PCHAS_1114300 | rhomboid protease ROM9, putative

  • Computed_GO_Component_IDs:  GO:0016021      

  • Computed_GO_Components:  integral component of membrane      

  • Computed_GO_Function_IDs:  GO:0004252      

  • Computed_GO_Functions:  serine-type endopeptidase activity      

  • Computed_GO_Process_IDs:        

  • Computed_GO_Processes:        

  • Curated_GO_Component_IDs:        

  • Curated_GO_Components:        

  • Curated_GO_Function_IDs:        

  • Curated_GO_Functions:        

  • Curated_GO_Processes:        

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1114300OTHER0.7561650.0002880.243546
No Results

  • Fasta :-

    >PCHAS_1114300 MHMQRTTGMIFVGKRKIVTKNAHAYVHKSNIFSSKSKEKSYKYDKKELRDNALFLNNSIN TERNASTIYMPGNPSMNSLGRYAGNYSVRRFSKYSDKSILNEQKRKCESLLSNFQNFEIK NYLLKLNKGRLQNNNIQKKIKNIIIKFEENYKNMCKEKIDFYKYRISQINHSNYKNNLIF PTNFFNLFISNNNKVFKKLINATKIKGKLFLNNIPVYYKYGIKNIPYFKALLIHHYNKSP VTYSLIFLHFFVYFLWMNAKPRQMSYNYFSPTPIRSHSAPLLTSEFMYKHFCCSLKSLRE KQLYTLVTNIISHNTIQSFLLNTISLFYIGRSLEALINSKNFFLTYIVSGIISSYIQILY QKNSNYGYNNVYVLGASGSISSILATYTFIHPNHKIYLYGVLGLPLAVFSSFYFLNELYS IISNKNDDIGHASHLTGMVLGILYYYSYVNRKFRI
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1114300.fa Sequence name : PCHAS_1114300 Sequence length : 455 VALUES OF COMPUTED PARAMETERS Coef20 : 4.226 CoefTot : -1.475 ChDiff : 42 ZoneTo : 37 KR : 8 DE : 0 CleavSite : 25 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.012 1.718 0.287 0.767 MesoH : 0.479 0.635 -0.138 0.402 MuHd_075 : 41.717 21.564 10.942 9.264 MuHd_095 : 25.944 15.966 8.868 5.583 MuHd_100 : 25.155 14.217 8.792 5.816 MuHd_105 : 25.295 14.471 7.823 5.625 Hmax_075 : 14.350 18.800 3.500 4.725 Hmax_095 : 6.400 10.100 0.187 3.470 Hmax_100 : 11.000 10.100 1.512 4.190 Hmax_105 : 15.167 10.200 1.234 4.457 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.0741 0.9259 DFMC : 0.0654 0.9346 This protein is probably imported in mitochondria. f(Ser) = 0.1081 f(Arg) = 0.0541 CMi = 0.74212 CMi is the Chloroplast/Mitochondria Index It has been proposed by Von Heijne et al (Eur J Biochem,1989, 180: 535-545)
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 455 PCHAS_1114300 MHMQRTTGMIFVGKRKIVTKNAHAYVHKSNIFSSKSKEKSYKYDKKELRDNALFLNNSINTERNASTIYMPGNPSMNSLG 80 RYAGNYSVRRFSKYSDKSILNEQKRKCESLLSNFQNFEIKNYLLKLNKGRLQNNNIQKKIKNIIIKFEENYKNMCKEKID 160 FYKYRISQINHSNYKNNLIFPTNFFNLFISNNNKVFKKLINATKIKGKLFLNNIPVYYKYGIKNIPYFKALLIHHYNKSP 240 VTYSLIFLHFFVYFLWMNAKPRQMSYNYFSPTPIRSHSAPLLTSEFMYKHFCCSLKSLREKQLYTLVTNIISHNTIQSFL 320 LNTISLFYIGRSLEALINSKNFFLTYIVSGIISSYIQILYQKNSNYGYNNVYVLGASGSISSILATYTFIHPNHKIYLYG 400 VLGLPLAVFSSFYFLNELYSIISNKNDDIGHASHLTGMVLGILYYYSYVNRKFRI 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ....................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1114300 5 --MHMQR|TT 0.138 . PCHAS_1114300 14 GMIFVGK|RK 0.061 . PCHAS_1114300 15 MIFVGKR|KI 0.170 . PCHAS_1114300 16 IFVGKRK|IV 0.120 . PCHAS_1114300 20 KRKIVTK|NA 0.105 . PCHAS_1114300 28 AHAYVHK|SN 0.086 . PCHAS_1114300 35 SNIFSSK|SK 0.117 . PCHAS_1114300 37 IFSSKSK|EK 0.081 . PCHAS_1114300 39 SSKSKEK|SY 0.084 . PCHAS_1114300 42 SKEKSYK|YD 0.088 . PCHAS_1114300 45 KSYKYDK|KE 0.054 . PCHAS_1114300 46 SYKYDKK|EL 0.106 . PCHAS_1114300 49 YDKKELR|DN 0.096 . PCHAS_1114300 