 ChDiff : -52 ZoneTo : 47 KR : 8 DE : 1 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 1.576 2.359 0.282 0.799 MesoH : -1.071 0.077 -0.542 0.165 MuHd_075 : 30.976 16.630 8.473 5.948 MuHd_095 : 24.604 20.294 9.181 5.228 MuHd_100 : 16.990 15.417 6.421 5.027 MuHd_105 : 20.849 14.748 6.805 5.838 Hmax_075 : 18.667 8.600 4.575 6.760 Hmax_095 : 4.113 21.437 0.460 7.219 Hmax_100 : 17.800 19.100 -1.085 7.360 Hmax_105 : 18.000 13.900 4.236 4.660 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.8663 0.1337 DFMC : 0.9241 0.0759
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 860 PCHAS_1106600 MVLLNGKRKYIAVVAIFYSFIILLVKEKFPYICTQKKSHTINNRILYEYLNNFVSKDIFRREDITLNNLNFVQTNLKYDK 80 DVEIKENNDAQNADDNIFQRMYKFVLNFFYENKKDSTNKYMKYGKYEHFNKINDIFEFMRNNGLPINITSVCLIDTGLDI 160 KDEIINHFLNNDISTYNSDTFHSVNINYKNADSFNFEINTENRDEDDYPEYESTFLENHNGDGSYEANSTSQGDPLKWGE 240 KKYKKGMDLQRSGIHVETCKAFDNSKESKNGSNIIPIIKCLEYCKTKNVKIIHIDYNINEKNEELIEIIEDLKNSEIFLL 320 LPSKGLLNEKSYEDNSVAYPSSFFENSENVFFIGSLNYLDVFSYDVNIASNSQAQKNEYLKYRKDNVFLFDSINGSLKKG 400 NDHDISYYEVRYSSAFFINILTTILNVYPNISINELRNMLSYSIIPEETDELKSQDIFEGNFEINKFIHGLLNGETNSSE 480 YVRKSKDVPSKEFTNKEFVSEDQEDDIVEAEVEVEAEAEVEAEAEVEAEVEAEAEVEAEVEAEVEAEADSSADADYDKDG 560 LDEDPINETDELDEPNEDSYEDNQSEKLLEDENYEFEEDPSKDLHSVKENDIYVLENENPFNSSFMQISYDDKVRPKYVD 640 NLDEGNYRPQYEMNRYPIISGDSLRGRQNMNNIQMVNDDIHYSENANNIEELYDNNFEGYRGNNLNQEYNKNYDNNKNVN 720 SEFGGLNNWRRNNEGSYLNDSEEVHHPFEWMDMQAGDIYRDKKNRLKENNYDNNETEIRRRRKRGRGGENKRGRSMKNRN 800 MRKTKKLGRDVKNRRYINRRTKRQIDKENKYNNSALKRQEMKSYNNSQKAPKIIPRRYSR 880 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................................ 480 ................................................................................ 560 ................................................................................ 640 ................................................................................ 720 .............................................................P.P................ 800 ......................P..................................... 880 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 3 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1106600 7 MVLLNGK|RK 0.055 . PCHAS_1106600 8 VLLNGKR|KY 0.132 . PCHAS_1106600 9 LLNGKRK|YI 0.111 . PCHAS_1106600 26 FIILLVK|EK 0.060 . PCHAS_1106600 28 ILLVKEK|FP 0.062 . PCHAS_1106600 36 PYICTQK|KS 0.062 . PCHAS_1106600 37 YICTQKK|SH 0.132 . PCHAS_1106600 44 SHTINNR|IL 0.100 . PCHAS_1106600 56 LNNFVSK|DI 0.120 . PCHAS_1106600 60 VSKDIFR|RE 0.084 . PCHAS_1106600 61 SKDIFRR|ED 0.126 . PCHAS_1106600 77 FVQTNLK|YD 0.061 . PCHAS_1106600 80 TNLKYDK|DV 