PCHAS_1207300 | 26S protease regulatory subunit 4, putative

_IDPredictionOTHERSPmTPCS_Position
PCHAS_1207300OTHER0.9999870.0000020.000011
No Results

  • Fasta :-

    >PCHAS_1207300 MGNAQGGMNNNPYGFLGKKDDKDKGKDKEKKKLESSPPSHIGKRKKKKKGATGHSKLPTV TPNTKCRLKLLKLERIKDYLLLEEEFITNQEQIKTTDDKNYGKLKIDDLRGSPMSVGTLE ELIDENHGIIATSVGPEYYVNILSFVDKDLLEPGCSVLLNNKTNSVVGILLDEVDPLVSV MKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKT LLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDHAPSIVFIDEIDAVGTK RYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQL PNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDELSGADIKAICTEAGLLALRERRMK ITQLDLRKARDKALYQKKGNIPEGLYL
  • Download Fasta
  • MitoProt II - v1.101 File : /home/rajan/sadaf/4480_mitoprot/test/PCHAS_1207300.fa Sequence name : PCHAS_1207300 Sequence length : 447 VALUES OF COMPUTED PARAMETERS Coef20 : 2.412 CoefTot : -2.314 ChDiff : 1 ZoneTo : 19 KR : 2 DE : 0 CleavSite : 0 HYDROPHOBIC SCALE USED GES KD GVH1 ECS H17 : 0.671 1.453 -0.008 0.502 MesoH : -0.728 0.408 -0.388 0.253 MuHd_075 : 20.582 9.391 6.979 4.397 MuHd_095 : 19.925 15.806 4.800 3.445 MuHd_100 : 15.491 12.606 3.301 2.595 MuHd_105 : 5.714 5.943 2.568 0.922 Hmax_075 : 5.483 2.217 -0.534 3.453 Hmax_095 : 10.600 7.100 -0.676 3.540 Hmax_100 : 10.600 7.100 -0.676 3.470 Hmax_105 : 2.400 0.175 -3.722 1.140 CLASS NOT-MITO MITO(/CHLORO) DFM : 0.9895 0.0105 DFMC : 0.9862 0.0138
  • ##### ProP v.1.0b ProPeptide Cleavage Site Prediction ##### ##### Furin-type cleavage site prediction (Arginine/Lysine residues) ##### 447 PCHAS_1207300 MGNAQGGMNNNPYGFLGKKDDKDKGKDKEKKKLESSPPSHIGKRKKKKKGATGHSKLPTVTPNTKCRLKLLKLERIKDYL 80 LLEEEFITNQEQIKTTDDKNYGKLKIDDLRGSPMSVGTLEELIDENHGIIATSVGPEYYVNILSFVDKDLLEPGCSVLLN 160 NKTNSVVGILLDEVDPLVSVMKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKT 240 LLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDHAPSIVFIDEIDAVGTKRYEATSGGEREIQRTMLELL 320 NQLDGFDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQLPNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDELSGA 400 DIKAICTEAGLLALRERRMKITQLDLRKARDKALYQKKGNIPEGLYL 480 ..............................................P................................. 80 ................................................................................ 160 ................................................................................ 240 ................................................................................ 320 ................................................................................ 400 ............................................... 