PCHAS_1125500 | E3 ubiquitin-protein ligase RNF5, putative

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_IDPredictionOTHERSPmTPCS_Position
PCHAS_1125500OTHER0.9999790.0000030.000017
No Results

  • Fasta :-

    >PCHAS_1125500 MNETSKEYDSLYDCIYDYEDNDELINIVNNDNLVNFNTQNKSVHPCINQNKDPSNDQTKI LTKNENHDEPNLFTDCISSNTLNDIDIYKDNQKVENIEKEKLGTRCKDEASTGKGSLLTS KTRINCNTHNSDTNKILENDNNNKSSELNKNITNSNEKNSTNNYVHINDDLNIIKNNHDE IENIYEKEINNDIKTIEETKDDNLNLLYQSSKELGSSPHELGFIILENTSEQIKKNERLL SKESKSGYDREKKNGNGYEQEQIDKNNINSNKQNEYNTTDNKNGSYQNNEKKETSSNNTP QQNDCNRSTFECNICFDDVRDPVVTRCGHLFCWFCLSAWIKKNNDCPVCKAEVTKENVIP LYGRGKNSSDHKYSTTEEPRPTPKRKENVRRNNDYSNNLGLRASFGVWANPFSFGMSYTN MSDQSHFYDNRNDNLRPQMDAFHVEAASSCFFFLGFFLSLYILFYSS
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1125500.fa Sequence name : PCHAS_1125500 Sequence length : 467 VALUES OF COMPUTED PARAMETERS Coef20 : 2.701 CoefTot : -0.134 ChDiff : -19 ZoneTo : 2 KR : 0 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 2.388 2.053 0.426 0.819 MesoH : -0.476 -0.021 -0.441 0.170 MuHd_075 : 34.596 19.932 9.940 3.526 MuHd_095 : 34.093 17.873 8.862 6.471 MuHd_100 : 44.104 22.410 11.427 7.684 MuHd_105 : 43.989 22.385 11.570 7.365 Hmax_075 : 1.983 5.483 0.434 1.493 Hmax_095 : 8.400 5.600 0.489 3.870 Hmax_100 : 9.700 6.100 0.756 3.870 Hmax_105 : 2.538 5.163 0.209 2.765 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9605 0.0395 DFMC : 0.9276 0.0724
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 467 PCHAS_1125500 MNETSKEYDSLYDCIYDYEDNDELINIVNNDNLVNFNTQNKSVHPCINQNKDPSNDQTKILTKNENHDEPNLFTDCISSN 80 TLNDIDIYKDNQKVENIEKEKLGTRCKDEASTGKGSLLTSKTRINCNTHNSDTNKILENDNNNKSSELNKNITNSNEKNS 160 TNNYVHINDDLNIIKNNHDEIENIYEKEINNDIKTIEETKDDNLNLLYQSSKELGSSPHELGFIILENTSEQIKKNERLL 240 SKESKSGYDREKKNGNGYEQEQIDKNNINSNKQNEYNTTDNKNGSYQNNEKKETSSNNTPQQNDCNRSTFECNICFDDVR 320 DPVVTRCGHLFCWFCLSAWIKKNNDCPVCKAEVTKENVIPLYGRGKNSSDHKYSTTEEPRPTPKRKENVRRNNDYSNNLG 400 LRASFGVWANPFSFGMSYTNMSDQSHFYDNRNDNLRPQMDAFHVEAASSCFFFLGFFLSLYILFYSS 480 ................................................................................ 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ................................................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 0 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1125500 6 -MNETSK|EY 0.065 . PCHAS_1125500 41 NFNTQNK|SV 0.142 . PCHAS_1125500 51 PCINQNK|DP 0.072 . PCHAS_1125500 59 PSNDQTK|IL 0.085 . PCHAS_1125500 63 QTKILTK|NE 0.063 . PCHAS_1125500 89 NDIDIYK|DN 0.083 . PCHAS_1125500 93 IYKDNQK|VE 0.055 . PCHAS_1125500 99 KVENIEK|EK 0.052 . PCHAS_1125500 101 ENIEKEK|LG 0.061 . PCHAS_1125500 105 KEKLGTR|CK 0.082 . PCHAS_1125500 107 KLGTRCK|DE 0.068 . PCHAS_1125500 114 DEASTGK|GS 0.058 . PCHAS_1125500 121 GSLLTSK|TR 0.057 . PCHAS_1125500 123 LLTSKTR|IN 0.081 . PCHAS_1125500 135 HNSDTNK|IL 0.080 . PCHAS_1125500 144 ENDNNNK|SS 0.073 . PCHAS_1125500 150 KSSELNK|NI 0.072 . PCHAS_1125500 