0.130 . PCHAS_1106600 85 DKDVEIK|EN 0.069 . PCHAS_1106600 100 DDNIFQR|MY 0.114 . PCHAS_1106600 103 IFQRMYK|FV 0.164 . PCHAS_1106600 113 NFFYENK|KD 0.062 . PCHAS_1106600 114 FFYENKK|DS 0.097 . PCHAS_1106600 119 KKDSTNK|YM 0.066 . PCHAS_1106600 122 STNKYMK|YG 0.068 . PCHAS_1106600 125 KYMKYGK|YE 0.060 . PCHAS_1106600 131 KYEHFNK|IN 0.073 . PCHAS_1106600 140 DIFEFMR|NN 0.086 . PCHAS_1106600 161 DTGLDIK|DE 0.058 . PCHAS_1106600 189 SVNINYK|NA 0.073 . PCHAS_1106600 203 EINTENR|DE 0.121 . PCHAS_1106600 237 SQGDPLK|WG 0.068 . PCHAS_1106600 241 PLKWGEK|KY 0.061 . PCHAS_1106600 242 LKWGEKK|YK 0.112 . PCHAS_1106600 244 WGEKKYK|KG 0.073 . PCHAS_1106600 245 GEKKYKK|GM 0.127 . PCHAS_1106600 251 KGMDLQR|SG 0.159 . PCHAS_1106600 260 IHVETCK|AF 0.066 . PCHAS_1106600 266 KAFDNSK|ES 0.058 . PCHAS_1106600 269 DNSKESK|NG 0.085 . PCHAS_1106600 279 NIIPIIK|CL 0.060 . PCHAS_1106600 285 KCLEYCK|TK 0.059 . PCHAS_1106600 287 LEYCKTK|NV 0.076 . PCHAS_1106600 290 CKTKNVK|II 0.065 . PCHAS_1106600 301 DYNINEK|NE 0.062 . PCHAS_1106600 313 EIIEDLK|NS 0.056 . PCHAS_1106600 324 FLLLPSK|GL 0.059 . PCHAS_1106600 330 KGLLNEK|SY 0.075 . PCHAS_1106600 376 SNSQAQK|NE 0.062 . PCHAS_1106600 381 QKNEYLK|YR 0.069 . PCHAS_1106600 383 NEYLKYR|KD 0.100 . PCHAS_1106600 384 EYLKYRK|DN 0.073 . PCHAS_1106600 398 SINGSLK|KG 0.065 . PCHAS_1106600 399 INGSLKK|GN 0.111 . PCHAS_1106600 411 ISYYEVR|YS 0.129 . PCHAS_1106600 437 ISINELR|NM 0.071 . PCHAS_1106600 453 EETDELK|SQ 0.076 . PCHAS_1106600 466 GNFEINK|FI 0.075 . PCHAS_1106600 483 NSSEYVR|KS 0.114 . PCHAS_1106600 484 SSEYVRK|SK 0.132 . PCHAS_1106600 486 EYVRKSK|DV 0.283 . PCHAS_1106600 491 SKDVPSK|EF 0.076 . PCHAS_1106600 496 SKEFTNK|EF 0.062 . PCHAS_1106600 558 ADADYDK|DG 0.067 . PCHAS_1106600 587 EDNQSEK|LL 0.075 . PCHAS_1106600 602 FEEDPSK|DL 0.067 . PCHAS_1106600 608 KDLHSVK|EN 0.067 . PCHAS_1106600 633 QISYDDK|VR 0.061 . PCHAS_1106600 635 SYDDKVR|PK 0.080 . PCHAS_1106600 637 DDKVRPK|YV 0.091 . PCHAS_1106600 648 LDEGNYR|PQ 0.080 . PCHAS_1106600 655 PQYEMNR|YP 0.092 . PCHAS_1106600 665 ISGDSLR|GR 0.089 . PCHAS_1106600 667 GDSLRGR|QN 0.137 . PCHAS_1106600 701 NNFEGYR|GN 0.075 . PCHAS_1106600 711 LNQEYNK|NY 0.064 . PCHAS_1106600 717 KNYDNNK|NV 0.081 . PCHAS_1106600 730 GGLNNWR|RN 0.075 . PCHAS_1106600 731 GLNNWRR|NN 0.187 . PCHAS_1106600 760 QAGDIYR|DK 0.096 . PCHAS_1106600 762 GDIYRDK|KN 0.067 . PCHAS_1106600 763 DIYRDKK|NR 0.178 . PCHAS_1106600 765 YRDKKNR|LK 0.105 . PCHAS_1106600 767 DKKNRLK|EN 0.060 . PCHAS_1106600 779 NNETEIR|RR 0.076 . PCHAS_1106600 780 NETEIRR|RR 0.094 . PCHAS_1106600 781 ETEIRRR|RK 0.099 . PCHAS_1106600 782 