63 NSINTER|NA 0.114 . PCHAS_1114300 81 SMNSLGR|YA 0.138 . PCHAS_1114300 89 AGNYSVR|RF 0.101 . PCHAS_1114300 90 GNYSVRR|FS 0.174 . PCHAS_1114300 93 SVRRFSK|YS 0.286 . PCHAS_1114300 97 FSKYSDK|SI 0.086 . PCHAS_1114300 104 SILNEQK|RK 0.062 . PCHAS_1114300 105 ILNEQKR|KC 0.214 . PCHAS_1114300 106 LNEQKRK|CE 0.077 . PCHAS_1114300 120 FQNFEIK|NY 0.063 . PCHAS_1114300 125 IKNYLLK|LN 0.062 . PCHAS_1114300 128 YLLKLNK|GR 0.056 . PCHAS_1114300 130 LKLNKGR|LQ 0.083 . PCHAS_1114300 138 QNNNIQK|KI 0.073 . PCHAS_1114300 139 NNNIQKK|IK 0.126 . PCHAS_1114300 141 NIQKKIK|NI 0.079 . PCHAS_1114300 146 IKNIIIK|FE 0.085 . PCHAS_1114300 152 KFEENYK|NM 0.058 . PCHAS_1114300 156 NYKNMCK|EK 0.059 . PCHAS_1114300 158 KNMCKEK|ID 0.072 . PCHAS_1114300 163 EKIDFYK|YR 0.080 . PCHAS_1114300 165 IDFYKYR|IS 0.107 . PCHAS_1114300 175 INHSNYK|NN 0.061 . PCHAS_1114300 194 FISNNNK|VF 0.064 . PCHAS_1114300 197 NNNKVFK|KL 0.082 . PCHAS_1114300 198 NNKVFKK|LI 0.105 . PCHAS_1114300 204 KLINATK|IK 0.069 . PCHAS_1114300 206 INATKIK|GK 0.065 . PCHAS_1114300 208 ATKIKGK|LF 0.067 . PCHAS_1114300 219 NIPVYYK|YG 0.066 . PCHAS_1114300 223 YYKYGIK|NI 0.054 . PCHAS_1114300 229 KNIPYFK|AL 0.059 . PCHAS_1114300 238 LIHHYNK|SP 0.074 . PCHAS_1114300 260 FLWMNAK|PR 0.062 . PCHAS_1114300 262 WMNAKPR|QM 0.125 . PCHAS_1114300 275 FSPTPIR|SH 0.143 . PCHAS_1114300 289 TSEFMYK|HF 0.077 . PCHAS_1114300 296 HFCCSLK|SL 0.087 . PCHAS_1114300 299 CSLKSLR|EK 0.068 . PCHAS_1114300 301 LKSLREK|QL 0.083 . PCHAS_1114300 331 SLFYIGR|SL 0.162 . PCHAS_1114300 340 EALINSK|NF 0.052 . PCHAS_1114300 362 IQILYQK|NS 0.059 . PCHAS_1114300 395 FIHPNHK|IY 0.061 . PCHAS_1114300 425 YSIISNK|ND 0.074 . PCHAS_1114300 451 YYSYVNR|KF 0.103 . PCHAS_1114300 452 YSYVNRK|FR 0.086 . PCHAS_1114300 454 YVNRKFR|I- 0.358 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1114300 ATGCATATGCAAAGGACTACCGGGATGATATTCGTGGGGAAGAGAAAGATAGTAACAAAA AATGCGCATGCATATGTGCATAAAAGTAATATATTTTCTAGCAAGTCGAAAGAGAAATCA TATAAATATGATAAAAAAGAATTACGAGACAACGCTCTTTTTTTAAATAATAGCATTAAT ACGGAACGAAATGCTTCCACTATTTATATGCCAGGTAACCCATCAATGAATTCTTTGGGT AGATATGCTGGAAACTATTCGGTGCGTCGATTTTCGAAATATTCTGACAAAAGCATTTTG AACGAACAGAAACGAAAATGTGAGTCTTTATTATCTAATTTTCAAAATTTTGAAATAAAA AATTATTTATTAAAATTAAATAAAGGAAGATTACAGAATAATAATATTCAAAAGAAAATA AAAAATATAATTATAAAATTTGAAGAAAATTATAAAAATATGTGTAAAGAAAAAATCGAT TTTTATAAATATAGAATAAGTCAAATAAATCATAGCAATTATAAGAACAATTTAATTTTT CCTACCAATTTTTTTAATTTATTTATAAGTAATAATAATAAAGTTTTCAAGAAATTGATA AATGCTACAAAAATTAAAGGGAAATTATTTTTAAATAATATTCCAGTATATTATAAATAT GGAATAAAGAACATACCATATTTTAAAGCATTGTTAATACATCATTATAATAAATCACCA GTTACTTATAGTTTAATATTTTTACATTTTTTTGTTTATTTTTTATGGATGAATGCTAAG CCTAGACAAATGTCTTATAATTATTTTAGCCCAACCCCAATAAGATCTCATTCTGCTCCA TTATTAACATCAGAATTTATGTATAAACATTTTTGTTGTAGTTTAAAAAGCTTGAGAGAA AAACAATTATATACATTAGTAACAAACATAATAAGCCACAATACTATACAATCTTTTTTA TTAAATACAATATCTTTATTTTATATTGGACGTTCTTTAGAAGCTTTAATAAATTCAAAA AACTTTTTTTTAACATATATAGTCAGTGGGATTATTTCATCTTATATACAAATATTATAT CAAAAGAATTCAAACTATGGTTATAACAATGTTTATGTTTTGGGTGCTAGTGGAAGTATA AGTTCCATATTAGCTACATATACATTTATTCATCCCAACCATAAAATATATTTGTATGGG GTCCTAGGCTTACCATTAGCTGTTTTTTCGTCATTTTACTTTTTAAACGAGCTATACAGC ATTATATCAAACAAGAATGATGACATAGGACACGCATCGCATTTGACAGGAATGGTCCTT GGAATTCTTTACTATTACTCTTATGTTAATAGAAAGTTTCGAATATGA
  • Download Fasta