480 Propeptide cleavage sites predicted: Arg(R)/Lys(K): 1 Name Pos Context Score Pred ____________________________v_________________ PCHAS_1207300 18 PYGFLGK|KD 0.058 . PCHAS_1207300 19 YGFLGKK|DD 0.105 . PCHAS_1207300 22 LGKKDDK|DK 0.073 . PCHAS_1207300 24 KKDDKDK|GK 0.076 . PCHAS_1207300 26 DDKDKGK|DK 0.089 . PCHAS_1207300 28 KDKGKDK|EK 0.073 . PCHAS_1207300 30 KGKDKEK|KK 0.059 . PCHAS_1207300 31 GKDKEKK|KL 0.148 . PCHAS_1207300 32 KDKEKKK|LE 0.097 . PCHAS_1207300 43 PPSHIGK|RK 0.075 . PCHAS_1207300 44 PSHIGKR|KK 0.247 . PCHAS_1207300 45 SHIGKRK|KK 0.115 . PCHAS_1207300 46 HIGKRKK|KK 0.133 . PCHAS_1207300 47 IGKRKKK|KK 0.528 *ProP* PCHAS_1207300 48 GKRKKKK|KG 0.152 . PCHAS_1207300 49 KRKKKKK|GA 0.258 . PCHAS_1207300 56 GATGHSK|LP 0.064 . PCHAS_1207300 65 TVTPNTK|CR 0.056 . PCHAS_1207300 67 TPNTKCR|LK 0.110 . PCHAS_1207300 69 NTKCRLK|LL 0.054 . PCHAS_1207300 72 CRLKLLK|LE 0.058 . PCHAS_1207300 75 KLLKLER|IK 0.080 . PCHAS_1207300 77 LKLERIK|DY 0.063 . PCHAS_1207300 94 TNQEQIK|TT 0.080 . PCHAS_1207300 99 IKTTDDK|NY 0.065 . PCHAS_1207300 103 DDKNYGK|LK 0.065 . PCHAS_1207300 105 KNYGKLK|ID 0.064 . PCHAS_1207300 110 LKIDDLR|GS 0.092 . PCHAS_1207300 148 ILSFVDK|DL 0.094 . PCHAS_1207300 162 SVLLNNK|TN 0.058 . PCHAS_1207300 182 PLVSVMK|VE 0.060 . PCHAS_1207300 185 SVMKVEK|AP 0.060 . PCHAS_1207300 205 SQIQEIK|EA 0.063 . PCHAS_1207300 224 YEDIGIK|PP 0.057 . PCHAS_1207300 227 IGIKPPK|GV 0.097 . PCHAS_1207300 239 GPPGTGK|TL 0.061 . PCHAS_1207300 244 GKTLLAK|AV 0.077 . PCHAS_1207300 256 TSATFLR|VV 0.199 . PCHAS_1207300 265 GSELIQK|YL 0.086 . PCHAS_1207300 272 YLGDGPK|LV 0.074 . PCHAS_1207300 275 DGPKLVR|EM 0.078 . PCHAS_1207300 279 LVREMFK|VA 0.088 . PCHAS_1207300 300 IDAVGTK|RY 0.061 . PCHAS_1207300 301 DAVGTKR|YE 0.162 . PCHAS_1207300 310 ATSGGER|EI 0.079 . PCHAS_1207300 314 GEREIQR|TM 0.087 . PCHAS_1207300 329 LDGFDSR|GD 0.100 . PCHAS_1207300 333 DSRGDVK|VI 0.062 . PCHAS_1207300 340 VIMATNR|ID 0.079 . PCHAS_1207300 350 LDPALIR|PG 0.073 . PCHAS_1207300 353 ALIRPGR|ID 0.232 . PCHAS_1207300 356 RPGRIDR|KI 0.193 . PCHAS_1207300 357 PGRIDRK|IQ 0.077 . PCHAS_1207300 366 LPNPDTK|TK 0.073 . PCHAS_1207300 368 NPDTKTK|RR 0.069 . PCHAS_1207300 369 PDTKTKR|RI 0.226 . PCHAS_1207300 370 DTKTKRR|IF 0.136 . PCHAS_1207300 378 FQIHTSK|MT 0.061 . PCHAS_1207300 394 EEFVMSK|DE 0.060 . PCHAS_1207300 403 LSGADIK|AI 0.069 . PCHAS_1207300 415 AGLLALR|ER 0.068 . PCHAS_1207300 417 LLALRER|RM 0.078 . PCHAS_1207300 418 LALRERR|MK 0.466 . PCHAS_1207300 420 LRERRMK|IT 0.120 . PCHAS_1207300 427 ITQLDLR|KA 0.086 . PCHAS_1207300 428 TQLDLRK|AR 0.091 . PCHAS_1207300 430 LDLRKAR|DK 0.312 . PCHAS_1207300 432 LRKARDK|AL 0.081 . PCHAS_1207300 437 DKALYQK|KG 0.060 . PCHAS_1207300 438 KALYQKK|GN 0.119 . ____________________________^_________________