TEIRRRR|KR 0.557 *ProP* PCHAS_1106600 783 EIRRRRK|RG 0.267 . PCHAS_1106600 784 IRRRRKR|GR 0.793 *ProP* PCHAS_1106600 786 RRRKRGR|GG 0.181 . PCHAS_1106600 791 GRGGENK|RG 0.061 . PCHAS_1106600 792 RGGENKR|GR 0.195 . PCHAS_1106600 794 GENKRGR|SM 0.147 . PCHAS_1106600 797 KRGRSMK|NR 0.151 . PCHAS_1106600 799 GRSMKNR|NM 0.154 . PCHAS_1106600 802 MKNRNMR|KT 0.439 . PCHAS_1106600 803 KNRNMRK|TK 0.089 . PCHAS_1106600 805 RNMRKTK|KL 0.215 . PCHAS_1106600 806 NMRKTKK|LG 0.099 . PCHAS_1106600 809 KTKKLGR|DV 0.137 . PCHAS_1106600 812 KLGRDVK|NR 0.105 . PCHAS_1106600 814 GRDVKNR|RY 0.097 . PCHAS_1106600 815 RDVKNRR|YI 0.139 . PCHAS_1106600 819 NRRYINR|RT 0.123 . PCHAS_1106600 820 RRYINRR|TK 0.169 . PCHAS_1106600 822 YINRRTK|RQ 0.143 . PCHAS_1106600 823 INRRTKR|QI 0.786 *ProP* PCHAS_1106600 827 TKRQIDK|EN 0.065 . PCHAS_1106600 830 QIDKENK|YN 0.066 . PCHAS_1106600 837 YNNSALK|RQ 0.060 . PCHAS_1106600 838 NNSALKR|QE 0.262 . PCHAS_1106600 842 LKRQEMK|SY 0.101 . PCHAS_1106600 849 SYNNSQK|AP 0.071 . PCHAS_1106600 852 NSQKAPK|II 0.064 . PCHAS_1106600 856 APKIIPR|RY 0.107 . PCHAS_1106600 857 PKIIPRR|YS 0.156 . PCHAS_1106600 860 IPRRYSR|-- 0.346 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1106600 ATGGTCCTTTTAAATGGAAAGCGAAAATATATCGCGGTTGTAGCGATATTTTACAGCTTT ATTATTTTATTAGTTAAGGAAAAGTTTCCTTATATATGTACCCAAAAAAAATCCCATACA ATTAATAATCGAATTCTTTATGAATATTTGAATAATTTTGTATCCAAAGACATTTTTAGA CGCGAAGATATAACTCTTAATAATCTCAATTTTGTTCAAACAAACTTGAAATATGATAAG GATGTTGAAATTAAAGAAAATAATGATGCACAAAATGCTGATGATAATATATTTCAAAGG ATGTATAAGTTTGTTTTAAACTTTTTTTATGAAAATAAAAAAGATAGTACAAACAAATAT ATGAAATATGGAAAATATGAACACTTTAATAAAATAAATGACATTTTTGAATTTATGAGA AACAATGGGTTACCAATTAATATAACCTCAGTATGTTTAATAGACACTGGATTGGATATT AAGGATGAGATAATTAACCATTTTTTAAATAATGATATTAGTACATATAATAGTGATACA TTTCATTCAGTTAATATAAATTATAAAAATGCTGATTCATTTAATTTTGAAATAAATACC GAAAATCGTGACGAAGATGATTATCCTGAATATGAGTCTACCTTTTTGGAAAATCATAAT GGAGATGGATCATATGAAGCTAATTCGACGAGCCAAGGTGATCCATTAAAATGGGGAGAA AAGAAATATAAGAAAGGTATGGATTTACAAAGAAGTGGTATACATGTAGAAACATGCAAA GCATTTGATAATAGTAAAGAATCAAAAAATGGCTCGAATATAATTCCTATAATTAAATGT CTAGAATATTGTAAAACCAAAAATGTAAAAATAATTCATATAGATTATAATATAAATGAA AAAAACGAAGAATTAATAGAGATTATAGAAGATTTAAAAAATTCAGAAATATTTCTACTT TTACCATCGAAAGGGTTACTTAATGAAAAATCTTATGAAGATAATTCTGTAGCATATCCA TCTTCATTTTTTGAAAATTCGGAAAATGTTTTTTTTATTGGATCACTGAATTATTTGGAT GTCTTTTCTTATGACGTTAATATTGCTTCTAATTCTCAAGCTCAAAAAAATGAATATTTA AAATATCGAAAAGATAATGTTTTCCTTTTCGATAGTATAAATGGAAGTTTAAAAAAAGGA AACGATCATGATATATCCTATTATGAAGTTAGATATAGTTCCGCATTTTTTATAAATATA CTAACGACAATCCTAAATGTATATCCAAATATATCTATTAATGAGTTACGAAATATGTTA AGCTATTCAATAATACCAGAAGAAACGGACGAATTAAAAAGCCAAGATATTTTTGAGGGC