  • Fasta :-

    MHMQRTTGMIFVGKRKIVTKNAHAYVHKSNIFSSKSKEKSYKYDKKELRDNALFLNNSIN TERNASTIYMPGNPSMNSLGRYAGNYSVRRFSKYSDKSILNEQKRKCESLLSNFQNFEIK NYLLKLNKGRLQNNNIQKKIKNIIIKFEENYKNMCKEKIDFYKYRISQINHSNYKNNLIF PTNFFNLFISNNNKVFKKLINATKIKGKLFLNNIPVYYKYGIKNIPYFKALLIHHYNKSP VTYSLIFLHFFVYFLWMNAKPRQMSYNYFSPTPIRSHSAPLLTSEFMYKHFCCSLKSLRE KQLYTLVTNIISHNTIQSFLLNTISLFYIGRSLEALINSKNFFLTYIVSGIISSYIQILY QKNSNYGYNNVYVLGASGSISSILATYTFIHPNHKIYLYGVLGLPLAVFSSFYFLNELYS IISNKNDDIGHASHLTGMVLGILYYYSYVNRKFRI

    No Results
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_111430092 SVRRFSKYSD0.998unspPCHAS_111430092 SVRRFSKYSD0.998unspPCHAS_111430092 SVRRFSKYSD0.998unspPCHAS_1114300151 YFEENYKNMC0.99unspPCHAS_111430036 SFSSKSKEKS0.993unspPCHAS_111430040 SSKEKSYKYD0.996unsp

PCHAS_111430      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India