158 ITNSNEK|NS 0.060 . PCHAS_1125500 175 DDLNIIK|NN 0.064 . PCHAS_1125500 187 IENIYEK|EI 0.066 . PCHAS_1125500 194 EINNDIK|TI 0.076 . PCHAS_1125500 200 KTIEETK|DD 0.062 . PCHAS_1125500 212 LLYQSSK|EL 0.076 . PCHAS_1125500 234 NTSEQIK|KN 0.068 . PCHAS_1125500 235 TSEQIKK|NE 0.079 . PCHAS_1125500 238 QIKKNER|LL 0.087 . PCHAS_1125500 242 NERLLSK|ES 0.064 . PCHAS_1125500 245 LLSKESK|SG 0.102 . PCHAS_1125500 250 SKSGYDR|EK 0.105 . PCHAS_1125500 252 SGYDREK|KN 0.082 . PCHAS_1125500 253 GYDREKK|NG 0.243 . PCHAS_1125500 265 EQEQIDK|NN 0.059 . PCHAS_1125500 272 NNINSNK|QN 0.071 . PCHAS_1125500 282 YNTTDNK|NG 0.057 . PCHAS_1125500 291 SYQNNEK|KE 0.062 . PCHAS_1125500 292 YQNNEKK|ET 0.119 . PCHAS_1125500 307 QQNDCNR|ST 0.155 . PCHAS_1125500 320 ICFDDVR|DP 0.081 . PCHAS_1125500 326 RDPVVTR|CG 0.073 . PCHAS_1125500 341 CLSAWIK|KN 0.073 . PCHAS_1125500 342 LSAWIKK|NN 0.092 . PCHAS_1125500 350 NDCPVCK|AE 0.069 . PCHAS_1125500 355 CKAEVTK|EN 0.067 . PCHAS_1125500 364 VIPLYGR|GK 0.078 . PCHAS_1125500 366 PLYGRGK|NS 0.068 . PCHAS_1125500 372 KNSSDHK|YS 0.098 . PCHAS_1125500 380 STTEEPR|PT 0.078 . PCHAS_1125500 384 EPRPTPK|RK 0.072 . PCHAS_1125500 385 PRPTPKR|KE 0.138 . PCHAS_1125500 386 RPTPKRK|EN 0.091 . PCHAS_1125500 390 KRKENVR|RN 0.091 . PCHAS_1125500 391 RKENVRR|NN 0.194 . PCHAS_1125500 402 SNNLGLR|AS 0.099 . PCHAS_1125500 431 SHFYDNR|ND 0.075 . PCHAS_1125500 436 NRNDNLR|PQ 0.130 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1125500 ATGAATGAAACTAGCAAAGAATATGATTCTCTCTATGATTGCATATATGATTACGAAGAT AATGATGAATTAATAAATATCGTTAACAATGATAACTTAGTAAATTTTAATACCCAAAAT AAATCAGTGCATCCATGCATAAATCAAAATAAAGACCCAAGCAATGACCAAACAAAAATA CTCACAAAAAATGAAAACCATGACGAACCGAATTTATTTACAGATTGTATATCATCAAAC ACTTTAAACGACATTGATATATATAAAGATAATCAAAAAGTTGAAAATATTGAAAAAGAA AAATTGGGGACTCGTTGCAAAGATGAAGCATCAACAGGCAAAGGCTCTTTACTAACCTCA AAAACTAGGATAAATTGTAATACTCATAATAGTGATACTAATAAAATTTTAGAAAACGAT AACAATAATAAATCGAGCGAATTAAATAAGAATATTACTAATTCAAATGAAAAAAATTCA ACGAATAATTATGTGCATATAAATGATGACTTAAATATTATAAAAAATAATCATGATGAA ATCGAAAATATATATGAAAAAGAAATTAATAACGATATAAAAACCATTGAAGAAACCAAA GATGATAACCTAAATCTTTTATATCAAAGCTCAAAGGAACTTGGATCGTCACCCCATGAA CTTGGTTTTATAATTTTAGAGAATACATCTGAACAAATAAAAAAAAACGAAAGATTATTA AGTAAAGAATCTAAAAGTGGGTACGATCGAGAGAAAAAAAATGGAAATGGATATGAGCAA GAGCAAATTGATAAAAATAACATAAATAGTAATAAACAAAATGAATATAATACAACCGAT AATAAAAATGGTTCATATCAAAATAATGAGAAAAAAGAAACTTCAAGTAATAATACCCCA CAACAAAATGATTGCAATAGAAGTACATTTGAATGCAATATATGCTTTGATGATGTAAGA GATCCTGTTGTTACTAGATGTGGTCATTTGTTTTGTTGGTTTTGTCTTTCTGCATGGATT AAAAAAAATAATGATTGCCCTGTATGCAAAGCAGAAGTAACCAAAGAAAATGTAATACCT TTGTATGGTAGAGGAAAAAATAGTAGTGATCATAAATATTCAACTACTGAAGAACCCAGA CCTACACCTAAAAGAAAAGAAAATGTTCGAAGAAATAACGACTATTCTAATAATTTAGGA TTAAGAGCTTCCTTTGGTGTATGGGCCAATCCGTTTTCTTTTGGCATGTCCTATACAAAC ATGTCTGACCAATCACATTTTTATGACAATAGAAATGATAATTTAAGGCCACAAATGGAT GCATTTCATGTTGAAGCTGCTTCTTCGTGTTTCTTTTTCTTAGGATTTTTTTTGTCTTTG TACATTTTGTTTTATTCGTCTTAG
  • Download Fasta