  • Fasta :-

    >PCHAS_1207300 ATGGGGAACGCACAAGGTGGTATGAATAATAATCCCTATGGATTTTTAGGGAAAAAAGAT GATAAAGACAAAGGAAAGGATAAGGAAAAAAAAAAGCTGGAAAGCTCCCCTCCATCACAT ATAGGGAAAAGAAAAAAAAAGAAAAAGGGAGCCACTGGACATTCCAAATTGCCTACTGTT ACTCCTAATACAAAATGTCGGTTAAAATTATTGAAATTAGAAAGGATAAAAGATTATTTG TTATTAGAAGAAGAATTTATAACAAACCAAGAACAGATAAAAACAACGGATGATAAAAAT TATGGAAAATTGAAAATTGACGATTTAAGAGGTTCACCTATGAGTGTTGGAACATTAGAA GAATTGATTGATGAAAATCATGGAATTATAGCTACCTCTGTAGGTCCAGAATATTATGTA AATATATTATCATTTGTCGATAAAGATTTATTAGAACCTGGATGTTCAGTTTTATTAAAT AATAAAACTAATAGTGTTGTAGGTATACTATTAGATGAGGTTGACCCATTAGTATCTGTT ATGAAAGTTGAAAAGGCCCCACTAGAATCATATGCTGATATTGGTGGATTAGAATCACAA ATACAAGAAATAAAAGAAGCAGTTGAATTACCCTTAACTCATCCTGAATTATATGAAGAC ATTGGTATTAAACCCCCCAAAGGTGTGATTTTATATGGTCCACCTGGTACTGGAAAAACA TTATTAGCAAAAGCTGTAGCAAATGAAACATCTGCTACATTTTTAAGAGTTGTAGGTTCT GAGTTAATACAAAAATATTTAGGAGATGGTCCCAAATTAGTTAGAGAAATGTTTAAGGTT GCTGAAGATCATGCACCTTCTATTGTTTTTATTGATGAAATTGATGCAGTTGGTACAAAA AGATATGAAGCAACAAGTGGTGGAGAAAGAGAAATTCAAAGAACTATGTTAGAATTATTA AATCAATTAGATGGATTTGATTCACGAGGTGATGTTAAAGTTATTATGGCTACTAATAGA ATTGATTCTTTAGATCCAGCTTTAATCAGACCAGGTAGAATAGATAGAAAAATTCAACTA CCAAATCCAGATACCAAAACTAAGAGAAGAATTTTCCAAATACATACTAGTAAAATGACA ATGTCTCCTGATGTAGATCTAGAAGAATTTGTAATGTCAAAAGATGAATTATCCGGTGCT GATATCAAAGCTATATGTACGGAAGCAGGTTTATTAGCTCTTCGAGAAAGAAGAATGAAA ATTACCCAACTCGATTTGCGTAAGGCAAGAGATAAAGCTTTGTATCAGAAAAAGGGAAAC ATACCAGAGGGCTTATATTTGTAA
  • Download Fasta

  • Fasta :-

    MGNAQGGMNNNPYGFLGKKDDKDKGKDKEKKKLESSPPSHIGKRKKKKKGATGHSKLPTV TPNTKCRLKLLKLERIKDYLLLEEEFITNQEQIKTTDDKNYGKLKIDDLRGSPMSVGTLE ELIDENHGIIATSVGPEYYVNILSFVDKDLLEPGCSVLLNNKTNSVVGILLDEVDPLVSV MKVEKAPLESYADIGGLESQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGPPGTGKT LLAKAVANETSATFLRVVGSELIQKYLGDGPKLVREMFKVAEDHAPSIVFIDEIDAVGTK RYEATSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIDSLDPALIRPGRIDRKIQL PNPDTKTKRRIFQIHTSKMTMSPDVDLEEFVMSKDELSGADIKAICTEAGLLALRERRMK ITQLDLRKARDKALYQKKGNIPEGLYL

  • title: ATP binding site
  • coordinates: P234,P235,G236,T237,G238,K239,T240,L241,D292,N339
No Results
No Results
IDSitePeptideScoreMethodIDSitePeptideScoreMethod
PCHAS_1207300306 SYEATSGGER0.996unspPCHAS_1207300398 SKDELSGADI0.993unsp

PCHAS_120730      



Dinesh Gupta lab Translational bioinformatics group, ICGEB, New Delhi, India