AATTTTGAGATAAATAAATTTATTCATGGCTTATTAAATGGGGAAACCAATTCATCTGAA TATGTTCGAAAATCTAAAGATGTGCCATCGAAAGAGTTCACGAACAAAGAGTTTGTTTCA GAGGATCAGGAAGATGATATCGTAGAAGCAGAAGTAGAAGTAGAAGCAGAAGCAGAAGTA GAAGCAGAAGCAGAAGTCGAAGCGGAAGTAGAAGCAGAAGCGGAAGTAGAAGCGGAAGTA GAAGCAGAAGTAGAAGCAGAAGCAGATTCGTCTGCCGATGCCGATTATGACAAAGATGGA CTCGATGAGGACCCAATAAATGAGACGGACGAATTAGATGAACCTAATGAGGATTCCTAC GAAGATAATCAGAGTGAGAAATTATTAGAGGACGAAAATTATGAGTTTGAAGAGGACCCA TCCAAAGATTTACATAGTGTTAAGGAAAATGATATTTATGTTTTAGAAAATGAAAACCCA TTTAATAGCAGTTTTATGCAAATAAGTTATGACGATAAAGTACGACCAAAATATGTAGAC AATTTAGATGAAGGGAATTATAGACCTCAATATGAGATGAATAGATACCCTATAATTTCA GGAGACAGTTTGAGAGGTAGACAAAATATGAATAATATTCAAATGGTCAATGATGATATA CATTATTCGGAAAATGCAAACAATATAGAAGAATTATATGATAACAATTTTGAAGGTTAT AGAGGAAACAATTTAAATCAAGAGTATAATAAAAATTATGACAATAATAAGAATGTTAAT AGCGAATTCGGGGGTTTAAATAATTGGAGAAGAAATAATGAGGGATCATATTTGAATGAT AGTGAAGAAGTACATCATCCATTTGAATGGATGGATATGCAAGCAGGTGATATTTATCGA GATAAAAAAAATCGATTAAAGGAAAATAATTATGATAATAATGAGACAGAAATAAGGAGA AGGAGAAAAAGAGGAAGAGGTGGAGAAAATAAAAGAGGCAGATCTATGAAGAATCGAAAT ATGCGAAAAACAAAAAAATTGGGTCGTGATGTAAAAAATAGAAGGTACATAAATAGACGG ACTAAAAGACAGATAGATAAGGAAAATAAATATAATAATAGTGCACTAAAAAGACAAGAA ATGAAATCATATAATAATTCACAAAAAGCTCCGAAAATAATTCCAAGAAGATATTCTAGA TAA
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  • Fasta :-

    MVLLNGKRKYIAVVAIFYSFIILLVKEKFPYICTQKKSHTINNRILYEYLNNFVSKDIFR REDITLNNLNFVQTNLKYDKDVEIKENNDAQNADDNIFQRMYKFVLNFFYENKKDSTNKY MKYGKYEHFNKINDIFEFMRNNGLPINITSVCLIDTGLDIKDEIINHFLNNDISTYNSDT FHSVNINYKNADSFNFEINTENRDEDDYPEYESTFLENHNGDGSYEANSTSQGDPLKWGE KKYKKGMDLQRSGIHVETCKAFDNSKESKNGSNIIPIIKCLEYCKTKNVKIIHIDYNINE KNEELIEIIEDLKNSEIFLLLPSKGLLNEKSYEDNSVAYPSSFFENSENVFFIGSLNYLD VFSYDVNIASNSQAQKNEYLKYRKDNVFLFDSINGSLKKGNDHDISYYEVRYSSAFFINI LTTILNVYPNISINELRNMLSYSIIPEETDELKSQDIFEGNFEINKFIHGLLNGETNSSE YVRKSKDVPSKEFTNKEFVSEDQEDDIVEAEVEVEAEAEVEAEAEVEAEVEAEAEVEAEV EAEVEAEADSSADADYDKDGLDEDPINETDELDEPNEDSYEDNQSEKLLEDENYEFEEDP SKDLHSVKENDIYVLENENPFNSSFMQISYDDKVRPKYVDNLDEGNYRPQYEMNRYPIIS GDSLRGRQNMNNIQMVNDDIHYSENANNIEELYDNNFEGYRGNNLNQEYNKNYDNNKNVN SEFGGLNNWRRNNEGSYLNDSEEVHHPFEWMDMQAGDIYRDKKNRLKENNYDNNETEIRR RRKRGRGGENKRGRSMKNRNMRKTKKLGRDVKNRRYINRRTKRQIDKENKYNNSALKRQE MKSYNNSQKAPKIIPRRYSR

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_1106600579 SPNEDSYEDN0.995unspPCHAS_1106600579 SPNEDSYEDN0.995unspPCHAS_1106600579 SPNEDSYEDN0.995unspPCHAS_1106600580 YNEDSYEDNQ0.993unspPCHAS_1106600606 SKDLHSVKEN0.998unspPCHAS_1106600331 SLNEKSYEDN0.994unspPCHAS_1106600550 SAEADSSADA0.994unsp

PCHAS_110660      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India