  • Fasta :-

    MNETSKEYDSLYDCIYDYEDNDELINIVNNDNLVNFNTQNKSVHPCINQNKDPSNDQTKI LTKNENHDEPNLFTDCISSNTLNDIDIYKDNQKVENIEKEKLGTRCKDEASTGKGSLLTS KTRINCNTHNSDTNKILENDNNNKSSELNKNITNSNEKNSTNNYVHINDDLNIIKNNHDE IENIYEKEINNDIKTIEETKDDNLNLLYQSSKELGSSPHELGFIILENTSEQIKKNERLL SKESKSGYDREKKNGNGYEQEQIDKNNINSNKQNEYNTTDNKNGSYQNNEKKETSSNNTP QQNDCNRSTFECNICFDDVRDPVVTRCGHLFCWFCLSAWIKKNNDCPVCKAEVTKENVIP LYGRGKNSSDHKYSTTEEPRPTPKRKENVRRNNDYSNNLGLRASFGVWANPFSFGMSYTN MSDQSHFYDNRNDNLRPQMDAFHVEAASSCFFFLGFFLSLYILFYSS

  • title: Zn binding site
  • coordinates: C312,C315,C327,H329,C332,C335,C346,C349
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_1125500246 SKESKSGYDR0.997unspPCHAS_1125500246 SKESKSGYDR0.997unspPCHAS_1125500246 SKESKSGYDR0.997unspPCHAS_1125500374 SDHKYSTTEE0.994unspPCHAS_1125500382 TEPRPTPKRK0.994unspPCHAS_112550010 SKEYDSLYDC0.993unspPCHAS_1125500217 SELGSSPHEL0.994unsp

PCHAS_112550      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India